Wall clock time and date at job start Tue Mar 31 2020 10:48:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08999 * 109.47009 * 2 1
4 4 C 1.52995 * 109.47168 * 240.00283 * 2 1 3
5 5 C 1.52995 * 109.47176 * 174.99881 * 4 2 1
6 6 H 1.08995 * 109.47450 * 305.00083 * 5 4 2
7 7 O 1.42900 * 109.47215 * 64.99943 * 5 4 2
8 8 C 1.50707 * 109.47291 * 184.99823 * 5 4 2
9 9 C 1.33388 * 125.19940 * 100.00009 * 8 5 4
10 10 C 1.38433 * 114.91766 * 179.97438 * 9 8 5
11 11 C 1.33389 * 114.92022 * 0.02562 * 10 9 8
12 12 S 1.75879 * 125.20222 * 279.97535 * 8 5 4
13 13 N 1.46501 * 109.46955 * 120.00165 * 2 1 3
14 14 C 1.34776 * 120.00152 * 274.99560 * 13 2 1
15 15 O 1.21287 * 119.99765 * 0.02562 * 14 13 2
16 16 C 1.50697 * 120.00265 * 179.97438 * 14 13 2
17 17 S 1.80998 * 109.47211 * 180.02562 * 16 14 13
18 18 C 1.76198 * 100.00201 * 180.02562 * 17 16 14
19 19 H 1.08001 * 119.99551 * 359.97438 * 18 17 16
20 20 C 1.38796 * 120.00370 * 179.97438 * 18 17 16
21 21 N 1.31633 * 119.99758 * 0.02562 * 20 18 17
22 22 Si 1.86803 * 120.00206 * 180.02562 * 20 18 17
23 23 H 1.48497 * 109.47200 * 59.99822 * 22 20 18
24 24 H 1.48496 * 109.47110 * 180.02562 * 22 20 18
25 25 H 1.48500 * 109.46786 * 300.00075 * 22 20 18
26 26 H 1.08997 * 109.47461 * 299.99789 * 1 2 3
27 27 H 1.08996 * 109.47419 * 60.00110 * 1 2 3
28 28 H 1.08999 * 109.47009 * 180.02562 * 1 2 3
29 29 H 1.09000 * 109.47529 * 54.99410 * 4 2 1
30 30 H 1.09009 * 109.47150 * 294.99842 * 4 2 1
31 31 H 0.96700 * 114.00108 * 60.00439 * 7 5 4
32 32 H 1.08000 * 122.54563 * 359.95533 * 9 8 5
33 33 H 1.07998 * 122.53579 * 180.02562 * 10 9 8
34 34 H 1.07995 * 125.20209 * 180.26467 * 11 10 9
35 35 H 0.96998 * 119.99943 * 95.00661 * 13 2 1
36 36 H 1.08994 * 109.47382 * 300.01087 * 16 14 13
37 37 H 1.09011 * 109.46526 * 60.00792 * 16 14 13
38 38 H 0.96998 * 119.99596 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7212 -1.2492
5 6 3.5648 -0.6132 -1.3137
6 1 3.8570 0.4359 -1.2677
7 8 4.1392 -1.3164 -0.2102
8 6 4.0570 -1.2157 -2.6044
9 6 4.3983 -0.5260 -3.6939
10 6 4.8233 -1.2966 -4.7626
11 6 4.8265 -2.6119 -4.5410
12 16 4.2698 -2.9356 -2.9042
13 7 2.0183 -0.6907 1.1962
14 6 2.1471 -0.0183 2.3571
15 8 1.8583 1.1584 2.4117
16 6 2.6488 -0.7289 3.5877
17 16 2.7092 0.4340 4.9734
18 6 3.3125 -0.6312 6.2407
19 1 3.5217 -1.6676 6.0207
20 6 3.5187 -0.1383 7.5218
21 7 3.2632 1.1248 7.7900
22 14 4.1590 -1.2675 8.8651
23 1 5.4856 -1.8049 8.4696
24 1 4.2912 -0.5041 10.1320
25 1 3.2083 -2.3913 9.0618
26 1 -0.3634 0.5138 0.8900
27 1 -0.3634 0.5138 -0.8899
28 1 -0.3633 -1.0277 0.0005
29 1 1.6053 -0.2617 -2.1370
30 1 1.7516 -1.7715 -1.2056
31 1 3.9206 -2.2581 -0.1872
32 1 4.3468 0.5518 -3.7391
33 1 5.1290 -0.8654 -5.7044
34 1 5.1295 -3.3629 -5.2554
35 1 2.2491 -1.6318 1.1526
36 1 1.9760 -1.5507 3.8325
37 1 3.6481 -1.1214 3.3985
38 1 3.4070 1.4691 8.6853
RHF calculation, no. of doubly occupied orbitals= 53
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000269826775.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:48:41
Heat of formation + Delta-G solvation = -86.176474 kcal
Electronic energy + Delta-G solvation = -21087.470191 eV
Core-core repulsion = 17760.655691 eV
Total energy + Delta-G solvation = -3326.814501 eV
No. of doubly occupied orbitals = 53
Molecular weight
(most abundant/longest-lived isotopes) = 315.075 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-40.85475 -39.45797 -37.98603 -36.26122 -34.57024 -33.25798 -31.69247 -29.94955
-28.76411 -27.63997 -25.50299 -23.48209 -22.48278 -21.55924 -20.32910 -19.80721
-18.82342 -17.84420 -17.39412 -16.90790 -16.86366 -16.55271 -16.24909 -16.01273
-15.48237 -15.01508 -14.75469 -14.54305 -14.30584 -13.94285 -13.77543 -13.58086
-13.25363 -13.15314 -13.04741 -12.86112 -12.81759 -12.74525 -12.58404 -12.47599
-11.92502 -11.71729 -11.63932 -11.25101 -11.11533 -10.82568 -10.25171 -9.97487
-9.59668 -9.37832 -8.64144 -8.32975 -6.10647 0.03778 0.66992 1.05512
1.29246 1.44550 1.48410 1.59062 1.73758 1.81503 2.28595 2.39820
3.00718 3.31848 3.37619 3.48794 3.86656 3.99812 4.07373 4.22147
4.25064 4.34484 4.45103 4.50678 4.55452 4.62145 4.67963 4.81894
4.84641 4.90094 5.11626 5.21126 5.31907 5.36252 5.42677 5.54925
5.64688 6.21088 6.61965 6.66172 7.07920 7.37796 8.76102
Molecular weight = 315.07amu
Principal moments of inertia in cm(-1)
A = 0.021445 B = 0.002690 C = 0.002497
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1305.343764 B =10405.481577 C =11211.154282
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.146 3.854
3 H 0.063 0.937
4 C -0.138 4.138
5 C 0.180 3.820
6 H 0.103 0.897
7 O -0.558 6.558
8 C -0.220 4.220
9 C -0.140 4.140
10 C -0.144 4.144
11 C -0.216 4.216
12 S 0.105 5.895
13 N -0.695 5.695
14 C 0.537 3.463
15 O -0.571 6.571
16 C -0.127 4.127
17 S -0.153 6.153
18 C -0.546 4.546
19 H 0.082 0.918
20 C 0.012 3.988
21 N -0.912 5.912
22 Si 0.999 3.001
23 H -0.262 1.262
24 H -0.279 1.279
25 H -0.261 1.261
26 H 0.031 0.969
27 H 0.085 0.915
28 H 0.072 0.928
29 H 0.110 0.890
30 H 0.094 0.906
31 H 0.379 0.621
32 H 0.149 0.851
33 H 0.158 0.842
34 H 0.184 0.816
35 H 0.411 0.589
36 H 0.106 0.894
37 H 0.105 0.895
38 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.236 -11.612 -28.368 30.654
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C 0.042 3.958
3 H 0.082 0.918
4 C -0.176 4.176
5 C 0.119 3.881
6 H 0.121 0.879
7 O -0.364 6.364
8 C -0.338 4.338
9 C -0.171 4.171
10 C -0.174 4.174
11 C -0.352 4.352
12 S 0.369 5.631
13 N -0.348 5.348
14 C 0.322 3.678
15 O -0.450 6.450
16 C -0.279 4.279
17 S 0.074 5.926
18 C -0.694 4.694
19 H 0.100 0.900
20 C -0.193 4.193
21 N -0.548 5.548
22 Si 0.820 3.180
23 H -0.187 1.187
24 H -0.204 1.204
25 H -0.186 1.186
26 H 0.050 0.950
27 H 0.103 0.897
28 H 0.091 0.909
29 H 0.128 0.872
30 H 0.112 0.888
31 H 0.228 0.772
32 H 0.166 0.834
33 H 0.176 0.824
34 H 0.201 0.799
35 H 0.248 0.752
36 H 0.125 0.875
37 H 0.123 0.877
38 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -0.694 -10.276 -27.221 29.104
hybrid contribution 0.830 -1.069 -0.119 1.359
sum 0.136 -11.345 -27.340 29.601
Atomic orbital electron populations
1.22146 0.94483 1.02960 1.02166 1.20931 0.94367 0.96753 0.83774
0.91840 1.22560 0.94375 1.03059 0.97627 1.20360 0.91858 0.95911
0.79971 0.87905 1.86769 1.76027 1.25987 1.47629 1.25475 1.09859
0.97314 1.01142 1.20390 1.01865 1.02162 0.92677 1.20443 1.02986
0.92943 1.01053 1.25976 1.08850 1.00685 0.99651 1.84133 1.64585
1.04485 1.09918 1.45722 1.66814 1.14256 1.08055 1.19942 0.76562
0.86521 0.84735 1.90673 1.51190 1.17777 1.85341 1.23350 1.05240
1.03054 0.96210 1.85542 1.86637 1.17603 1.02820 1.23172 1.50926
0.98426 0.96858 0.90024 1.26145 0.95111 0.97236 1.00767 1.70186
1.46884 1.15511 1.22266 0.85001 0.79073 0.77748 0.76150 1.18707
1.20361 1.18579 0.94965 0.89659 0.90853 0.87197 0.88762 0.77221
0.83356 0.82440 0.79884 0.75172 0.87527 0.87713 0.92025
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.13 9.48 71.98 0.68 -2.45 16
2 C 0.15 3.08 2.57 44.99 0.12 3.20 16
3 H 0.06 1.71 7.58 -2.39 -0.02 1.69 16
4 C -0.14 -1.80 4.51 30.59 0.14 -1.66 16
5 C 0.18 2.96 3.41 29.85 0.10 3.06 16
6 H 0.10 1.98 8.12 -2.39 -0.02 1.96 16
7 O -0.56 -10.86 11.20 -148.98 -1.67 -12.53 16
8 C -0.22 -3.29 5.48 24.59 0.13 -3.16 16
9 C -0.14 -1.99 10.04 21.22 0.21 -1.78 16
10 C -0.14 -1.76 10.18 21.22 0.22 -1.54 16
11 C -0.22 -2.51 11.23 66.72 0.75 -1.76 16
12 S 0.11 1.34 22.64 -56.49 -1.28 0.07 16
13 N -0.69 -17.42 3.87 -442.54 -1.71 -19.13 16
14 C 0.54 20.33 7.81 87.66 0.68 21.02 16
15 O -0.57 -27.07 15.53 -3.05 -0.05 -27.12 16
16 C -0.13 -5.23 6.16 71.24 0.44 -4.79 16
17 S -0.15 -8.74 20.57 -56.49 -1.16 -9.90 16
18 C -0.55 -31.86 9.50 67.95 0.65 -31.21 16
19 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16
20 C 0.01 0.70 5.49 84.86 0.47 1.16 16
21 N -0.91 -57.03 13.22 21.65 0.29 -56.75 16
22 Si 1.00 44.30 29.55 68.60 2.03 46.32 16
23 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16
24 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16
25 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16
26 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16
27 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16
28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16
29 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16
30 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16
31 H 0.38 4.88 8.20 -74.06 -0.61 4.27 16
32 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16
33 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16
34 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16
35 H 0.41 7.59 7.53 -92.71 -0.70 6.89 16
36 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16
37 H 0.10 3.99 8.14 -2.39 -0.02 3.97 16
38 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16
Total: -1.00 -80.14 352.48 0.81 -79.33
By element:
Atomic # 1 Polarization: 19.84 SS G_CDS: -0.22 Total: 19.61 kcal
Atomic # 6 Polarization: -24.50 SS G_CDS: 4.59 Total: -19.91 kcal
Atomic # 7 Polarization: -74.45 SS G_CDS: -1.43 Total: -75.88 kcal
Atomic # 8 Polarization: -37.93 SS G_CDS: -1.72 Total: -39.64 kcal
Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal
Atomic # 16 Polarization: -7.40 SS G_CDS: -2.44 Total: -9.84 kcal
Total: -80.14 0.81 -79.33 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000269826775.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -6.845 kcal
(2) G-P(sol) polarization free energy of solvation -80.140 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.985 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.809 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.332 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.176 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds