Wall clock time and date at job start Tue Mar 31 2020 10:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47009 * 2 1 4 4 C 1.52995 * 109.47168 * 240.00283 * 2 1 3 5 5 C 1.52995 * 109.47176 * 174.99881 * 4 2 1 6 6 H 1.08995 * 109.47450 * 305.00083 * 5 4 2 7 7 O 1.42900 * 109.47215 * 64.99943 * 5 4 2 8 8 C 1.50707 * 109.47291 * 184.99823 * 5 4 2 9 9 C 1.33388 * 125.19940 * 100.00009 * 8 5 4 10 10 C 1.38433 * 114.91766 * 179.97438 * 9 8 5 11 11 C 1.33389 * 114.92022 * 0.02562 * 10 9 8 12 12 S 1.75879 * 125.20222 * 279.97535 * 8 5 4 13 13 N 1.46501 * 109.46955 * 120.00165 * 2 1 3 14 14 C 1.34776 * 120.00152 * 274.99560 * 13 2 1 15 15 O 1.21287 * 119.99765 * 0.02562 * 14 13 2 16 16 C 1.50697 * 120.00265 * 179.97438 * 14 13 2 17 17 S 1.80998 * 109.47211 * 180.02562 * 16 14 13 18 18 C 1.76198 * 100.00201 * 180.02562 * 17 16 14 19 19 H 1.08001 * 119.99551 * 359.97438 * 18 17 16 20 20 C 1.38796 * 120.00370 * 179.97438 * 18 17 16 21 21 N 1.31633 * 119.99758 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00206 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47200 * 59.99822 * 22 20 18 24 24 H 1.48496 * 109.47110 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46786 * 300.00075 * 22 20 18 26 26 H 1.08997 * 109.47461 * 299.99789 * 1 2 3 27 27 H 1.08996 * 109.47419 * 60.00110 * 1 2 3 28 28 H 1.08999 * 109.47009 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47529 * 54.99410 * 4 2 1 30 30 H 1.09009 * 109.47150 * 294.99842 * 4 2 1 31 31 H 0.96700 * 114.00108 * 60.00439 * 7 5 4 32 32 H 1.08000 * 122.54563 * 359.95533 * 9 8 5 33 33 H 1.07998 * 122.53579 * 180.02562 * 10 9 8 34 34 H 1.07995 * 125.20209 * 180.26467 * 11 10 9 35 35 H 0.96998 * 119.99943 * 95.00661 * 13 2 1 36 36 H 1.08994 * 109.47382 * 300.01087 * 16 14 13 37 37 H 1.09011 * 109.46526 * 60.00792 * 16 14 13 38 38 H 0.96998 * 119.99596 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 1 3.8570 0.4359 -1.2677 7 8 4.1392 -1.3164 -0.2102 8 6 4.0570 -1.2157 -2.6044 9 6 4.3983 -0.5260 -3.6939 10 6 4.8233 -1.2966 -4.7626 11 6 4.8265 -2.6119 -4.5410 12 16 4.2698 -2.9356 -2.9042 13 7 2.0183 -0.6907 1.1962 14 6 2.1471 -0.0183 2.3571 15 8 1.8583 1.1584 2.4117 16 6 2.6488 -0.7289 3.5877 17 16 2.7092 0.4340 4.9734 18 6 3.3125 -0.6312 6.2407 19 1 3.5217 -1.6676 6.0207 20 6 3.5187 -0.1383 7.5218 21 7 3.2632 1.1248 7.7900 22 14 4.1590 -1.2675 8.8651 23 1 5.4856 -1.8049 8.4696 24 1 4.2912 -0.5041 10.1320 25 1 3.2083 -2.3913 9.0618 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.6053 -0.2617 -2.1370 30 1 1.7516 -1.7715 -1.2056 31 1 3.9206 -2.2581 -0.1872 32 1 4.3468 0.5518 -3.7391 33 1 5.1290 -0.8654 -5.7044 34 1 5.1295 -3.3629 -5.2554 35 1 2.2491 -1.6318 1.1526 36 1 1.9760 -1.5507 3.8325 37 1 3.6481 -1.1214 3.3985 38 1 3.4070 1.4691 8.6853 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269826775.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:41 Heat of formation + Delta-G solvation = -86.176474 kcal Electronic energy + Delta-G solvation = -21087.470191 eV Core-core repulsion = 17760.655691 eV Total energy + Delta-G solvation = -3326.814501 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.85475 -39.45797 -37.98603 -36.26122 -34.57024 -33.25798 -31.69247 -29.94955 -28.76411 -27.63997 -25.50299 -23.48209 -22.48278 -21.55924 -20.32910 -19.80721 -18.82342 -17.84420 -17.39412 -16.90790 -16.86366 -16.55271 -16.24909 -16.01273 -15.48237 -15.01508 -14.75469 -14.54305 -14.30584 -13.94285 -13.77543 -13.58086 -13.25363 -13.15314 -13.04741 -12.86112 -12.81759 -12.74525 -12.58404 -12.47599 -11.92502 -11.71729 -11.63932 -11.25101 -11.11533 -10.82568 -10.25171 -9.97487 -9.59668 -9.37832 -8.64144 -8.32975 -6.10647 0.03778 0.66992 1.05512 1.29246 1.44550 1.48410 1.59062 1.73758 1.81503 2.28595 2.39820 3.00718 3.31848 3.37619 3.48794 3.86656 3.99812 4.07373 4.22147 4.25064 4.34484 4.45103 4.50678 4.55452 4.62145 4.67963 4.81894 4.84641 4.90094 5.11626 5.21126 5.31907 5.36252 5.42677 5.54925 5.64688 6.21088 6.61965 6.66172 7.07920 7.37796 8.76102 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.021445 B = 0.002690 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.343764 B =10405.481577 C =11211.154282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.146 3.854 3 H 0.063 0.937 4 C -0.138 4.138 5 C 0.180 3.820 6 H 0.103 0.897 7 O -0.558 6.558 8 C -0.220 4.220 9 C -0.140 4.140 10 C -0.144 4.144 11 C -0.216 4.216 12 S 0.105 5.895 13 N -0.695 5.695 14 C 0.537 3.463 15 O -0.571 6.571 16 C -0.127 4.127 17 S -0.153 6.153 18 C -0.546 4.546 19 H 0.082 0.918 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.262 1.262 24 H -0.279 1.279 25 H -0.261 1.261 26 H 0.031 0.969 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.379 0.621 32 H 0.149 0.851 33 H 0.158 0.842 34 H 0.184 0.816 35 H 0.411 0.589 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.236 -11.612 -28.368 30.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.042 3.958 3 H 0.082 0.918 4 C -0.176 4.176 5 C 0.119 3.881 6 H 0.121 0.879 7 O -0.364 6.364 8 C -0.338 4.338 9 C -0.171 4.171 10 C -0.174 4.174 11 C -0.352 4.352 12 S 0.369 5.631 13 N -0.348 5.348 14 C 0.322 3.678 15 O -0.450 6.450 16 C -0.279 4.279 17 S 0.074 5.926 18 C -0.694 4.694 19 H 0.100 0.900 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.187 1.187 24 H -0.204 1.204 25 H -0.186 1.186 26 H 0.050 0.950 27 H 0.103 0.897 28 H 0.091 0.909 29 H 0.128 0.872 30 H 0.112 0.888 31 H 0.228 0.772 32 H 0.166 0.834 33 H 0.176 0.824 34 H 0.201 0.799 35 H 0.248 0.752 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.694 -10.276 -27.221 29.104 hybrid contribution 0.830 -1.069 -0.119 1.359 sum 0.136 -11.345 -27.340 29.601 Atomic orbital electron populations 1.22146 0.94483 1.02960 1.02166 1.20931 0.94367 0.96753 0.83774 0.91840 1.22560 0.94375 1.03059 0.97627 1.20360 0.91858 0.95911 0.79971 0.87905 1.86769 1.76027 1.25987 1.47629 1.25475 1.09859 0.97314 1.01142 1.20390 1.01865 1.02162 0.92677 1.20443 1.02986 0.92943 1.01053 1.25976 1.08850 1.00685 0.99651 1.84133 1.64585 1.04485 1.09918 1.45722 1.66814 1.14256 1.08055 1.19942 0.76562 0.86521 0.84735 1.90673 1.51190 1.17777 1.85341 1.23350 1.05240 1.03054 0.96210 1.85542 1.86637 1.17603 1.02820 1.23172 1.50926 0.98426 0.96858 0.90024 1.26145 0.95111 0.97236 1.00767 1.70186 1.46884 1.15511 1.22266 0.85001 0.79073 0.77748 0.76150 1.18707 1.20361 1.18579 0.94965 0.89659 0.90853 0.87197 0.88762 0.77221 0.83356 0.82440 0.79884 0.75172 0.87527 0.87713 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 9.48 71.98 0.68 -2.45 16 2 C 0.15 3.08 2.57 44.99 0.12 3.20 16 3 H 0.06 1.71 7.58 -2.39 -0.02 1.69 16 4 C -0.14 -1.80 4.51 30.59 0.14 -1.66 16 5 C 0.18 2.96 3.41 29.85 0.10 3.06 16 6 H 0.10 1.98 8.12 -2.39 -0.02 1.96 16 7 O -0.56 -10.86 11.20 -148.98 -1.67 -12.53 16 8 C -0.22 -3.29 5.48 24.59 0.13 -3.16 16 9 C -0.14 -1.99 10.04 21.22 0.21 -1.78 16 10 C -0.14 -1.76 10.18 21.22 0.22 -1.54 16 11 C -0.22 -2.51 11.23 66.72 0.75 -1.76 16 12 S 0.11 1.34 22.64 -56.49 -1.28 0.07 16 13 N -0.69 -17.42 3.87 -442.54 -1.71 -19.13 16 14 C 0.54 20.33 7.81 87.66 0.68 21.02 16 15 O -0.57 -27.07 15.53 -3.05 -0.05 -27.12 16 16 C -0.13 -5.23 6.16 71.24 0.44 -4.79 16 17 S -0.15 -8.74 20.57 -56.49 -1.16 -9.90 16 18 C -0.55 -31.86 9.50 67.95 0.65 -31.21 16 19 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 20 C 0.01 0.70 5.49 84.86 0.47 1.16 16 21 N -0.91 -57.03 13.22 21.65 0.29 -56.75 16 22 Si 1.00 44.30 29.55 68.60 2.03 46.32 16 23 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 24 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 25 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 26 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.38 4.88 8.20 -74.06 -0.61 4.27 16 32 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 33 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 34 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 35 H 0.41 7.59 7.53 -92.71 -0.70 6.89 16 36 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 37 H 0.10 3.99 8.14 -2.39 -0.02 3.97 16 38 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -80.14 352.48 0.81 -79.33 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -0.22 Total: 19.61 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: 4.59 Total: -19.91 kcal Atomic # 7 Polarization: -74.45 SS G_CDS: -1.43 Total: -75.88 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -1.72 Total: -39.64 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: -7.40 SS G_CDS: -2.44 Total: -9.84 kcal Total: -80.14 0.81 -79.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269826775.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.845 kcal (2) G-P(sol) polarization free energy of solvation -80.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds