Wall clock time and date at job start Tue Mar 31 2020 10:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46875 * 2 1 4 4 C 1.52999 * 109.47524 * 120.00190 * 2 1 3 5 5 C 1.52999 * 109.47222 * 185.00123 * 4 2 1 6 6 H 1.09003 * 109.47077 * 54.99982 * 5 4 2 7 7 O 1.42900 * 109.47159 * 294.99864 * 5 4 2 8 8 C 1.50699 * 109.46846 * 175.00166 * 5 4 2 9 9 C 1.33397 * 125.20097 * 264.99874 * 8 5 4 10 10 C 1.38422 * 114.91984 * 179.97438 * 9 8 5 11 11 C 1.33397 * 114.92041 * 359.97438 * 10 9 8 12 12 S 1.75879 * 109.59479 * 359.75993 * 11 10 9 13 13 N 1.46499 * 109.47022 * 240.00416 * 2 1 3 14 14 C 1.34784 * 119.99971 * 84.99732 * 13 2 1 15 15 O 1.21274 * 119.99897 * 359.72827 * 14 13 2 16 16 C 1.50695 * 119.99635 * 179.97438 * 14 13 2 17 17 S 1.81006 * 109.46975 * 180.02562 * 16 14 13 18 18 C 1.76200 * 100.00155 * 179.97438 * 17 16 14 19 19 H 1.08005 * 119.99670 * 0.02562 * 18 17 16 20 20 C 1.38796 * 120.00050 * 180.02562 * 18 17 16 21 21 N 1.31626 * 119.99898 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00049 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47316 * 89.99758 * 22 20 18 24 24 H 1.48498 * 109.47135 * 209.99728 * 22 20 18 25 25 H 1.48505 * 109.47071 * 329.99777 * 22 20 18 26 26 H 1.09001 * 109.47831 * 59.99682 * 1 2 3 27 27 H 1.08996 * 109.47227 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47314 * 299.99734 * 1 2 3 29 29 H 1.09002 * 109.46897 * 305.00274 * 4 2 1 30 30 H 1.08995 * 109.47110 * 64.99598 * 4 2 1 31 31 H 0.96696 * 113.99826 * 300.00884 * 7 5 4 32 32 H 1.07998 * 122.54009 * 359.97438 * 9 8 5 33 33 H 1.07997 * 122.53884 * 180.02562 * 10 9 8 34 34 H 1.07998 * 125.20073 * 179.97438 * 11 10 9 35 35 H 0.96999 * 119.99984 * 264.99579 * 13 2 1 36 36 H 1.09005 * 109.47403 * 300.00056 * 16 14 13 37 37 H 1.09002 * 109.47422 * 60.00295 * 16 14 13 38 38 H 0.97005 * 120.00072 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.6132 1.3136 6 1 3.8570 0.4359 1.2677 7 8 4.1392 -1.3164 0.2101 8 6 4.0570 -1.2159 2.6042 9 6 4.3086 -0.5356 3.7237 10 6 4.7528 -1.3042 4.7858 11 6 4.8614 -2.6087 4.5290 12 16 4.3793 -2.9248 2.8674 13 7 2.0183 -0.6905 -1.1962 14 6 2.1469 -0.0181 -2.3572 15 8 1.8538 1.1574 -2.4128 16 6 2.6498 -0.7283 -3.5875 17 16 2.7112 0.4350 -4.9729 18 6 3.3156 -0.6298 -6.2400 19 1 3.5248 -1.6663 -6.0200 20 6 3.5229 -0.1366 -7.5207 21 7 3.2674 1.1265 -7.7888 22 14 4.1630 -1.2656 -8.8642 23 1 3.0178 -1.9024 -9.5629 24 1 4.9591 -0.4753 -9.8372 25 1 5.0209 -2.3167 -8.2603 26 1 -0.3635 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.6054 -0.2618 2.1369 30 1 1.7517 -1.7715 1.2055 31 1 3.9205 -2.2580 0.1869 32 1 4.1758 0.5337 3.7960 33 1 4.9924 -0.8800 5.7497 34 1 5.1913 -3.3568 5.2346 35 1 2.2490 -1.6317 -1.1527 36 1 3.6491 -1.1201 -3.3980 37 1 1.9776 -1.5506 -3.8326 38 1 3.4119 1.4712 -8.6840 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269826777.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:43 Heat of formation + Delta-G solvation = -86.161779 kcal Electronic energy + Delta-G solvation = -21088.619799 eV Core-core repulsion = 17761.805936 eV Total energy + Delta-G solvation = -3326.813863 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.85603 -39.46014 -37.98528 -36.26517 -34.57252 -33.25701 -31.69218 -29.94669 -28.75065 -27.64251 -25.51398 -23.47892 -22.47681 -21.55657 -20.32162 -19.81145 -18.83783 -17.84161 -17.39548 -16.89881 -16.86518 -16.55690 -16.24746 -16.01879 -15.48374 -15.00592 -14.75645 -14.54132 -14.30955 -13.94103 -13.77738 -13.57385 -13.25842 -13.14970 -13.04694 -12.88627 -12.81527 -12.73152 -12.57195 -12.47920 -11.91682 -11.70518 -11.64794 -11.25522 -11.12963 -10.82545 -10.24864 -9.97497 -9.58434 -9.37937 -8.64184 -8.33256 -6.10774 0.04130 0.66923 1.06008 1.29377 1.43037 1.48871 1.59843 1.73846 1.81817 2.28325 2.39880 3.00597 3.31912 3.37835 3.48006 3.86981 3.99982 4.07546 4.22153 4.25277 4.34532 4.45314 4.51071 4.55478 4.62206 4.68085 4.82029 4.84830 4.90378 5.11876 5.21162 5.32043 5.36429 5.42854 5.55165 5.64805 6.21175 6.61819 6.65854 7.07835 7.37843 8.76064 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.021381 B = 0.002696 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.274455 B =10385.120024 C =11218.200197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.146 3.854 3 H 0.063 0.937 4 C -0.137 4.137 5 C 0.180 3.820 6 H 0.103 0.897 7 O -0.558 6.558 8 C -0.220 4.220 9 C -0.141 4.141 10 C -0.144 4.144 11 C -0.217 4.217 12 S 0.104 5.896 13 N -0.695 5.695 14 C 0.537 3.463 15 O -0.571 6.571 16 C -0.127 4.127 17 S -0.154 6.154 18 C -0.545 4.545 19 H 0.082 0.918 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.267 1.267 24 H -0.278 1.278 25 H -0.258 1.258 26 H 0.031 0.969 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.379 0.621 32 H 0.150 0.850 33 H 0.158 0.842 34 H 0.184 0.816 35 H 0.411 0.589 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.267 -11.586 28.380 30.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.042 3.958 3 H 0.082 0.918 4 C -0.176 4.176 5 C 0.119 3.881 6 H 0.121 0.879 7 O -0.364 6.364 8 C -0.338 4.338 9 C -0.171 4.171 10 C -0.174 4.174 11 C -0.353 4.353 12 S 0.368 5.632 13 N -0.349 5.349 14 C 0.322 3.678 15 O -0.450 6.450 16 C -0.279 4.279 17 S 0.074 5.926 18 C -0.693 4.693 19 H 0.100 0.900 20 C -0.193 4.193 21 N -0.549 5.549 22 Si 0.821 3.179 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.182 1.182 26 H 0.050 0.950 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.128 0.872 30 H 0.112 0.888 31 H 0.228 0.772 32 H 0.167 0.833 33 H 0.176 0.824 34 H 0.201 0.799 35 H 0.248 0.752 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.605 -10.242 27.197 29.068 hybrid contribution 0.708 -1.082 0.146 1.301 sum 0.103 -11.324 27.343 29.596 Atomic orbital electron populations 1.22146 0.94487 1.02951 1.02167 1.20934 0.94363 0.96753 0.83777 0.91837 1.22554 0.94313 1.03068 0.97626 1.20361 0.91875 0.95906 0.79962 0.87894 1.86768 1.76000 1.25971 1.47671 1.25495 1.09920 0.97484 1.00867 1.20375 1.02269 1.02198 0.92285 1.20444 1.02694 0.93063 1.01172 1.25976 1.09184 1.00903 0.99193 1.84152 1.64880 1.05365 1.08819 1.45725 1.66817 1.14248 1.08072 1.19938 0.76586 0.86501 0.84728 1.90669 1.51110 1.17867 1.85318 1.23351 1.05234 1.03051 0.96215 1.85546 1.86599 1.17611 1.02882 1.23200 1.50788 0.98408 0.96866 0.90037 1.26143 0.95140 0.97228 1.00779 1.70190 1.46972 1.15488 1.22209 0.84943 0.78433 0.77736 0.76798 1.19220 1.20302 1.18221 0.94970 0.90866 0.89652 0.87167 0.88765 0.77235 0.83261 0.82424 0.79913 0.75175 0.87733 0.87515 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 9.48 71.98 0.68 -2.44 16 2 C 0.15 3.07 2.57 44.99 0.12 3.19 16 3 H 0.06 1.71 7.58 -2.38 -0.02 1.69 16 4 C -0.14 -1.78 4.51 30.59 0.14 -1.64 16 5 C 0.18 2.95 3.40 29.85 0.10 3.05 16 6 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 7 O -0.56 -10.84 11.16 -148.98 -1.66 -12.50 16 8 C -0.22 -3.29 5.52 24.59 0.14 -3.15 16 9 C -0.14 -1.97 10.05 21.22 0.21 -1.75 16 10 C -0.14 -1.74 10.18 21.22 0.22 -1.52 16 11 C -0.22 -2.53 11.23 66.72 0.75 -1.78 16 12 S 0.10 1.35 22.54 -56.49 -1.27 0.08 16 13 N -0.69 -17.40 3.87 -442.54 -1.71 -19.12 16 14 C 0.54 20.32 7.81 87.65 0.68 21.01 16 15 O -0.57 -27.04 15.53 -3.01 -0.05 -27.09 16 16 C -0.13 -5.23 6.16 71.23 0.44 -4.79 16 17 S -0.15 -8.76 20.57 -56.49 -1.16 -9.92 16 18 C -0.54 -31.78 9.50 67.95 0.65 -31.14 16 19 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 20 C 0.01 0.67 5.49 84.86 0.47 1.14 16 21 N -0.91 -57.01 13.22 21.65 0.29 -56.73 16 22 Si 1.00 44.33 29.55 68.60 2.03 46.36 16 23 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 24 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 26 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 29 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.38 4.89 8.14 -74.06 -0.60 4.28 16 32 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 33 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 34 H 0.18 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.41 7.59 7.53 -92.71 -0.70 6.89 16 36 H 0.10 3.99 8.14 -2.39 -0.02 3.97 16 37 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 38 H 0.27 15.68 8.31 -92.70 -0.77 14.91 16 Total: -1.00 -80.16 352.34 0.83 -79.33 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -0.22 Total: 19.42 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: 4.59 Total: -19.83 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -1.43 Total: -75.85 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -1.71 Total: -39.60 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: -7.41 SS G_CDS: -2.44 Total: -9.84 kcal Total: -80.16 0.83 -79.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269826777.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.829 kcal (2) G-P(sol) polarization free energy of solvation -80.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds