Wall clock time and date at job start Tue Mar 31 2020 10:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.53006 * 109.47164 * 239.99966 * 2 1 3 5 5 C 1.52995 * 109.47234 * 175.00265 * 4 2 1 6 6 H 1.09004 * 109.47589 * 54.99928 * 5 4 2 7 7 O 1.42903 * 109.47194 * 295.00062 * 5 4 2 8 8 C 1.50700 * 109.47193 * 174.99945 * 5 4 2 9 9 C 1.33392 * 125.20202 * 264.99643 * 8 5 4 10 10 C 1.38419 * 114.91786 * 179.97438 * 9 8 5 11 11 C 1.33392 * 114.92531 * 0.02562 * 10 9 8 12 12 S 1.75880 * 125.20262 * 84.69318 * 8 5 4 13 13 N 1.46504 * 109.47417 * 120.00052 * 2 1 3 14 14 C 1.34774 * 119.99618 * 275.00242 * 13 2 1 15 15 O 1.21281 * 120.00442 * 359.97438 * 14 13 2 16 16 C 1.50698 * 119.99927 * 179.97438 * 14 13 2 17 17 S 1.81005 * 109.47336 * 179.97438 * 16 14 13 18 18 C 1.76203 * 99.99914 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00239 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99809 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00024 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99903 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47284 * 90.00030 * 22 20 18 24 24 H 1.48504 * 109.46801 * 209.99953 * 22 20 18 25 25 H 1.48499 * 109.46976 * 329.99676 * 22 20 18 26 26 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 27 27 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 29 29 H 1.09007 * 109.46744 * 294.99886 * 4 2 1 30 30 H 1.08995 * 109.46794 * 55.00131 * 4 2 1 31 31 H 0.96705 * 113.99478 * 299.99652 * 7 5 4 32 32 H 1.08004 * 122.53763 * 0.02562 * 9 8 5 33 33 H 1.08008 * 122.53451 * 179.97438 * 10 9 8 34 34 H 1.07994 * 125.20153 * 180.02562 * 11 10 9 35 35 H 0.96990 * 120.00057 * 94.99539 * 13 2 1 36 36 H 1.09005 * 109.46834 * 299.99458 * 16 14 13 37 37 H 1.08998 * 109.47729 * 59.99510 * 16 14 13 38 38 H 0.97002 * 119.99832 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 1 3.9954 -0.9924 -0.3868 7 8 3.9386 0.7548 -1.4880 8 6 4.0773 -1.4260 -2.4748 9 6 4.5166 -2.6832 -2.3990 10 6 4.9389 -3.2268 -3.5999 11 6 4.8431 -2.4109 -4.6508 12 16 4.1806 -0.8643 -4.1383 13 7 2.0184 -0.6906 1.1962 14 6 2.1471 -0.0182 2.3571 15 8 1.8590 1.1586 2.4115 16 6 2.6489 -0.7287 3.5877 17 16 2.7106 0.4346 4.9731 18 6 3.3123 -0.6310 6.2408 19 1 3.5203 -1.6679 6.0212 20 6 3.5190 -0.1380 7.5217 21 7 3.9680 -0.9341 8.4688 22 14 3.1586 1.6552 7.9017 23 1 1.7479 1.7935 8.3443 24 1 4.0644 2.1241 8.9811 25 1 3.3773 2.4733 6.6818 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.7516 -1.7716 -1.2055 30 1 1.6054 -0.2617 -2.1369 31 1 3.5896 1.1581 -2.2948 32 1 4.5401 -3.2354 -1.4711 33 1 5.3181 -4.2350 -3.6797 34 1 5.1244 -2.6632 -5.6625 35 1 2.2490 -1.6317 1.1526 36 1 1.9759 -1.5505 3.8326 37 1 3.6480 -1.1213 3.3987 38 1 4.1129 -0.5894 9.3639 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269826781.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:48 Heat of formation + Delta-G solvation = -63.226022 kcal Electronic energy + Delta-G solvation = -21018.139194 eV Core-core repulsion = 17692.319899 eV Total energy + Delta-G solvation = -3325.819294 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.77516 -38.68718 -37.29654 -35.43731 -32.42468 -32.07422 -31.00369 -28.73058 -28.11391 -25.59625 -24.90421 -22.81058 -21.57585 -20.38158 -19.80100 -18.29773 -17.82841 -16.64125 -16.41845 -16.03595 -15.82731 -15.19390 -15.00254 -14.87806 -14.35702 -13.97195 -13.68682 -13.33432 -13.19757 -13.06798 -12.81692 -12.77343 -12.54634 -12.16909 -12.07557 -11.89453 -11.81885 -11.24349 -11.15055 -11.04157 -10.98917 -10.58361 -10.53232 -9.83678 -9.46137 -9.12823 -8.98879 -8.90464 -8.84866 -8.47446 -6.89228 -6.27326 -3.98597 0.58011 1.19600 1.57959 2.35371 2.79286 3.02604 3.32519 3.35984 3.52776 3.67867 4.01100 4.08483 4.35060 4.53324 4.67084 4.73063 4.76982 4.82924 5.09593 5.11855 5.16997 5.22880 5.28112 5.36525 5.43357 5.55765 5.61252 5.74467 5.79031 5.88494 6.00647 6.03433 6.07571 6.15188 6.60921 7.20286 7.64504 7.95807 8.43101 8.54592 9.19076 10.81942 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.022955 B = 0.002669 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.494283 B =10490.255185 C =11034.999970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.146 3.854 3 H 0.097 0.903 4 C -0.153 4.153 5 C 0.177 3.823 6 H 0.120 0.880 7 O -0.542 6.542 8 C -0.208 4.208 9 C -0.132 4.132 10 C -0.132 4.132 11 C -0.214 4.214 12 S 0.101 5.899 13 N -0.733 5.733 14 C 0.533 3.467 15 O -0.516 6.516 16 C -0.125 4.125 17 S -0.141 6.141 18 C -0.521 4.521 19 H 0.088 0.912 20 C 0.095 3.905 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.235 1.235 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.370 0.630 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.164 0.836 35 H 0.396 0.604 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.160 -4.339 -28.636 29.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.041 3.959 3 H 0.115 0.885 4 C -0.192 4.192 5 C 0.116 3.884 6 H 0.137 0.863 7 O -0.346 6.346 8 C -0.325 4.325 9 C -0.162 4.162 10 C -0.163 4.163 11 C -0.349 4.349 12 S 0.364 5.636 13 N -0.388 5.388 14 C 0.318 3.682 15 O -0.390 6.390 16 C -0.275 4.275 17 S 0.085 5.915 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.518 5.518 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.159 1.159 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.217 0.783 32 H 0.160 0.840 33 H 0.159 0.841 34 H 0.182 0.818 35 H 0.230 0.770 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.625 -1.148 -28.547 28.690 hybrid contribution 0.490 -2.716 0.417 2.791 sum -2.135 -3.863 -28.130 28.474 Atomic orbital electron populations 1.22186 0.95251 1.02053 1.02720 1.20838 0.93805 0.98164 0.83064 0.88506 1.22648 0.95101 1.02626 0.98832 1.20444 0.93284 0.80610 0.94081 0.86251 1.86755 1.77088 1.23939 1.46828 1.25549 1.08681 0.99845 0.98455 1.20137 1.01698 0.94644 0.99770 1.20218 1.02864 1.01398 0.91795 1.25625 1.08984 0.96884 1.03415 1.84137 1.62747 1.15952 1.00742 1.46055 1.69363 1.13750 1.09594 1.20239 0.76892 0.87227 0.83797 1.90697 1.48279 1.15672 1.84381 1.23286 1.04418 1.03431 0.96386 1.84799 1.87174 1.16493 1.03033 1.22322 1.50562 0.98651 0.95293 0.89428 1.24716 0.93375 0.98296 0.94961 1.69939 1.43554 1.35776 1.02514 0.86734 0.79274 0.85268 0.80580 1.19234 1.19966 1.15864 0.91950 0.92577 0.91522 0.89894 0.89871 0.78296 0.83953 0.84091 0.81828 0.77005 0.88601 0.88558 0.91963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.48 37.16 0.35 -1.29 16 2 C 0.15 1.56 2.53 -67.93 -0.17 1.38 16 3 H 0.10 1.29 7.13 -51.93 -0.37 0.92 16 4 C -0.15 -1.15 4.41 -26.73 -0.12 -1.27 16 5 C 0.18 1.58 3.35 -27.89 -0.09 1.48 16 6 H 0.12 1.18 7.61 -51.93 -0.40 0.78 16 7 O -0.54 -5.71 12.70 -35.23 -0.45 -6.16 16 8 C -0.21 -1.73 5.52 -36.00 -0.20 -1.93 16 9 C -0.13 -1.05 10.05 -41.21 -0.41 -1.47 16 10 C -0.13 -0.95 10.18 -41.21 -0.42 -1.37 16 11 C -0.21 -1.47 11.23 29.04 0.33 -1.15 16 12 S 0.10 0.74 22.53 -107.50 -2.42 -1.69 16 13 N -0.73 -8.92 4.45 -53.80 -0.24 -9.16 16 14 C 0.53 9.34 7.81 -10.99 -0.09 9.25 16 15 O -0.52 -11.09 15.52 5.56 0.09 -11.01 16 16 C -0.12 -2.40 6.16 36.00 0.22 -2.18 16 17 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 18 C -0.52 -15.07 10.04 30.94 0.31 -14.76 16 19 H 0.09 2.64 8.03 -52.48 -0.42 2.22 16 20 C 0.10 2.80 5.50 -17.43 -0.10 2.70 16 21 N -0.88 -26.74 13.97 55.49 0.78 -25.97 16 22 Si 0.86 21.97 27.74 -169.99 -4.72 17.25 16 23 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 24 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.23 -6.02 6.74 56.52 0.38 -5.64 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.37 2.71 8.40 45.56 0.38 3.09 16 32 H 0.14 0.95 8.06 -52.48 -0.42 0.53 16 33 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 34 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 35 H 0.40 3.66 8.60 -40.82 -0.35 3.30 16 36 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 37 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 38 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 351.91 15.07 5.30 5.30 Total: -1.00 -35.21 351.91 -8.58 -43.79 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -4.54 Total: 3.83 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -0.39 Total: -10.59 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.54 Total: -35.12 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.36 Total: -17.16 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.72 Total: 17.25 kcal Atomic # 16 Polarization: -2.87 SS G_CDS: -4.42 Total: -7.29 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.21 -8.58 -43.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269826781.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.438 kcal (2) G-P(sol) polarization free energy of solvation -35.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds