Wall clock time and date at job start Tue Mar 31 2020 10:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47375 * 2 1 4 4 C 1.53006 * 109.47164 * 239.99966 * 2 1 3 5 5 C 1.52995 * 109.47234 * 175.00265 * 4 2 1 6 6 H 1.09004 * 109.47589 * 54.99928 * 5 4 2 7 7 O 1.42903 * 109.47194 * 295.00062 * 5 4 2 8 8 C 1.50700 * 109.47193 * 174.99945 * 5 4 2 9 9 C 1.33392 * 125.20202 * 264.99643 * 8 5 4 10 10 C 1.38419 * 114.91786 * 179.97438 * 9 8 5 11 11 C 1.33392 * 114.92531 * 0.02562 * 10 9 8 12 12 S 1.75880 * 125.20262 * 84.69318 * 8 5 4 13 13 N 1.46504 * 109.47417 * 120.00052 * 2 1 3 14 14 C 1.34774 * 119.99618 * 275.00242 * 13 2 1 15 15 O 1.21281 * 120.00442 * 359.97438 * 14 13 2 16 16 C 1.50698 * 119.99927 * 179.97438 * 14 13 2 17 17 S 1.81005 * 109.47336 * 179.97438 * 16 14 13 18 18 C 1.76203 * 99.99914 * 179.97438 * 17 16 14 19 19 H 1.08004 * 120.00239 * 359.97438 * 18 17 16 20 20 C 1.38798 * 119.99809 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00024 * 179.97438 * 20 18 17 22 22 Si 1.86805 * 119.99903 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.47284 * 90.00030 * 22 20 18 24 24 H 1.48504 * 109.46801 * 209.99953 * 22 20 18 25 25 H 1.48499 * 109.46976 * 329.99676 * 22 20 18 26 26 H 1.09000 * 109.47140 * 59.99983 * 1 2 3 27 27 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46777 * 300.00555 * 1 2 3 29 29 H 1.09007 * 109.46744 * 294.99886 * 4 2 1 30 30 H 1.08995 * 109.46794 * 55.00131 * 4 2 1 31 31 H 0.96705 * 113.99478 * 299.99652 * 7 5 4 32 32 H 1.08004 * 122.53763 * 0.02562 * 9 8 5 33 33 H 1.08008 * 122.53451 * 179.97438 * 10 9 8 34 34 H 1.07994 * 125.20153 * 180.02562 * 11 10 9 35 35 H 0.96990 * 120.00057 * 94.99539 * 13 2 1 36 36 H 1.09005 * 109.46834 * 299.99458 * 16 14 13 37 37 H 1.08998 * 109.47729 * 59.99510 * 16 14 13 38 38 H 0.97002 * 119.99832 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6134 -1.3137 6 1 3.9954 -0.9924 -0.3868 7 8 3.9386 0.7548 -1.4880 8 6 4.0773 -1.4260 -2.4748 9 6 4.5166 -2.6832 -2.3990 10 6 4.9389 -3.2268 -3.5999 11 6 4.8431 -2.4109 -4.6508 12 16 4.1806 -0.8643 -4.1383 13 7 2.0184 -0.6906 1.1962 14 6 2.1471 -0.0182 2.3571 15 8 1.8590 1.1586 2.4115 16 6 2.6489 -0.7287 3.5877 17 16 2.7106 0.4346 4.9731 18 6 3.3123 -0.6310 6.2408 19 1 3.5203 -1.6679 6.0212 20 6 3.5190 -0.1380 7.5217 21 7 3.9680 -0.9341 8.4688 22 14 3.1586 1.6552 7.9017 23 1 1.7479 1.7935 8.3443 24 1 4.0644 2.1241 8.9811 25 1 3.3773 2.4733 6.6818 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.7516 -1.7716 -1.2055 30 1 1.6054 -0.2617 -2.1369 31 1 3.5896 1.1581 -2.2948 32 1 4.5401 -3.2354 -1.4711 33 1 5.3181 -4.2350 -3.6797 34 1 5.1244 -2.6632 -5.6625 35 1 2.2490 -1.6317 1.1526 36 1 1.9759 -1.5505 3.8326 37 1 3.6480 -1.1213 3.3987 38 1 4.1129 -0.5894 9.3639 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269826781.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:47 Heat of formation + Delta-G solvation = -88.878226 kcal Electronic energy + Delta-G solvation = -21019.251557 eV Core-core repulsion = 17692.319899 eV Total energy + Delta-G solvation = -3326.931657 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.92152 -39.51213 -37.98464 -36.47276 -34.67223 -33.15991 -31.80447 -30.07412 -28.78849 -27.84644 -25.52759 -23.49493 -22.55562 -21.56493 -20.37597 -19.88578 -18.89899 -17.99518 -17.34908 -17.08170 -16.85215 -16.65806 -16.26813 -16.06826 -15.58834 -15.04394 -14.97191 -14.76092 -14.36127 -14.02264 -13.83160 -13.58281 -13.35021 -13.28416 -13.16033 -13.01005 -12.82115 -12.80219 -12.61349 -12.47085 -11.88983 -11.84688 -11.67982 -11.25906 -11.17057 -10.93506 -10.52568 -10.14506 -9.59285 -9.38966 -8.98908 -8.51628 -6.21913 0.03016 0.65706 0.99933 1.04820 1.31040 1.47333 1.56688 1.61785 1.81270 2.23782 2.28657 2.73083 2.86668 3.34119 3.44462 3.83125 3.88840 4.08723 4.13032 4.24058 4.25576 4.42352 4.47182 4.48937 4.62458 4.67372 4.78795 4.81820 4.94629 5.12423 5.20074 5.31071 5.35756 5.53841 5.55816 5.70874 6.11380 6.51367 6.61123 6.93833 7.25500 8.60804 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.022955 B = 0.002669 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.494283 B =10490.255185 C =11034.999970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.146 3.854 3 H 0.070 0.930 4 C -0.139 4.139 5 C 0.178 3.822 6 H 0.107 0.893 7 O -0.566 6.566 8 C -0.223 4.223 9 C -0.139 4.139 10 C -0.144 4.144 11 C -0.215 4.215 12 S 0.103 5.897 13 N -0.708 5.708 14 C 0.536 3.464 15 O -0.561 6.561 16 C -0.112 4.112 17 S -0.178 6.178 18 C -0.527 4.527 19 H 0.062 0.938 20 C 0.045 3.955 21 N -0.917 5.917 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.259 1.259 25 H -0.238 1.238 26 H 0.084 0.916 27 H 0.073 0.927 28 H 0.034 0.966 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.382 0.618 32 H 0.151 0.849 33 H 0.158 0.842 34 H 0.184 0.816 35 H 0.414 0.586 36 H 0.113 0.887 37 H 0.111 0.889 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.656 -4.917 -30.909 31.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.042 3.958 3 H 0.088 0.912 4 C -0.177 4.177 5 C 0.117 3.883 6 H 0.124 0.876 7 O -0.372 6.372 8 C -0.340 4.340 9 C -0.169 4.169 10 C -0.175 4.175 11 C -0.351 4.351 12 S 0.366 5.634 13 N -0.362 5.362 14 C 0.322 3.678 15 O -0.439 6.439 16 C -0.263 4.263 17 S 0.049 5.951 18 C -0.675 4.675 19 H 0.081 0.919 20 C -0.160 4.160 21 N -0.555 5.555 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.162 1.162 26 H 0.102 0.898 27 H 0.092 0.908 28 H 0.053 0.947 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.231 0.769 32 H 0.169 0.831 33 H 0.176 0.824 34 H 0.202 0.798 35 H 0.251 0.749 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.122 -1.771 -30.863 31.071 hybrid contribution 0.666 -2.655 0.950 2.897 sum -2.456 -4.426 -29.914 30.339 Atomic orbital electron populations 1.22142 0.94342 1.03009 1.02249 1.20952 0.94422 0.97127 0.83340 0.91212 1.22552 0.94116 1.03478 0.97550 1.20393 0.94001 0.80004 0.93950 0.87583 1.86714 1.77682 1.24975 1.47864 1.25478 1.09733 1.00042 0.98748 1.20387 1.01303 0.94688 1.00560 1.20458 1.03071 1.02353 0.91571 1.25977 1.08257 0.96411 1.04431 1.84113 1.62778 1.16364 1.00110 1.45847 1.67428 1.14460 1.08468 1.19914 0.76784 0.86585 0.84563 1.90687 1.50654 1.17455 1.85106 1.23284 1.06072 1.02239 0.94662 1.84741 1.86981 1.18521 1.04865 1.22461 1.50268 0.98124 0.96635 0.91929 1.25562 0.93284 1.02243 0.94947 1.70015 1.44668 1.37676 1.03178 0.85871 0.79560 0.80456 0.80515 1.18653 1.18340 1.16169 0.89750 0.90839 0.94721 0.87900 0.87953 0.76940 0.83112 0.82448 0.79845 0.74892 0.86833 0.87029 0.91374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.48 71.98 0.68 -2.20 16 2 C 0.15 2.86 2.53 44.99 0.11 2.97 16 3 H 0.07 1.82 7.13 -2.39 -0.02 1.80 16 4 C -0.14 -1.71 4.41 30.59 0.14 -1.58 16 5 C 0.18 2.88 3.35 29.85 0.10 2.98 16 6 H 0.11 1.95 7.61 -2.38 -0.02 1.93 16 7 O -0.57 -11.46 12.70 -148.98 -1.89 -13.35 16 8 C -0.22 -3.29 5.52 24.59 0.14 -3.16 16 9 C -0.14 -1.93 10.05 21.22 0.21 -1.71 16 10 C -0.14 -1.76 10.18 21.22 0.22 -1.54 16 11 C -0.22 -2.47 11.23 66.72 0.75 -1.72 16 12 S 0.10 1.31 22.53 -56.49 -1.27 0.03 16 13 N -0.71 -16.04 4.45 -442.52 -1.97 -18.01 16 14 C 0.54 18.41 7.81 87.66 0.68 19.09 16 15 O -0.56 -24.24 15.52 -3.03 -0.05 -24.29 16 16 C -0.11 -4.21 6.16 71.24 0.44 -3.77 16 17 S -0.18 -9.09 18.55 -56.49 -1.05 -10.14 16 18 C -0.53 -30.94 10.04 67.95 0.68 -30.26 16 19 H 0.06 3.86 8.03 -2.91 -0.02 3.83 16 20 C 0.04 2.66 5.50 84.86 0.47 3.13 16 21 N -0.92 -56.27 13.97 21.65 0.30 -55.96 16 22 Si 0.91 45.57 27.74 68.60 1.90 47.48 16 23 H -0.26 -12.71 7.11 99.48 0.71 -12.01 16 24 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.24 -11.89 6.74 99.48 0.67 -11.22 16 26 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.38 5.22 8.40 -74.05 -0.62 4.60 16 32 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 33 H 0.16 1.29 8.06 -2.91 -0.02 1.27 16 34 H 0.18 1.23 8.06 -2.91 -0.02 1.21 16 35 H 0.41 6.56 8.60 -92.72 -0.80 5.76 16 36 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 37 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 38 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -77.23 351.91 0.22 -77.01 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -0.37 Total: 15.00 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: 4.62 Total: -17.77 kcal Atomic # 7 Polarization: -72.31 SS G_CDS: -1.67 Total: -73.97 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -1.94 Total: -37.64 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.90 Total: 47.48 kcal Atomic # 16 Polarization: -7.78 SS G_CDS: -2.32 Total: -10.10 kcal Total: -77.23 0.22 -77.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269826781.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.872 kcal (2) G-P(sol) polarization free energy of solvation -77.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds