Wall clock time and date at job start Tue Mar 31 2020 10:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46779 * 2 1 4 4 O 1.42894 * 109.47146 * 120.00361 * 2 1 3 5 5 C 1.35971 * 116.99780 * 275.00029 * 4 2 1 6 6 C 1.38685 * 120.03636 * 5.48756 * 5 4 2 7 7 C 1.38163 * 119.98420 * 180.25349 * 6 5 4 8 8 C 1.38465 * 120.04884 * 359.47647 * 7 6 5 9 9 F 1.35097 * 119.96546 * 180.25177 * 8 7 6 10 10 C 1.38435 * 120.07074 * 0.27116 * 8 7 6 11 11 C 1.38265 * 120.01766 * 359.97438 * 10 8 7 12 12 Cl 1.73598 * 120.02948 * 180.02562 * 11 10 8 13 13 C 1.50703 * 109.46964 * 240.00344 * 2 1 3 14 14 O 1.21285 * 119.99533 * 244.99865 * 13 2 1 15 15 N 1.34777 * 120.00123 * 64.99546 * 13 2 1 16 16 C 1.46498 * 120.00015 * 179.97438 * 15 13 2 17 17 C 1.52995 * 109.47048 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.47155 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99827 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00217 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99956 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99950 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47197 * 89.99711 * 22 20 18 24 24 H 1.48497 * 109.46832 * 209.99813 * 22 20 18 25 25 H 1.48504 * 109.47098 * 329.99281 * 22 20 18 26 26 H 1.09004 * 109.47239 * 299.99577 * 1 2 3 27 27 H 1.08994 * 109.47793 * 60.00092 * 1 2 3 28 28 H 1.09010 * 109.46968 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.00831 * 0.02592 * 6 5 4 30 30 H 1.07993 * 119.97221 * 179.74648 * 7 6 5 31 31 H 1.07997 * 119.99670 * 180.02562 * 10 8 7 32 32 H 0.97000 * 119.99845 * 0.02562 * 15 13 2 33 33 H 1.09000 * 109.47165 * 300.00581 * 16 15 13 34 34 H 1.09002 * 109.47099 * 59.99787 * 16 15 13 35 35 H 1.08997 * 109.47230 * 299.99793 * 17 16 15 36 36 H 1.08999 * 109.47178 * 60.00590 * 17 16 15 37 37 H 0.97002 * 119.99978 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.1125 0.0629 2.3047 6 6 1.6594 1.3734 2.3281 7 6 1.7726 2.1226 3.4835 8 6 2.3283 1.5625 4.6213 9 9 2.4335 2.2949 5.7516 10 6 2.7766 0.2529 4.6019 11 6 2.6693 -0.4978 3.4457 12 17 3.2308 -2.1403 3.4212 13 6 2.0323 -0.7104 -1.2305 14 8 2.6530 -1.7467 -1.1215 15 7 1.7918 -0.1941 -2.4521 16 6 2.2806 -0.8844 -3.6482 17 6 1.8762 -0.0939 -4.8942 18 6 2.3784 -0.8043 -6.1247 19 1 2.9312 -1.7271 -6.0277 20 6 2.1332 -0.2757 -7.3743 21 7 1.4605 0.8482 -7.4924 22 14 2.7552 -1.1567 -8.8996 23 1 1.7230 -2.1128 -9.3745 24 1 3.0363 -0.1619 -9.9656 25 1 4.0008 -1.8956 -8.5711 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 1.2214 1.8094 1.4424 30 1 1.4234 3.1443 3.5003 31 1 3.2095 -0.1829 5.4902 32 1 1.2957 0.6349 -2.5391 33 1 3.3669 -0.9622 -3.6044 34 1 1.8464 -1.8831 -3.6943 35 1 0.7899 -0.0158 -4.9382 36 1 2.3107 0.9046 -4.8479 37 1 1.2876 1.2199 -8.3716 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273073957.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:55 Heat of formation + Delta-G solvation = -108.277903 kcal Electronic energy + Delta-G solvation = -22850.332203 eV Core-core repulsion = 18954.302430 eV Total energy + Delta-G solvation = -3896.029773 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.24076 -40.90662 -39.28920 -37.58197 -36.61694 -34.97080 -33.13805 -32.30827 -31.35960 -29.77976 -29.36178 -25.48497 -24.47361 -23.58171 -22.64418 -21.09620 -20.21366 -18.93206 -17.85932 -17.67530 -16.62646 -16.34748 -16.17789 -15.81084 -15.46147 -15.20941 -14.82224 -14.70226 -14.54360 -14.12109 -13.87561 -13.62027 -13.34322 -13.04423 -12.86355 -12.57270 -12.34963 -12.14353 -11.73431 -11.46490 -11.27972 -11.23387 -11.13336 -11.07089 -10.69106 -10.41282 -9.86913 -9.55737 -9.46101 -9.26705 -8.66576 -8.48184 -8.44170 -6.14983 -4.17948 0.51571 0.66897 1.79751 2.42826 2.74818 2.97072 3.26336 3.32729 3.36698 3.59881 3.85352 4.17647 4.27204 4.37409 4.44390 4.62985 4.65356 4.75245 4.84937 5.07007 5.22485 5.29635 5.32585 5.40020 5.57380 5.59173 5.81292 6.12612 6.22197 6.25364 6.63399 6.72971 6.85347 7.43489 7.53159 7.80673 7.83655 8.20288 8.45146 8.87852 9.47376 10.96575 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.026426 B = 0.002361 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.327824 B =11855.947732 C =12541.041317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.062 3.938 3 H 0.099 0.901 4 O -0.267 6.267 5 C 0.137 3.863 6 C -0.175 4.175 7 C -0.105 4.105 8 C 0.069 3.931 9 F -0.135 7.135 10 C -0.107 4.107 11 C -0.045 4.045 12 Cl -0.036 7.036 13 C 0.510 3.490 14 O -0.522 6.522 15 N -0.716 5.716 16 C 0.123 3.877 17 C 0.013 3.987 18 C -0.523 4.523 19 H 0.060 0.940 20 C 0.059 3.941 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.272 1.272 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.151 0.849 30 H 0.146 0.854 31 H 0.152 0.848 32 H 0.398 0.602 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.023 0.977 36 H 0.023 0.977 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.193 4.068 24.232 24.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.002 3.998 3 H 0.117 0.883 4 O -0.179 6.179 5 C 0.090 3.910 6 C -0.194 4.194 7 C -0.124 4.124 8 C 0.049 3.951 9 F -0.114 7.114 10 C -0.127 4.127 11 C -0.072 4.072 12 Cl -0.007 7.007 13 C 0.293 3.707 14 O -0.397 6.397 15 N -0.368 5.368 16 C 0.001 3.999 17 C -0.024 4.024 18 C -0.561 4.561 19 H 0.078 0.922 20 C -0.142 4.142 21 N -0.533 5.533 22 Si 0.725 3.275 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.197 1.197 26 H 0.092 0.908 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.169 0.831 30 H 0.163 0.837 31 H 0.170 0.830 32 H 0.232 0.768 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.041 0.959 36 H 0.041 0.959 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.695 3.082 24.150 24.404 hybrid contribution 0.020 0.273 -0.791 0.837 sum -1.675 3.355 23.359 23.658 Atomic orbital electron populations 1.22356 0.92267 1.04864 1.03965 1.22418 0.96050 0.97162 0.84171 0.88298 1.86351 1.80212 1.36065 1.15234 1.18779 0.95051 0.90417 0.86772 1.21186 1.05102 0.93025 1.00070 1.21045 0.98958 1.01168 0.91193 1.17296 1.04363 0.89880 0.83556 1.91519 1.94415 1.76570 1.48891 1.20832 1.01196 0.92606 0.98033 1.19871 1.05110 0.89210 0.93031 1.98413 1.87455 1.16204 1.98612 1.19872 0.80876 0.85871 0.84102 1.90745 1.39640 1.23019 1.86313 1.46222 1.57037 1.27714 1.05780 1.21798 0.98629 0.96472 0.82993 1.19328 0.97389 0.95637 0.90084 1.21038 1.35765 1.08794 0.90533 0.92197 1.24991 0.95014 0.94950 0.99285 1.69947 1.40057 1.19336 1.23963 0.86504 0.79355 0.79349 0.82322 1.20520 1.21141 1.19699 0.90804 0.89606 0.90332 0.83127 0.83665 0.83039 0.76816 0.92305 0.92266 0.95856 0.95871 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.55 9.13 37.16 0.34 -1.22 16 2 C 0.06 0.71 2.63 -27.88 -0.07 0.63 16 3 H 0.10 0.85 6.31 -51.93 -0.33 0.52 16 4 O -0.27 -3.55 8.80 -39.51 -0.35 -3.89 16 5 C 0.14 1.50 6.59 -39.21 -0.26 1.25 16 6 C -0.18 -1.43 8.24 -39.44 -0.33 -1.75 16 7 C -0.10 -0.78 10.02 -39.53 -0.40 -1.18 16 8 C 0.07 0.59 7.30 -39.43 -0.29 0.31 16 9 F -0.14 -1.23 17.27 2.25 0.04 -1.19 16 10 C -0.11 -0.96 9.80 -39.50 -0.39 -1.34 16 11 C -0.04 -0.48 6.33 -39.36 -0.25 -0.73 16 12 Cl -0.04 -0.43 28.50 -51.86 -1.48 -1.90 16 13 C 0.51 8.18 7.18 -10.98 -0.08 8.10 16 14 O -0.52 -10.80 16.51 -14.31 -0.24 -11.03 16 15 N -0.72 -11.37 5.52 -60.30 -0.33 -11.70 16 16 C 0.12 2.48 5.61 -4.05 -0.02 2.46 16 17 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 18 C -0.52 -14.10 9.11 -34.44 -0.31 -14.42 16 19 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -25.48 13.29 55.43 0.74 -24.75 16 22 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 H 0.07 0.50 6.91 -51.93 -0.36 0.14 16 27 H 0.09 0.64 7.92 -51.93 -0.41 0.22 16 28 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 29 H 0.15 0.89 5.42 -52.49 -0.28 0.61 16 30 H 0.15 0.74 8.06 -52.49 -0.42 0.31 16 31 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.40 5.15 8.26 -40.82 -0.34 4.81 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 340.94 15.07 5.14 5.14 Total: -1.00 -32.19 340.94 -8.02 -40.20 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -4.22 Total: -0.65 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -2.29 Total: -6.19 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: 0.40 Total: -36.45 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.58 Total: -14.93 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.48 Total: -1.90 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.19 -8.02 -40.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273073957.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.075 kcal (2) G-P(sol) polarization free energy of solvation -32.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds