Wall clock time and date at job start Tue Mar 31 2020 10:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46779 * 2 1 4 4 O 1.42894 * 109.47146 * 120.00361 * 2 1 3 5 5 C 1.35971 * 116.99780 * 275.00029 * 4 2 1 6 6 C 1.38685 * 120.03636 * 5.48756 * 5 4 2 7 7 C 1.38163 * 119.98420 * 180.25349 * 6 5 4 8 8 C 1.38465 * 120.04884 * 359.47647 * 7 6 5 9 9 F 1.35097 * 119.96546 * 180.25177 * 8 7 6 10 10 C 1.38435 * 120.07074 * 0.27116 * 8 7 6 11 11 C 1.38265 * 120.01766 * 359.97438 * 10 8 7 12 12 Cl 1.73598 * 120.02948 * 180.02562 * 11 10 8 13 13 C 1.50703 * 109.46964 * 240.00344 * 2 1 3 14 14 O 1.21285 * 119.99533 * 244.99865 * 13 2 1 15 15 N 1.34777 * 120.00123 * 64.99546 * 13 2 1 16 16 C 1.46498 * 120.00015 * 179.97438 * 15 13 2 17 17 C 1.52995 * 109.47048 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.47155 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99827 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00217 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99956 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99950 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47197 * 89.99711 * 22 20 18 24 24 H 1.48497 * 109.46832 * 209.99813 * 22 20 18 25 25 H 1.48504 * 109.47098 * 329.99281 * 22 20 18 26 26 H 1.09004 * 109.47239 * 299.99577 * 1 2 3 27 27 H 1.08994 * 109.47793 * 60.00092 * 1 2 3 28 28 H 1.09010 * 109.46968 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.00831 * 0.02592 * 6 5 4 30 30 H 1.07993 * 119.97221 * 179.74648 * 7 6 5 31 31 H 1.07997 * 119.99670 * 180.02562 * 10 8 7 32 32 H 0.97000 * 119.99845 * 0.02562 * 15 13 2 33 33 H 1.09000 * 109.47165 * 300.00581 * 16 15 13 34 34 H 1.09002 * 109.47099 * 59.99787 * 16 15 13 35 35 H 1.08997 * 109.47230 * 299.99793 * 17 16 15 36 36 H 1.08999 * 109.47178 * 60.00590 * 17 16 15 37 37 H 0.97002 * 119.99978 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.1125 0.0629 2.3047 6 6 1.6594 1.3734 2.3281 7 6 1.7726 2.1226 3.4835 8 6 2.3283 1.5625 4.6213 9 9 2.4335 2.2949 5.7516 10 6 2.7766 0.2529 4.6019 11 6 2.6693 -0.4978 3.4457 12 17 3.2308 -2.1403 3.4212 13 6 2.0323 -0.7104 -1.2305 14 8 2.6530 -1.7467 -1.1215 15 7 1.7918 -0.1941 -2.4521 16 6 2.2806 -0.8844 -3.6482 17 6 1.8762 -0.0939 -4.8942 18 6 2.3784 -0.8043 -6.1247 19 1 2.9312 -1.7271 -6.0277 20 6 2.1332 -0.2757 -7.3743 21 7 1.4605 0.8482 -7.4924 22 14 2.7552 -1.1567 -8.8996 23 1 1.7230 -2.1128 -9.3745 24 1 3.0363 -0.1619 -9.9656 25 1 4.0008 -1.8956 -8.5711 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 1.2214 1.8094 1.4424 30 1 1.4234 3.1443 3.5003 31 1 3.2095 -0.1829 5.4902 32 1 1.2957 0.6349 -2.5391 33 1 3.3669 -0.9622 -3.6044 34 1 1.8464 -1.8831 -3.6943 35 1 0.7899 -0.0158 -4.9382 36 1 2.3107 0.9046 -4.8479 37 1 1.2876 1.2199 -8.3716 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273073957.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:54 Heat of formation + Delta-G solvation = -127.644156 kcal Electronic energy + Delta-G solvation = -22851.171986 eV Core-core repulsion = 18954.302430 eV Total energy + Delta-G solvation = -3896.869557 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.92121 -41.79533 -40.44918 -38.47229 -37.42357 -36.60540 -34.91531 -33.39832 -32.08974 -31.21973 -30.30742 -27.04919 -25.57417 -24.41082 -23.54297 -22.77595 -21.43784 -19.69615 -18.79413 -18.60493 -18.39604 -17.44197 -17.02365 -16.71935 -16.62993 -16.46387 -16.07815 -15.93277 -15.57077 -15.22002 -14.83208 -14.61968 -14.40677 -14.29251 -14.00655 -13.70066 -13.33081 -13.22715 -12.95926 -12.93028 -12.54950 -12.51301 -12.24309 -12.21403 -11.98704 -11.93914 -11.66711 -11.44755 -10.82178 -10.59957 -10.14463 -10.08522 -9.23722 -8.24133 -6.33660 -0.13939 -0.03114 1.01391 1.41998 1.42212 1.48581 1.49555 1.54513 2.29626 2.37940 2.53931 3.11154 3.19050 3.46152 3.54282 3.72620 3.81096 3.85070 3.97044 4.12830 4.44274 4.48607 4.49060 4.64864 4.68213 4.77695 4.85702 4.94031 4.96137 5.14714 5.23692 5.46589 5.49890 5.59834 5.78881 6.06066 6.16756 6.54919 6.79355 7.18257 7.35569 8.87444 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.026426 B = 0.002361 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.327824 B =11855.947732 C =12541.041317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.069 3.931 3 H 0.135 0.865 4 O -0.297 6.297 5 C 0.118 3.882 6 C -0.166 4.166 7 C -0.093 4.093 8 C 0.064 3.936 9 F -0.138 7.138 10 C -0.107 4.107 11 C -0.063 4.063 12 Cl -0.058 7.058 13 C 0.507 3.493 14 O -0.575 6.575 15 N -0.706 5.706 16 C 0.141 3.859 17 C 0.024 3.976 18 C -0.547 4.547 19 H 0.056 0.944 20 C 0.010 3.990 21 N -0.924 5.924 22 Si 0.961 3.039 23 H -0.273 1.273 24 H -0.280 1.280 25 H -0.268 1.268 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.179 0.821 30 H 0.177 0.823 31 H 0.163 0.837 32 H 0.415 0.585 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.013 0.987 36 H 0.013 0.987 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.934 5.796 24.759 25.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.010 3.990 3 H 0.152 0.848 4 O -0.210 6.210 5 C 0.071 3.929 6 C -0.185 4.185 7 C -0.111 4.111 8 C 0.044 3.956 9 F -0.117 7.117 10 C -0.126 4.126 11 C -0.090 4.090 12 Cl -0.029 7.029 13 C 0.293 3.707 14 O -0.454 6.454 15 N -0.359 5.359 16 C 0.018 3.982 17 C -0.014 4.014 18 C -0.586 4.586 19 H 0.074 0.926 20 C -0.189 4.189 21 N -0.564 5.564 22 Si 0.786 3.214 23 H -0.198 1.198 24 H -0.205 1.205 25 H -0.193 1.193 26 H 0.120 0.880 27 H 0.121 0.879 28 H 0.078 0.922 29 H 0.196 0.804 30 H 0.194 0.806 31 H 0.181 0.819 32 H 0.252 0.748 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.032 0.968 36 H 0.031 0.969 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.457 4.843 24.699 25.289 hybrid contribution 0.248 -0.209 -0.872 0.930 sum -2.209 4.634 23.827 24.374 Atomic orbital electron populations 1.22389 0.89959 1.04421 1.06179 1.22436 0.97486 0.97500 0.81544 0.84755 1.86305 1.81001 1.37509 1.16162 1.19016 0.96279 0.91560 0.86003 1.21455 1.04116 0.91617 1.01266 1.21384 0.97327 1.02311 0.90109 1.17455 1.04460 0.89709 0.83962 1.91519 1.94449 1.76518 1.49165 1.20942 1.00958 0.92847 0.97888 1.20046 1.06386 0.88587 0.93999 1.98399 1.87837 1.17953 1.98687 1.20740 0.79512 0.85235 0.85195 1.90721 1.41983 1.25526 1.87132 1.45947 1.56982 1.28083 1.04842 1.21259 0.97719 0.95688 0.83574 1.19129 0.96383 0.95136 0.90706 1.21467 1.35916 1.09046 0.92157 0.92554 1.25802 0.95158 0.95671 1.02290 1.70035 1.40977 1.20519 1.24846 0.85507 0.78928 0.78351 0.78652 1.19828 1.20498 1.19301 0.88026 0.87873 0.92183 0.80399 0.80603 0.81939 0.74778 0.93610 0.93511 0.96818 0.96894 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.55 9.13 71.98 0.66 -1.89 16 2 C 0.07 1.44 2.63 29.85 0.08 1.52 16 3 H 0.14 1.80 6.31 -2.39 -0.02 1.78 16 4 O -0.30 -7.61 8.80 -74.23 -0.65 -8.27 16 5 C 0.12 2.39 6.59 22.51 0.15 2.54 16 6 C -0.17 -2.11 8.24 22.36 0.18 -1.93 16 7 C -0.09 -1.03 10.02 22.31 0.22 -0.81 16 8 C 0.06 0.95 7.30 22.37 0.16 1.11 16 9 F -0.14 -2.20 17.27 44.97 0.78 -1.42 16 10 C -0.11 -1.78 9.80 22.32 0.22 -1.56 16 11 C -0.06 -1.31 6.33 22.41 0.14 -1.17 16 12 Cl -0.06 -1.40 28.50 -2.72 -0.08 -1.48 16 13 C 0.51 16.03 7.18 87.66 0.63 16.66 16 14 O -0.57 -24.34 16.51 15.94 0.26 -24.08 16 15 N -0.71 -21.93 5.52 -463.06 -2.55 -24.49 16 16 C 0.14 5.77 5.61 86.38 0.48 6.26 16 17 C 0.02 1.14 5.09 29.85 0.15 1.29 16 18 C -0.55 -29.77 9.11 25.60 0.23 -29.54 16 19 H 0.06 3.03 7.74 -2.91 -0.02 3.00 16 20 C 0.01 0.54 5.46 84.66 0.46 1.00 16 21 N -0.92 -52.58 13.29 21.45 0.28 -52.29 16 22 Si 0.96 42.84 29.54 68.60 2.03 44.86 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 H 0.10 0.97 6.91 -2.38 -0.02 0.95 16 27 H 0.10 1.17 7.92 -2.39 -0.02 1.15 16 28 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.18 1.20 5.42 -2.91 -0.02 1.18 16 30 H 0.18 0.89 8.06 -2.91 -0.02 0.87 16 31 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 32 H 0.42 10.01 8.26 -92.71 -0.77 9.25 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.97 16 34 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -71.23 340.94 4.19 -67.04 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 0.35 Total: 6.64 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: 3.78 Total: -6.52 kcal Atomic # 7 Polarization: -74.51 SS G_CDS: -2.27 Total: -76.78 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -0.39 Total: -32.34 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.78 Total: -1.42 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.48 kcal Total: -71.23 4.19 -67.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273073957.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.608 kcal (2) G-P(sol) polarization free energy of solvation -71.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds