Wall clock time and date at job start Tue Mar 31 2020 10:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.38357 * 127.14995 * 2 1 4 4 C 1.39779 * 126.56526 * 0.02562 * 3 2 1 5 5 H 1.07997 * 119.99752 * 354.56240 * 4 3 2 6 6 C 1.40081 * 119.99569 * 174.56446 * 4 3 2 7 7 N 1.30810 * 120.00353 * 6.04925 * 6 4 3 8 8 Si 1.86810 * 119.99497 * 186.04816 * 6 4 3 9 9 H 1.48501 * 109.46864 * 94.98295 * 8 6 4 10 10 H 1.48504 * 109.46900 * 214.98156 * 8 6 4 11 11 H 1.48500 * 109.47264 * 334.98168 * 8 6 4 12 12 N 1.33099 * 106.87019 * 180.22409 * 3 2 1 13 13 N 1.28521 * 109.74433 * 359.77589 * 12 3 2 14 14 C 1.32391 * 110.20408 * 0.02562 * 13 12 3 15 15 S 1.76195 * 126.25713 * 179.97438 * 14 13 12 16 16 C 1.80995 * 100.00130 * 0.02562 * 15 14 13 17 17 H 1.08999 * 110.24258 * 53.00332 * 16 15 14 18 18 C 1.53489 * 110.27335 * 174.99885 * 16 15 14 19 19 C 1.50997 * 106.30867 * 119.05596 * 18 16 15 20 20 C 1.38202 * 130.48700 * 179.97438 * 19 18 16 21 21 C 1.38276 * 120.32852 * 180.02562 * 20 19 18 22 22 C 1.38424 * 120.19675 * 0.04587 * 21 20 19 23 23 C 1.37688 * 120.16360 * 0.02562 * 22 21 20 24 24 C 1.39459 * 109.59701 * 0.02562 * 19 18 16 25 25 C 1.47222 * 110.65400 * 0.22216 * 24 19 18 26 26 O 1.21260 * 125.94675 * 179.72534 * 25 24 19 27 27 H 1.08996 * 109.47349 * 270.17513 * 1 2 3 28 28 H 1.09001 * 109.46623 * 30.17622 * 1 2 3 29 29 H 1.08998 * 109.46582 * 150.17344 * 1 2 3 30 30 H 0.97007 * 119.99847 * 179.97438 * 7 6 4 31 31 H 1.08997 * 110.08657 * 359.85140 * 18 16 15 32 32 H 1.08992 * 110.13807 * 238.29550 * 18 16 15 33 33 H 1.08001 * 119.83904 * 0.04180 * 20 19 18 34 34 H 1.08000 * 119.90195 * 180.02562 * 21 20 19 35 35 H 1.08001 * 119.91786 * 179.97438 * 22 21 20 36 36 H 1.07998 * 119.96801 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3006 1.1028 0.0000 4 6 1.9087 2.4445 0.0005 5 1 0.8635 2.7017 -0.0877 6 6 2.8716 3.4553 0.1154 7 7 4.1438 3.1513 0.1030 8 14 2.3388 5.2377 0.2862 9 1 2.2944 5.6054 1.7242 10 1 3.3084 6.1139 -0.4192 11 1 0.9901 5.4106 -0.3108 12 7 3.5491 0.6415 -0.0050 13 7 3.5371 -0.6437 -0.0032 14 6 2.2904 -1.0893 0.0024 15 16 1.7874 -2.7779 0.0060 16 6 3.4059 -3.5880 0.0007 17 1 4.0217 -3.2057 0.8148 18 6 3.2400 -5.1086 0.1284 19 6 3.8391 -5.7070 -1.1218 20 6 3.9551 -7.0256 -1.5188 21 6 4.5512 -7.3416 -2.7258 22 6 5.0377 -6.3381 -3.5459 23 6 4.9309 -5.0196 -3.1637 24 6 4.3257 -4.6886 -1.9410 25 6 4.1026 -3.3721 -1.3209 26 8 4.4210 -2.3007 -1.7911 27 1 -0.3634 0.0031 1.0276 28 1 -0.3632 0.8884 -0.5166 29 1 -0.3632 -0.8915 -0.5111 30 1 4.8106 3.8514 0.1821 31 1 2.1829 -5.3654 0.1968 32 1 3.7708 -5.4714 1.0085 33 1 3.5780 -7.8133 -0.8834 34 1 4.6379 -8.3744 -3.0295 35 1 5.5028 -6.5900 -4.4875 36 1 5.3118 -4.2393 -3.8057 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280048838.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:52 Heat of formation + Delta-G solvation = 70.362775 kcal Electronic energy + Delta-G solvation = -22802.220190 eV Core-core repulsion = 19379.042541 eV Total energy + Delta-G solvation = -3423.177650 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.078 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.44106 -40.39068 -37.84988 -34.98779 -33.63945 -33.24533 -31.12615 -29.46396 -29.09887 -26.51559 -26.01926 -25.39571 -23.03246 -21.39156 -20.74890 -20.36617 -19.81916 -17.31419 -16.62489 -16.54124 -15.99564 -15.86452 -15.41435 -15.04577 -14.64222 -14.27106 -14.04550 -13.93715 -13.33891 -13.29960 -13.08834 -12.99590 -12.30129 -12.23235 -12.20111 -11.83132 -11.79037 -11.29728 -11.25997 -11.14158 -10.88373 -10.43138 -10.33770 -9.71571 -9.54997 -9.40388 -9.05905 -8.87156 -8.59706 -8.41312 -8.29283 -6.86031 -6.60421 -4.52367 0.65388 1.20149 1.75995 2.51595 2.88613 2.95033 3.08716 3.12737 3.42470 3.75811 3.90534 3.93378 4.28143 4.44345 4.52089 4.53766 4.80816 4.85922 5.02740 5.23049 5.24588 5.37785 5.38715 5.55730 5.60645 5.72428 5.80042 5.88031 5.90499 6.05082 6.20546 6.27748 6.32647 6.73696 6.84606 6.94925 7.29542 7.54368 7.87668 7.98186 8.23038 8.75045 8.92161 10.32272 10.73604 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.027859 B = 0.003393 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.834512 B = 8251.055016 C = 8859.466431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.516 5.516 3 C 0.348 3.652 4 C -0.449 4.449 5 H 0.083 0.917 6 C 0.079 3.921 7 N -0.735 5.735 8 Si 0.920 3.080 9 H -0.269 1.269 10 H -0.275 1.275 11 H -0.263 1.263 12 N -0.330 5.330 13 N -0.253 5.253 14 C 0.027 3.973 15 S -0.012 6.012 16 C -0.122 4.122 17 H 0.134 0.866 18 C -0.060 4.060 19 C -0.050 4.050 20 C -0.119 4.119 21 C -0.091 4.091 22 C -0.136 4.136 23 C -0.054 4.054 24 C -0.170 4.170 25 C 0.402 3.598 26 O -0.378 6.378 27 H 0.056 0.944 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.279 0.721 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.286 -17.926 -2.069 18.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.219 5.219 3 C 0.104 3.896 4 C -0.489 4.489 5 H 0.102 0.898 6 C -0.147 4.147 7 N -0.358 5.358 8 Si 0.744 3.256 9 H -0.195 1.195 10 H -0.200 1.200 11 H -0.187 1.187 12 N -0.178 5.178 13 N -0.099 5.099 14 C -0.344 4.344 15 S 0.217 5.783 16 C -0.252 4.252 17 H 0.152 0.848 18 C -0.098 4.098 19 C -0.051 4.051 20 C -0.137 4.137 21 C -0.109 4.109 22 C -0.154 4.154 23 C -0.072 4.072 24 C -0.172 4.172 25 C 0.270 3.730 26 O -0.247 6.247 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.458 -17.759 -2.296 18.075 hybrid contribution -0.558 1.451 0.069 1.556 sum -3.017 -16.309 -2.227 16.734 Atomic orbital electron populations 1.21474 0.78754 1.02529 1.01537 1.46026 1.05912 1.05298 1.64679 1.21642 0.84835 0.88366 0.94805 1.18097 0.95095 0.86516 1.49170 0.89842 1.25796 0.94325 1.01162 0.93418 1.70030 1.00796 1.34859 1.30153 0.86121 0.79465 0.80910 0.79102 1.19457 1.20002 1.18661 1.75491 1.15127 0.98055 1.29163 1.74652 1.14553 1.07210 1.13449 1.25215 0.91851 0.92245 1.25059 1.84319 1.06177 0.92293 1.95524 1.23838 0.99890 0.98433 1.03072 0.84823 1.20593 1.02411 0.90484 0.96287 1.20541 0.95781 0.93224 0.95541 1.20538 1.01287 0.94674 0.97214 1.21259 0.96399 0.99449 0.93795 1.21058 1.01531 0.92431 1.00390 1.21194 0.94964 0.96720 0.94316 1.21217 1.03049 0.96305 0.96607 1.22127 0.76701 0.87599 0.86561 1.90729 1.39131 1.30051 1.64752 0.92542 0.90422 0.91817 0.91024 0.88488 0.87894 0.85479 0.85430 0.85395 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.93 10.89 59.85 0.65 2.58 16 2 N -0.52 -12.95 3.26 -123.17 -0.40 -13.35 16 3 C 0.35 10.07 7.53 -154.80 -1.17 8.90 16 4 C -0.45 -12.24 9.05 -38.32 -0.35 -12.59 16 5 H 0.08 2.06 7.27 -52.49 -0.38 1.68 16 6 C 0.08 2.07 5.49 -17.30 -0.09 1.97 16 7 N -0.73 -20.82 11.96 55.56 0.66 -20.16 16 8 Si 0.92 19.01 29.57 -169.99 -5.03 13.98 16 9 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 10 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 11 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 12 N -0.33 -10.35 10.50 31.26 0.33 -10.02 16 13 N -0.25 -7.23 9.55 30.89 0.30 -6.94 16 14 C 0.03 0.67 7.73 -87.28 -0.67 0.00 16 15 S -0.01 -0.22 20.98 -107.50 -2.26 -2.48 16 16 C -0.12 -2.00 2.92 -27.51 -0.08 -2.08 16 17 H 0.13 2.31 8.14 -51.93 -0.42 1.89 16 18 C -0.06 -0.67 6.48 -27.48 -0.18 -0.85 16 19 C -0.05 -0.59 6.21 -104.04 -0.65 -1.23 16 20 C -0.12 -1.10 10.03 -39.58 -0.40 -1.50 16 21 C -0.09 -0.78 10.04 -39.50 -0.40 -1.18 16 22 C -0.14 -1.34 10.02 -39.71 -0.40 -1.74 16 23 C -0.05 -0.69 10.11 -38.98 -0.39 -1.08 16 24 C -0.17 -2.50 6.11 -104.99 -0.64 -3.15 16 25 C 0.40 7.50 6.96 -30.54 -0.21 7.28 16 26 O -0.38 -9.00 15.66 5.58 0.09 -8.92 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.08 1.38 7.49 -51.93 -0.39 0.99 16 29 H 0.06 1.06 7.84 -51.93 -0.41 0.65 16 30 H 0.28 7.12 8.30 -40.82 -0.34 6.78 16 31 H 0.10 0.96 7.60 -51.93 -0.39 0.56 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.13 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 327.52 15.07 4.94 4.94 Total: -1.00 -36.67 327.52 -10.01 -46.68 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -3.67 Total: 0.92 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -4.97 Total: -4.66 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 0.89 Total: -50.46 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Atomic # 16 Polarization: -0.22 SS G_CDS: -2.26 Total: -2.48 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -36.67 -10.01 -46.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280048838.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.042 kcal (2) G-P(sol) polarization free energy of solvation -36.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds