Wall clock time and date at job start Tue Mar 31 2020 10:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.38357 * 127.14995 * 2 1 4 4 C 1.39779 * 126.56526 * 0.02562 * 3 2 1 5 5 H 1.07997 * 119.99752 * 354.56240 * 4 3 2 6 6 C 1.40081 * 119.99569 * 174.56446 * 4 3 2 7 7 N 1.30810 * 120.00353 * 6.04925 * 6 4 3 8 8 Si 1.86810 * 119.99497 * 186.04816 * 6 4 3 9 9 H 1.48501 * 109.46864 * 94.98295 * 8 6 4 10 10 H 1.48504 * 109.46900 * 214.98156 * 8 6 4 11 11 H 1.48500 * 109.47264 * 334.98168 * 8 6 4 12 12 N 1.33099 * 106.87019 * 180.22409 * 3 2 1 13 13 N 1.28521 * 109.74433 * 359.77589 * 12 3 2 14 14 C 1.32391 * 110.20408 * 0.02562 * 13 12 3 15 15 S 1.76195 * 126.25713 * 179.97438 * 14 13 12 16 16 C 1.80995 * 100.00130 * 0.02562 * 15 14 13 17 17 H 1.08999 * 110.24258 * 53.00332 * 16 15 14 18 18 C 1.53489 * 110.27335 * 174.99885 * 16 15 14 19 19 C 1.50997 * 106.30867 * 119.05596 * 18 16 15 20 20 C 1.38202 * 130.48700 * 179.97438 * 19 18 16 21 21 C 1.38276 * 120.32852 * 180.02562 * 20 19 18 22 22 C 1.38424 * 120.19675 * 0.04587 * 21 20 19 23 23 C 1.37688 * 120.16360 * 0.02562 * 22 21 20 24 24 C 1.39459 * 109.59701 * 0.02562 * 19 18 16 25 25 C 1.47222 * 110.65400 * 0.22216 * 24 19 18 26 26 O 1.21260 * 125.94675 * 179.72534 * 25 24 19 27 27 H 1.08996 * 109.47349 * 270.17513 * 1 2 3 28 28 H 1.09001 * 109.46623 * 30.17622 * 1 2 3 29 29 H 1.08998 * 109.46582 * 150.17344 * 1 2 3 30 30 H 0.97007 * 119.99847 * 179.97438 * 7 6 4 31 31 H 1.08997 * 110.08657 * 359.85140 * 18 16 15 32 32 H 1.08992 * 110.13807 * 238.29550 * 18 16 15 33 33 H 1.08001 * 119.83904 * 0.04180 * 20 19 18 34 34 H 1.08000 * 119.90195 * 180.02562 * 21 20 19 35 35 H 1.08001 * 119.91786 * 179.97438 * 22 21 20 36 36 H 1.07998 * 119.96801 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.3006 1.1028 0.0000 4 6 1.9087 2.4445 0.0005 5 1 0.8635 2.7017 -0.0877 6 6 2.8716 3.4553 0.1154 7 7 4.1438 3.1513 0.1030 8 14 2.3388 5.2377 0.2862 9 1 2.2944 5.6054 1.7242 10 1 3.3084 6.1139 -0.4192 11 1 0.9901 5.4106 -0.3108 12 7 3.5491 0.6415 -0.0050 13 7 3.5371 -0.6437 -0.0032 14 6 2.2904 -1.0893 0.0024 15 16 1.7874 -2.7779 0.0060 16 6 3.4059 -3.5880 0.0007 17 1 4.0217 -3.2057 0.8148 18 6 3.2400 -5.1086 0.1284 19 6 3.8391 -5.7070 -1.1218 20 6 3.9551 -7.0256 -1.5188 21 6 4.5512 -7.3416 -2.7258 22 6 5.0377 -6.3381 -3.5459 23 6 4.9309 -5.0196 -3.1637 24 6 4.3257 -4.6886 -1.9410 25 6 4.1026 -3.3721 -1.3209 26 8 4.4210 -2.3007 -1.7911 27 1 -0.3634 0.0031 1.0276 28 1 -0.3632 0.8884 -0.5166 29 1 -0.3632 -0.8915 -0.5111 30 1 4.8106 3.8514 0.1821 31 1 2.1829 -5.3654 0.1968 32 1 3.7708 -5.4714 1.0085 33 1 3.5780 -7.8133 -0.8834 34 1 4.6379 -8.3744 -3.0295 35 1 5.5028 -6.5900 -4.4875 36 1 5.3118 -4.2393 -3.8057 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280048838.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:51 Heat of formation + Delta-G solvation = 47.211444 kcal Electronic energy + Delta-G solvation = -22803.224108 eV Core-core repulsion = 19379.042541 eV Total energy + Delta-G solvation = -3424.181567 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.078 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.43140 -41.50360 -39.11352 -36.06859 -35.63096 -35.13393 -32.00214 -31.34290 -30.27693 -28.28111 -27.48190 -26.97972 -24.04689 -22.80790 -22.50371 -21.95796 -21.03520 -19.27166 -18.10629 -17.62770 -17.47348 -17.19500 -16.93933 -16.45395 -16.24369 -15.97026 -15.21766 -15.07849 -14.92754 -14.77742 -14.10535 -13.99278 -13.91748 -13.82633 -13.46109 -13.17576 -13.00319 -12.80773 -12.75981 -12.60679 -12.03822 -11.98290 -11.88863 -11.65625 -11.45905 -10.91524 -10.49212 -10.34537 -10.28621 -9.93953 -9.71954 -8.61184 -8.55687 -6.60246 -0.41377 0.33056 0.38705 0.87176 1.19100 1.38616 1.56841 1.60693 1.65584 2.16822 2.47501 2.51423 2.77866 2.82172 3.33398 3.35905 3.50710 3.93804 4.00975 4.03440 4.16957 4.24518 4.41880 4.43693 4.53615 4.57065 4.71604 4.76832 4.89653 4.90559 4.95800 5.06289 5.31026 5.41268 5.43650 5.49335 5.55416 5.96130 6.05695 6.20932 6.53243 6.74084 6.92890 8.40362 8.68020 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.027859 B = 0.003393 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.834512 B = 8251.055016 C = 8859.466431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.524 5.524 3 C 0.317 3.683 4 C -0.474 4.474 5 H 0.104 0.896 6 C 0.026 3.974 7 N -0.790 5.790 8 Si 1.010 2.990 9 H -0.261 1.261 10 H -0.271 1.271 11 H -0.245 1.245 12 N -0.391 5.391 13 N -0.298 5.298 14 C 0.032 3.968 15 S 0.045 5.955 16 C -0.132 4.132 17 H 0.118 0.882 18 C -0.047 4.047 19 C -0.044 4.044 20 C -0.112 4.112 21 C -0.072 4.072 22 C -0.134 4.134 23 C -0.075 4.075 24 C -0.212 4.212 25 C 0.392 3.608 26 O -0.455 6.455 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.284 0.716 31 H 0.121 0.879 32 H 0.137 0.863 33 H 0.169 0.831 34 H 0.171 0.829 35 H 0.155 0.845 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.615 -21.451 -1.782 22.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.226 5.226 3 C 0.070 3.930 4 C -0.514 4.514 5 H 0.122 0.878 6 C -0.194 4.194 7 N -0.415 5.415 8 Si 0.829 3.171 9 H -0.185 1.185 10 H -0.196 1.196 11 H -0.168 1.168 12 N -0.238 5.238 13 N -0.142 5.142 14 C -0.341 4.341 15 S 0.274 5.726 16 C -0.262 4.262 17 H 0.136 0.864 18 C -0.085 4.085 19 C -0.045 4.045 20 C -0.129 4.129 21 C -0.090 4.090 22 C -0.152 4.152 23 C -0.093 4.093 24 C -0.214 4.214 25 C 0.266 3.734 26 O -0.329 6.329 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.139 0.861 32 H 0.155 0.845 33 H 0.186 0.814 34 H 0.189 0.811 35 H 0.172 0.828 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.816 -21.328 -1.999 21.956 hybrid contribution 0.156 2.193 -0.083 2.200 sum -4.660 -19.134 -2.082 19.803 Atomic orbital electron populations 1.21849 0.75325 1.04247 1.03486 1.46391 1.08042 1.04381 1.63831 1.22093 0.85178 0.89981 0.95717 1.18633 0.96410 0.86480 1.49857 0.87838 1.27071 0.93855 1.06597 0.91888 1.70199 1.02627 1.36933 1.31731 0.84799 0.79555 0.73380 0.79402 1.18531 1.19579 1.16834 1.75335 1.17446 0.99541 1.31519 1.74532 1.16820 1.06613 1.16239 1.26473 0.91348 0.95663 1.20601 1.83893 1.07014 0.86913 1.94796 1.24110 0.98490 1.02071 1.01546 0.86436 1.20671 1.04330 0.85895 0.97592 1.20696 0.95257 0.93763 0.94757 1.21009 1.00103 0.94027 0.97772 1.21827 0.93472 1.01033 0.92649 1.21395 1.01020 0.91065 1.01694 1.21297 0.95835 0.98215 0.93985 1.21023 1.06914 0.94808 0.98634 1.22927 0.74968 0.88253 0.87229 1.90696 1.42614 1.32856 1.66730 0.90347 0.89512 0.89334 0.90621 0.86142 0.84467 0.81383 0.81123 0.82782 0.87156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.45 10.89 127.77 1.39 4.85 16 2 N -0.52 -27.07 3.26 -543.61 -1.77 -28.85 16 3 C 0.32 19.31 7.53 133.23 1.00 20.32 16 4 C -0.47 -26.77 9.05 23.09 0.21 -26.56 16 5 H 0.10 5.17 7.27 -2.91 -0.02 5.14 16 6 C 0.03 1.43 5.49 85.29 0.47 1.90 16 7 N -0.79 -47.48 11.96 21.85 0.26 -47.22 16 8 Si 1.01 39.67 29.57 68.60 2.03 41.70 16 9 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 10 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 11 H -0.25 -8.84 7.11 99.48 0.71 -8.13 16 12 N -0.39 -26.37 10.50 -55.01 -0.58 -26.95 16 13 N -0.30 -18.33 9.55 -56.18 -0.54 -18.87 16 14 C 0.03 1.66 7.73 179.18 1.39 3.05 16 15 S 0.05 1.63 20.98 -56.49 -1.19 0.45 16 16 C -0.13 -4.36 2.92 30.09 0.09 -4.28 16 17 H 0.12 4.28 8.14 -2.39 -0.02 4.26 16 18 C -0.05 -0.91 6.48 30.11 0.20 -0.72 16 19 C -0.04 -0.90 6.21 -19.48 -0.12 -1.03 16 20 C -0.11 -1.46 10.03 22.27 0.22 -1.24 16 21 C -0.07 -0.85 10.04 22.32 0.22 -0.63 16 22 C -0.13 -2.26 10.02 22.18 0.22 -2.04 16 23 C -0.07 -1.96 10.11 22.66 0.23 -1.73 16 24 C -0.21 -6.32 6.11 -20.10 -0.12 -6.44 16 25 C 0.39 15.62 6.96 28.13 0.20 15.81 16 26 O -0.45 -23.93 15.66 -2.97 -0.05 -23.98 16 27 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.09 3.02 7.49 -2.39 -0.02 3.01 16 29 H 0.09 2.79 7.84 -2.39 -0.02 2.77 16 30 H 0.28 15.38 8.30 -92.70 -0.77 14.61 16 31 H 0.12 1.83 7.60 -2.39 -0.02 1.81 16 32 H 0.14 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 34 H 0.17 0.67 8.06 -2.91 -0.02 0.65 16 35 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 36 H 0.11 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -91.90 327.52 4.89 -87.02 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 1.12 Total: 15.44 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 5.59 Total: 1.26 kcal Atomic # 7 Polarization: -119.26 SS G_CDS: -2.62 Total: -121.88 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.05 Total: -23.98 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -1.19 Total: 0.45 kcal Total: -91.90 4.89 -87.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280048838.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.228 kcal (2) G-P(sol) polarization free energy of solvation -91.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds