Wall clock time and date at job start Tue Mar 31 2020 11:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 119.99756 * 2 1 4 4 H 1.48495 * 109.47100 * 269.99702 * 3 2 1 5 5 H 1.48495 * 109.47223 * 30.00407 * 3 2 1 6 6 H 1.48504 * 109.46650 * 150.00087 * 3 2 1 7 7 C 1.38946 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99829 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00300 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00363 * 180.02562 * 9 7 2 11 11 O 1.21300 * 119.99671 * 0.02562 * 10 9 7 12 12 C 1.50693 * 120.00264 * 180.02562 * 10 9 7 13 13 H 1.08995 * 115.56374 * 34.31670 * 12 10 9 14 14 C 1.52999 * 117.50064 * 248.62816 * 12 10 9 15 15 C 1.53001 * 117.49880 * 180.02562 * 12 10 9 16 16 H 1.09002 * 117.49822 * 0.02562 * 15 12 10 17 17 C 1.50701 * 117.51956 * 214.97025 * 15 12 10 18 18 C 1.38263 * 119.94313 * 299.85143 * 17 15 12 19 19 C 1.38152 * 120.05240 * 179.72597 * 18 17 15 20 20 C 1.38733 * 119.94285 * 0.51442 * 19 18 17 21 21 O 1.35902 * 120.05287 * 179.72709 * 20 19 18 22 22 C 1.42903 * 117.00205 * 0.02692 * 21 20 19 23 23 F 1.39896 * 109.46746 * 59.99995 * 22 21 20 24 24 F 1.39897 * 109.46960 * 179.97438 * 22 21 20 25 25 F 1.39902 * 109.47037 * 299.99966 * 22 21 20 26 26 C 1.38731 * 119.89047 * 359.75803 * 20 19 18 27 27 C 1.38140 * 119.94261 * 359.97438 * 26 20 19 28 28 H 0.97004 * 120.00476 * 0.02562 * 1 2 3 29 29 H 0.97005 * 120.00267 * 0.02562 * 9 7 2 30 30 H 1.09004 * 117.50150 * 145.02538 * 14 12 10 31 31 H 1.09004 * 117.51638 * 359.97438 * 14 12 10 32 32 H 1.07998 * 119.97379 * 359.97304 * 18 17 15 33 33 H 1.08000 * 120.02453 * 180.24898 * 19 18 17 34 34 H 1.07993 * 120.02812 * 180.02562 * 26 20 19 35 35 H 1.08004 * 119.97306 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4455 2.6526 0.7001 6 1 3.5456 1.4401 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 1 0.3055 -4.8641 -0.5558 14 6 1.3183 -5.7223 1.2625 15 6 2.0659 -6.1533 -0.0005 16 1 3.1517 -6.0582 0.0008 17 6 1.5169 -7.3290 -0.7669 18 6 0.2881 -7.8627 -0.4251 19 6 -0.2198 -8.9370 -1.1298 20 6 0.5091 -9.4869 -2.1744 21 8 0.0140 -10.5472 -2.8655 22 6 -1.2637 -11.0446 -2.4630 23 9 -2.2202 -10.0319 -2.5923 24 9 -1.6192 -12.1275 -3.2742 25 9 -1.2028 -11.4610 -1.1288 26 6 1.7443 -8.9531 -2.5117 27 6 2.2453 -7.8754 -1.8075 28 1 -0.4851 0.8400 -0.0004 29 1 0.3533 -2.3907 -0.0005 30 1 0.4291 -6.2889 1.5391 31 1 1.9127 -5.3442 2.0943 32 1 -0.2769 -7.4370 0.3909 33 1 -1.1815 -9.3509 -0.8650 34 1 2.3134 -9.3791 -3.3247 35 1 3.2067 -7.4592 -2.0700 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281562620.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:01 Heat of formation + Delta-G solvation = -183.950004 kcal Electronic energy + Delta-G solvation = -25011.095673 eV Core-core repulsion = 20559.987831 eV Total energy + Delta-G solvation = -4451.107842 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.74079 -48.47163 -48.32700 -40.56409 -39.12577 -37.84390 -35.66528 -33.88075 -31.30393 -31.24757 -30.20962 -26.41154 -25.58179 -23.90823 -23.19938 -22.61094 -20.75820 -19.84960 -19.44874 -19.30780 -18.96906 -17.86042 -17.23204 -16.45319 -15.75772 -15.50904 -15.30351 -15.09295 -14.82318 -14.79515 -14.73187 -14.67375 -14.43699 -14.41128 -13.99719 -13.65045 -13.52979 -13.45492 -13.07040 -12.58373 -12.47228 -11.71687 -11.61975 -11.43954 -11.15304 -11.07978 -10.46146 -10.38638 -10.21879 -10.11128 -9.54488 -9.25946 -8.57203 -8.32184 -8.02188 -6.46497 -3.87169 0.98816 1.09680 1.20789 2.54971 3.12176 3.23920 3.29233 3.30357 3.47934 3.63928 3.74110 4.11994 4.34922 4.44392 4.51960 4.56622 4.89636 5.00741 5.12744 5.14969 5.21512 5.30316 5.44675 5.58504 5.74416 5.81611 5.92815 6.02307 6.20972 6.21585 6.32662 6.42948 6.60214 6.73677 7.50612 8.01017 8.55451 9.12218 9.49851 10.00920 10.70903 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.028352 B = 0.002391 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.333250 B =11707.133203 C =12053.241653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.302 4.302 8 H 0.104 0.896 9 N -0.553 5.553 10 C 0.465 3.535 11 O -0.596 6.596 12 C -0.150 4.150 13 H 0.112 0.888 14 C -0.153 4.153 15 C -0.097 4.097 16 H 0.128 0.872 17 C -0.053 4.053 18 C -0.082 4.082 19 C -0.185 4.185 20 C 0.088 3.912 21 O -0.312 6.312 22 C 0.603 3.397 23 F -0.165 7.165 24 F -0.134 7.134 25 F -0.166 7.166 26 C -0.119 4.119 27 C -0.075 4.075 28 H 0.273 0.727 29 H 0.394 0.606 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.136 0.864 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.294 -21.529 -3.206 22.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.431 4.431 8 H 0.122 0.878 9 N -0.187 5.187 10 C 0.251 3.749 11 O -0.483 6.483 12 C -0.172 4.172 13 H 0.130 0.870 14 C -0.190 4.190 15 C -0.115 4.115 16 H 0.145 0.855 17 C -0.053 4.053 18 C -0.100 4.100 19 C -0.204 4.204 20 C 0.047 3.953 21 O -0.232 6.232 22 C 0.513 3.487 23 F -0.147 7.147 24 F -0.116 7.116 25 F -0.148 7.148 26 C -0.137 4.137 27 C -0.093 4.093 28 H 0.083 0.917 29 H 0.228 0.772 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.156 0.844 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.588 -21.440 -3.344 21.994 hybrid contribution -0.719 0.727 0.013 1.022 sum -4.307 -20.714 -3.331 21.417 Atomic orbital electron populations 1.69615 1.05978 1.28315 1.49998 1.25291 0.95646 0.99818 0.97091 0.85843 0.79245 0.80670 0.78462 1.20319 1.20853 1.19356 1.19734 0.93415 0.82193 1.47799 0.87840 1.41815 1.09330 1.04447 1.63148 1.18927 0.87533 0.83876 0.84547 1.90510 1.13777 1.87100 1.56872 1.22319 1.00963 0.91229 1.02653 0.86995 1.23058 1.02298 1.02034 0.91647 1.20996 0.99633 0.91486 0.99416 0.85463 1.19351 0.94207 0.95872 0.95872 1.20927 0.95298 0.94694 0.99056 1.21448 1.01056 1.00277 0.97588 1.18683 0.95046 0.87778 0.93823 1.86396 1.31347 1.47755 1.57694 1.19357 0.78849 0.76017 0.74523 1.93311 1.65383 1.60560 1.95424 1.93299 1.90779 1.54026 1.73476 1.93301 1.95890 1.90467 1.35144 1.20387 0.93255 0.97823 1.02256 1.20926 1.00279 0.94132 0.93951 0.91747 0.77247 0.88337 0.87880 0.84640 0.85066 0.84428 0.84121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.25 13.05 55.50 0.72 -23.53 16 2 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 3 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.30 -8.36 9.68 -14.94 -0.14 -8.50 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 9 N -0.55 -14.00 5.29 -10.97 -0.06 -14.05 16 10 C 0.47 10.90 7.57 -10.99 -0.08 10.82 16 11 O -0.60 -15.96 15.83 5.54 0.09 -15.87 16 12 C -0.15 -2.61 5.83 -91.77 -0.53 -3.15 16 13 H 0.11 1.78 8.14 -51.93 -0.42 1.36 16 14 C -0.15 -2.19 9.56 -26.75 -0.26 -2.44 16 15 C -0.10 -1.44 5.55 -91.79 -0.51 -1.95 16 16 H 0.13 2.07 7.67 -51.93 -0.40 1.67 16 17 C -0.05 -0.67 5.61 -104.60 -0.59 -1.26 16 18 C -0.08 -0.95 9.29 -39.60 -0.37 -1.31 16 19 C -0.19 -2.07 8.26 -39.43 -0.33 -2.39 16 20 C 0.09 1.00 6.48 -39.22 -0.25 0.75 16 21 O -0.31 -3.35 10.37 -19.43 -0.20 -3.55 16 22 C 0.60 5.73 3.42 101.05 0.35 6.07 16 23 F -0.16 -1.62 15.56 2.25 0.04 -1.58 16 24 F -0.13 -1.20 17.53 2.25 0.04 -1.16 16 25 F -0.17 -1.56 15.56 2.25 0.04 -1.52 16 26 C -0.12 -1.27 9.99 -39.44 -0.39 -1.67 16 27 C -0.07 -0.87 9.73 -39.61 -0.39 -1.25 16 28 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 30 H 0.10 1.12 6.17 -51.93 -0.32 0.80 16 31 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 32 H 0.14 1.36 6.01 -52.49 -0.32 1.05 16 33 H 0.13 1.30 5.10 -52.49 -0.27 1.04 16 34 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.14 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 321.25 15.07 4.84 4.84 Total: -1.00 -30.25 321.25 -5.94 -36.19 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -2.83 Total: 10.22 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -3.59 Total: -5.76 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.67 Total: -37.58 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.11 Total: -19.42 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.11 Total: -4.26 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.25 -5.94 -36.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281562620.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.763 kcal (2) G-P(sol) polarization free energy of solvation -30.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds