Wall clock time and date at job start Tue Mar 31 2020 11:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 119.99756 * 2 1 4 4 H 1.48495 * 109.47100 * 269.99702 * 3 2 1 5 5 H 1.48495 * 109.47223 * 30.00407 * 3 2 1 6 6 H 1.48504 * 109.46650 * 150.00087 * 3 2 1 7 7 C 1.38946 * 119.99845 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99829 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00300 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00363 * 180.02562 * 9 7 2 11 11 O 1.21300 * 119.99671 * 0.02562 * 10 9 7 12 12 C 1.50693 * 120.00264 * 180.02562 * 10 9 7 13 13 H 1.08995 * 115.56374 * 34.31670 * 12 10 9 14 14 C 1.52999 * 117.50064 * 248.62816 * 12 10 9 15 15 C 1.53001 * 117.49880 * 180.02562 * 12 10 9 16 16 H 1.09002 * 117.49822 * 0.02562 * 15 12 10 17 17 C 1.50701 * 117.51956 * 214.97025 * 15 12 10 18 18 C 1.38263 * 119.94313 * 299.85143 * 17 15 12 19 19 C 1.38152 * 120.05240 * 179.72597 * 18 17 15 20 20 C 1.38733 * 119.94285 * 0.51442 * 19 18 17 21 21 O 1.35902 * 120.05287 * 179.72709 * 20 19 18 22 22 C 1.42903 * 117.00205 * 0.02692 * 21 20 19 23 23 F 1.39896 * 109.46746 * 59.99995 * 22 21 20 24 24 F 1.39897 * 109.46960 * 179.97438 * 22 21 20 25 25 F 1.39902 * 109.47037 * 299.99966 * 22 21 20 26 26 C 1.38731 * 119.89047 * 359.75803 * 20 19 18 27 27 C 1.38140 * 119.94261 * 359.97438 * 26 20 19 28 28 H 0.97004 * 120.00476 * 0.02562 * 1 2 3 29 29 H 0.97005 * 120.00267 * 0.02562 * 9 7 2 30 30 H 1.09004 * 117.50150 * 145.02538 * 14 12 10 31 31 H 1.09004 * 117.51638 * 359.97438 * 14 12 10 32 32 H 1.07998 * 119.97379 * 359.97304 * 18 17 15 33 33 H 1.08000 * 120.02453 * 180.24898 * 19 18 17 34 34 H 1.07993 * 120.02812 * 180.02562 * 26 20 19 35 35 H 1.08004 * 119.97306 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4956 2.0464 -1.4000 5 1 1.4455 2.6526 0.7001 6 1 3.5456 1.4401 0.7001 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8629 -0.0011 13 1 0.3055 -4.8641 -0.5558 14 6 1.3183 -5.7223 1.2625 15 6 2.0659 -6.1533 -0.0005 16 1 3.1517 -6.0582 0.0008 17 6 1.5169 -7.3290 -0.7669 18 6 0.2881 -7.8627 -0.4251 19 6 -0.2198 -8.9370 -1.1298 20 6 0.5091 -9.4869 -2.1744 21 8 0.0140 -10.5472 -2.8655 22 6 -1.2637 -11.0446 -2.4630 23 9 -2.2202 -10.0319 -2.5923 24 9 -1.6192 -12.1275 -3.2742 25 9 -1.2028 -11.4610 -1.1288 26 6 1.7443 -8.9531 -2.5117 27 6 2.2453 -7.8754 -1.8075 28 1 -0.4851 0.8400 -0.0004 29 1 0.3533 -2.3907 -0.0005 30 1 0.4291 -6.2889 1.5391 31 1 1.9127 -5.3442 2.0943 32 1 -0.2769 -7.4370 0.3909 33 1 -1.1815 -9.3509 -0.8650 34 1 2.3134 -9.3791 -3.3247 35 1 3.2067 -7.4592 -2.0700 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281562620.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:01 Heat of formation + Delta-G solvation = -201.814930 kcal Electronic energy + Delta-G solvation = -25011.870354 eV Core-core repulsion = 20559.987831 eV Total energy + Delta-G solvation = -4451.882523 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.48234 -49.20019 -49.07440 -41.47775 -40.54873 -39.11892 -36.98800 -35.85823 -33.26744 -32.15995 -31.17628 -27.68345 -27.02031 -24.87848 -24.57830 -23.70051 -21.80167 -20.77025 -20.65009 -20.19670 -20.07881 -19.80736 -18.35532 -17.67632 -16.81683 -16.76117 -16.28864 -16.16881 -15.95142 -15.79075 -15.74965 -15.54583 -15.48016 -15.23568 -15.18569 -15.16780 -14.95925 -14.35292 -14.24796 -13.78979 -13.57333 -13.43357 -13.05114 -12.95164 -12.49417 -12.44508 -12.13799 -12.05310 -11.61140 -11.46658 -11.33856 -10.41847 -10.10644 -10.05193 -9.35818 -8.49154 -5.98459 0.07397 0.24702 0.43204 1.36040 1.41273 1.54176 1.78255 1.88503 2.27621 2.44299 2.73179 2.92876 3.00974 3.10051 3.28580 3.60448 3.69995 3.74343 3.86894 4.00314 4.16146 4.28127 4.29884 4.48125 4.52565 4.72816 4.90699 4.99356 5.06723 5.11652 5.25947 5.36510 5.38843 5.60114 5.87190 5.97112 6.55475 7.08502 7.52947 8.07538 8.68109 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.028352 B = 0.002391 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.333250 B =11707.133203 C =12053.241653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.012 4.012 3 Si 0.994 3.006 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.272 1.272 7 C -0.337 4.337 8 H 0.080 0.920 9 N -0.565 5.565 10 C 0.464 3.536 11 O -0.636 6.636 12 C -0.170 4.170 13 H 0.130 0.870 14 C -0.131 4.131 15 C -0.082 4.082 16 H 0.108 0.892 17 C -0.068 4.068 18 C -0.079 4.079 19 C -0.189 4.189 20 C 0.084 3.916 21 O -0.316 6.316 22 C 0.607 3.393 23 F -0.166 7.166 24 F -0.130 7.130 25 F -0.164 7.164 26 C -0.119 4.119 27 C -0.079 4.079 28 H 0.279 0.721 29 H 0.397 0.603 30 H 0.138 0.862 31 H 0.092 0.908 32 H 0.153 0.847 33 H 0.143 0.857 34 H 0.158 0.842 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.238 -22.541 -3.239 23.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.467 4.467 8 H 0.098 0.902 9 N -0.200 5.200 10 C 0.252 3.748 11 O -0.525 6.525 12 C -0.191 4.191 13 H 0.148 0.852 14 C -0.168 4.168 15 C -0.101 4.101 16 H 0.126 0.874 17 C -0.068 4.068 18 C -0.097 4.097 19 C -0.208 4.208 20 C 0.042 3.958 21 O -0.236 6.236 22 C 0.517 3.483 23 F -0.148 7.148 24 F -0.112 7.112 25 F -0.146 7.146 26 C -0.137 4.137 27 C -0.097 4.097 28 H 0.088 0.912 29 H 0.231 0.769 30 H 0.155 0.845 31 H 0.111 0.889 32 H 0.170 0.830 33 H 0.161 0.839 34 H 0.175 0.825 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.557 -22.471 -3.378 23.176 hybrid contribution -0.419 0.922 -0.005 1.013 sum -4.976 -21.548 -3.383 22.373 Atomic orbital electron populations 1.69675 1.06896 1.29456 1.49843 1.26080 0.96559 1.02512 0.96028 0.84913 0.77921 0.76703 0.78727 1.19569 1.19405 1.19652 1.19704 0.92757 0.83982 1.50230 0.90212 1.41896 1.09400 1.04628 1.64061 1.19934 0.87412 0.85349 0.82106 1.90472 1.15866 1.88076 1.58077 1.22159 1.01718 0.88971 1.06285 0.85188 1.23210 1.03294 1.00041 0.90296 1.20886 0.98505 0.90750 0.99910 0.87400 1.19232 0.95240 0.95723 0.96651 1.21071 0.94735 0.94532 0.99362 1.21607 1.01541 1.00155 0.97447 1.18875 0.95275 0.87815 0.93823 1.86387 1.31896 1.47577 1.57760 1.19272 0.78448 0.76002 0.74603 1.93311 1.65346 1.60665 1.95439 1.93311 1.90679 1.53795 1.73396 1.93307 1.95852 1.90425 1.34990 1.20583 0.93283 0.97359 1.02499 1.21071 1.00575 0.94340 0.93721 0.91163 0.76886 0.84455 0.88941 0.82968 0.83899 0.82469 0.83532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.53 13.05 21.66 0.28 -49.24 16 2 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 3 Si 0.99 42.67 29.55 68.60 2.03 44.70 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.34 -19.23 9.68 84.04 0.81 -18.42 16 8 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 9 N -0.57 -29.36 5.29 -306.99 -1.62 -30.99 16 10 C 0.46 22.27 7.57 87.65 0.66 22.94 16 11 O -0.64 -35.32 15.83 -3.09 -0.05 -35.37 16 12 C -0.17 -5.83 5.83 -11.54 -0.07 -5.89 16 13 H 0.13 3.97 8.14 -2.39 -0.02 3.95 16 14 C -0.13 -3.53 9.56 30.58 0.29 -3.24 16 15 C -0.08 -2.37 5.55 -11.55 -0.06 -2.44 16 16 H 0.11 3.56 7.67 -2.39 -0.02 3.54 16 17 C -0.07 -1.62 5.61 -19.85 -0.11 -1.73 16 18 C -0.08 -1.62 9.29 22.26 0.21 -1.41 16 19 C -0.19 -3.74 8.26 22.37 0.18 -3.55 16 20 C 0.08 1.72 6.48 22.51 0.15 1.87 16 21 O -0.32 -6.13 10.37 -92.45 -0.96 -7.09 16 22 C 0.61 10.30 3.42 113.37 0.39 10.69 16 23 F -0.17 -2.91 15.56 44.97 0.70 -2.21 16 24 F -0.13 -2.09 17.53 44.97 0.79 -1.30 16 25 F -0.16 -2.71 15.56 44.97 0.70 -2.01 16 26 C -0.12 -2.31 9.99 22.36 0.22 -2.09 16 27 C -0.08 -1.72 9.73 22.25 0.22 -1.50 16 28 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 29 H 0.40 19.67 7.90 -92.70 -0.73 18.94 16 30 H 0.14 2.62 6.17 -2.39 -0.01 2.60 16 31 H 0.09 2.71 8.14 -2.38 -0.02 2.70 16 32 H 0.15 2.50 6.01 -2.91 -0.02 2.49 16 33 H 0.14 2.45 5.10 -2.91 -0.01 2.43 16 34 H 0.16 2.35 8.06 -2.91 -0.02 2.32 16 35 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -65.93 321.25 5.67 -60.25 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: 0.45 Total: 28.19 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 3.36 Total: -4.94 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -1.34 Total: -80.23 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -1.01 Total: -42.45 kcal Atomic # 9 Polarization: -7.71 SS G_CDS: 2.19 Total: -5.53 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -65.93 5.67 -60.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281562620.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.560 kcal (2) G-P(sol) polarization free energy of solvation -65.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds