Wall clock time and date at job start Tue Mar 31 2020 10:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46723 * 2 1 4 4 C 1.50701 * 109.47289 * 239.99778 * 2 1 3 5 5 H 1.07997 * 119.99915 * 239.99516 * 4 2 1 6 6 C 1.37874 * 120.00113 * 60.00151 * 4 2 1 7 7 N 1.31523 * 119.99761 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00225 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46735 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47047 * 119.99458 * 8 6 4 11 11 H 1.48499 * 109.46805 * 239.99840 * 8 6 4 12 12 N 1.46500 * 109.47099 * 119.99377 * 2 1 3 13 13 C 1.46499 * 120.00118 * 60.00427 * 12 2 1 14 14 C 1.34775 * 120.00179 * 239.99918 * 12 2 1 15 15 O 1.21280 * 120.00029 * 5.72620 * 14 12 2 16 16 C 1.50706 * 119.99956 * 185.71950 * 14 12 2 17 17 H 1.08991 * 109.47084 * 344.01973 * 16 14 12 18 18 O 1.42903 * 109.46925 * 224.01748 * 16 14 12 19 19 C 1.50703 * 109.46911 * 104.02224 * 16 14 12 20 20 C 1.38225 * 120.00046 * 93.14353 * 19 16 14 21 21 C 1.38204 * 120.03302 * 179.72155 * 20 19 16 22 22 C 1.38382 * 120.04047 * 0.55217 * 21 20 19 23 23 Cl 1.73609 * 120.00250 * 179.74289 * 22 21 20 24 24 C 1.38293 * 119.99887 * 359.72941 * 22 21 20 25 25 C 1.38448 * 119.99511 * 273.41765 * 19 16 14 26 26 F 1.35098 * 120.02299 * 359.97438 * 25 19 16 27 27 H 1.09002 * 109.46959 * 60.00501 * 1 2 3 28 28 H 1.08997 * 109.46874 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47010 * 300.00094 * 1 2 3 30 30 H 0.96998 * 119.99299 * 179.97438 * 7 6 4 31 31 H 1.08997 * 109.47253 * 265.63584 * 13 12 2 32 32 H 1.09009 * 109.46996 * 25.62608 * 13 12 2 33 33 H 1.08993 * 109.47878 * 145.62627 * 13 12 2 34 34 H 0.96696 * 113.99988 * 300.00071 * 18 16 14 35 35 H 1.07996 * 119.98254 * 0.02562 * 20 19 16 36 36 H 1.07999 * 119.97754 * 180.27434 * 21 20 19 37 37 H 1.07998 * 120.01994 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6994 -0.2395 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 3.1466 -2.2871 -3.6036 10 1 1.1662 -1.5869 -4.8159 11 1 3.1467 -0.1875 -4.8164 12 7 2.0184 -0.6905 1.1962 13 6 1.6645 -2.0930 1.4282 14 6 2.7932 -0.0354 2.0833 15 8 3.0010 1.1516 1.9467 16 6 3.4014 -0.7780 3.2452 17 1 2.8940 -1.7344 3.3708 18 8 3.2554 -0.0013 4.4358 19 6 4.8651 -1.0171 2.9778 20 6 5.8078 -0.1173 3.4384 21 6 7.1507 -0.3388 3.1985 22 6 7.5523 -1.4557 2.4871 23 17 9.2390 -1.7296 2.1805 24 6 6.6100 -2.3539 2.0204 25 6 5.2650 -2.1350 2.2658 26 9 4.3436 -3.0121 1.8110 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.7089 1.1611 -3.4845 31 1 0.7811 -2.1445 2.0646 32 1 1.4538 -2.5771 0.4745 33 1 2.4952 -2.6012 1.9178 34 1 3.6833 0.8649 4.3953 35 1 5.4952 0.7568 3.9904 36 1 7.8869 0.3625 3.5627 37 1 6.9230 -3.2260 1.4655 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291542010.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:21 Heat of formation + Delta-G solvation = -102.107150 kcal Electronic energy + Delta-G solvation = -24756.141093 eV Core-core repulsion = 20860.378904 eV Total energy + Delta-G solvation = -3895.762189 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.16436 -40.18712 -38.83365 -36.96359 -36.28290 -35.27996 -32.97210 -31.60899 -30.96149 -29.61446 -26.77715 -26.15793 -25.24323 -23.16971 -22.58130 -21.02813 -18.93207 -18.42608 -17.38673 -17.09750 -16.65271 -16.22627 -15.81330 -15.77705 -15.28875 -14.74700 -14.36010 -14.27504 -14.03127 -13.65329 -13.44168 -13.32303 -12.85136 -12.60577 -12.33397 -11.95730 -11.80051 -11.60622 -11.50496 -11.29878 -11.24507 -11.08106 -10.87275 -10.83072 -10.74168 -10.27256 -10.21028 -9.35883 -9.20479 -9.12302 -8.60289 -8.44788 -7.67973 -6.11104 -4.19246 0.68584 0.88428 1.76799 2.96304 3.23095 3.24203 3.31725 3.34873 3.75005 4.00722 4.28874 4.36167 4.42158 4.52632 4.69227 4.85545 4.97205 5.20456 5.25520 5.27994 5.58141 5.66860 5.80694 5.86189 5.97666 5.99867 6.37405 6.46272 6.72212 6.79941 7.02384 7.32114 7.39180 7.46710 7.67277 7.96391 8.13826 8.41446 8.71191 8.90255 9.47196 10.94283 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.013049 B = 0.004850 C = 0.004005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.254325 B = 5771.375712 C = 6989.683550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 N -0.578 5.578 13 C 0.063 3.937 14 C 0.484 3.516 15 O -0.546 6.546 16 C 0.128 3.872 17 H 0.130 0.870 18 O -0.534 6.534 19 C -0.136 4.136 20 C -0.058 4.058 21 C -0.117 4.117 22 C -0.007 4.007 23 Cl -0.060 7.060 24 C -0.144 4.144 25 C 0.130 3.870 26 F -0.118 7.118 27 H 0.094 0.906 28 H 0.030 0.970 29 H 0.012 0.988 30 H 0.263 0.737 31 H 0.045 0.955 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.383 0.617 35 H 0.145 0.855 36 H 0.143 0.857 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.634 -6.306 12.452 17.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.564 4.564 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.209 1.209 12 N -0.309 5.309 13 C -0.080 4.080 14 C 0.269 3.731 15 O -0.425 6.425 16 C 0.065 3.935 17 H 0.148 0.852 18 O -0.340 6.340 19 C -0.138 4.138 20 C -0.076 4.076 21 C -0.136 4.136 22 C -0.034 4.034 23 Cl -0.031 7.031 24 C -0.164 4.164 25 C 0.110 3.890 26 F -0.097 7.097 27 H 0.112 0.888 28 H 0.049 0.951 29 H 0.031 0.969 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.233 0.767 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 10.411 -6.146 12.361 17.291 hybrid contribution 0.553 -0.311 -1.358 1.498 sum 10.964 -6.457 11.003 16.822 Atomic orbital electron populations 1.22076 0.97971 0.99518 1.00896 1.19015 0.91150 0.94436 0.79705 0.91957 1.21338 1.31877 1.13071 0.90157 0.92109 1.24887 0.94894 0.94965 0.98957 1.69895 1.36277 1.22596 1.23701 0.86451 0.78660 0.79642 0.82748 1.19746 1.20840 1.20896 1.48256 1.47820 1.11809 1.23051 1.22005 0.99702 0.83170 1.03146 1.20798 0.80270 0.88033 0.83989 1.90653 1.61927 1.15084 1.74857 1.20834 0.90486 0.96477 0.85668 0.85236 1.86608 1.79721 1.33218 1.34476 1.20386 0.97151 0.95270 1.00990 1.20710 0.91296 0.97947 0.97690 1.21049 0.96431 0.96755 0.99379 1.20600 0.85467 0.96673 1.00626 1.98384 1.13885 1.96166 1.94626 1.20927 0.90465 1.01705 1.03269 1.17174 0.86016 0.88658 0.97160 1.91462 1.64254 1.67222 1.86734 0.88757 0.95062 0.96919 0.92696 0.93618 0.89507 0.91439 0.76735 0.83771 0.83920 0.83324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.97 37.16 0.33 -3.18 16 2 C 0.26 6.55 2.63 -69.08 -0.18 6.37 16 3 H 0.06 1.84 6.92 -51.93 -0.36 1.48 16 4 C -0.53 -14.11 7.96 -34.44 -0.27 -14.38 16 5 H 0.06 1.62 7.41 -52.49 -0.39 1.23 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.95 11.32 55.43 0.63 -24.32 16 8 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 9 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.58 -12.36 2.75 -175.26 -0.48 -12.84 16 13 C 0.06 1.09 8.85 59.85 0.53 1.62 16 14 C 0.48 9.89 6.73 -10.98 -0.07 9.82 16 15 O -0.55 -12.88 16.02 -8.92 -0.14 -13.03 16 16 C 0.13 1.99 3.05 -29.03 -0.09 1.90 16 17 H 0.13 1.85 5.56 -51.93 -0.29 1.56 16 18 O -0.53 -7.61 12.98 -49.71 -0.65 -8.25 16 19 C -0.14 -1.93 5.04 -104.55 -0.53 -2.46 16 20 C -0.06 -0.69 9.31 -39.60 -0.37 -1.06 16 21 C -0.12 -1.26 9.83 -39.54 -0.39 -1.65 16 22 C -0.01 -0.08 6.32 -39.51 -0.25 -0.33 16 23 Cl -0.06 -0.61 28.96 -51.86 -1.50 -2.11 16 24 C -0.14 -1.78 9.81 -39.48 -0.39 -2.17 16 25 C 0.13 1.83 7.24 -39.42 -0.29 1.54 16 26 F -0.12 -1.74 13.77 2.25 0.03 -1.71 16 27 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 28 H 0.03 0.69 7.67 -51.93 -0.40 0.29 16 29 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.09 1.59 7.09 -51.92 -0.37 1.22 16 33 H 0.07 1.01 3.12 -51.93 -0.16 0.85 16 34 H 0.38 4.56 6.99 45.56 0.32 4.87 16 35 H 0.14 1.40 6.43 -52.49 -0.34 1.06 16 36 H 0.14 1.17 8.06 -52.49 -0.42 0.74 16 37 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 325.65 15.07 4.91 4.91 Total: -1.00 -31.09 325.65 -7.41 -38.50 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -3.12 Total: 5.20 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -2.06 Total: -2.30 kcal Atomic # 7 Polarization: -37.31 SS G_CDS: 0.15 Total: -37.16 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.79 Total: -21.28 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.03 Total: -1.71 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.09 -7.41 -38.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291542010.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.610 kcal (2) G-P(sol) polarization free energy of solvation -31.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds