Wall clock time and date at job start Tue Mar 31 2020 10:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47471 * 2 1 4 4 C 1.50702 * 109.47039 * 120.00865 * 2 1 3 5 5 H 1.08003 * 119.99712 * 119.99992 * 4 2 1 6 6 C 1.37870 * 119.99722 * 299.99109 * 4 2 1 7 7 N 1.31518 * 120.00312 * 0.02562 * 6 4 2 8 8 Si 1.86810 * 119.99953 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46699 * 90.00575 * 8 6 4 10 10 H 1.48496 * 109.47149 * 210.00479 * 8 6 4 11 11 H 1.48498 * 109.46733 * 330.00322 * 8 6 4 12 12 N 1.46499 * 109.46841 * 240.00430 * 2 1 3 13 13 C 1.46507 * 120.00199 * 300.00359 * 12 2 1 14 14 C 1.34776 * 120.00208 * 120.27454 * 12 2 1 15 15 O 1.21281 * 119.99651 * 5.75406 * 14 12 2 16 16 C 1.50696 * 120.00462 * 185.74885 * 14 12 2 17 17 H 1.09000 * 109.47123 * 334.20715 * 16 14 12 18 18 O 1.42896 * 109.47472 * 214.20072 * 16 14 12 19 19 C 1.50701 * 109.47272 * 94.19958 * 16 14 12 20 20 C 1.38226 * 119.99818 * 92.06915 * 19 16 14 21 21 C 1.38204 * 120.03920 * 179.72979 * 20 19 16 22 22 C 1.38386 * 120.03731 * 0.54674 * 21 20 19 23 23 Cl 1.73594 * 120.00254 * 179.74961 * 22 21 20 24 24 C 1.38288 * 119.99792 * 359.72567 * 22 21 20 25 25 C 1.38448 * 120.00224 * 272.34722 * 19 16 14 26 26 F 1.35098 * 120.01735 * 359.96839 * 25 19 16 27 27 H 1.09001 * 109.46981 * 299.99489 * 1 2 3 28 28 H 1.08996 * 109.47083 * 59.99204 * 1 2 3 29 29 H 1.09002 * 109.47074 * 179.97438 * 1 2 3 30 30 H 0.97002 * 119.99997 * 179.97438 * 7 6 4 31 31 H 1.08994 * 109.47178 * 84.09429 * 13 12 2 32 32 H 1.08997 * 109.47006 * 204.09824 * 13 12 2 33 33 H 1.09000 * 109.46491 * 324.09308 * 13 12 2 34 34 H 0.96696 * 114.00120 * 300.00416 * 18 16 14 35 35 H 1.08008 * 119.97933 * 359.97438 * 20 19 16 36 36 H 1.08001 * 119.98168 * 180.27273 * 21 20 19 37 37 H 1.08000 * 120.02036 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6533 -1.5887 1.1311 6 6 1.6994 -0.2396 2.4826 7 7 0.9430 0.8295 2.6034 8 14 2.3226 -1.1200 4.0078 9 1 3.6306 -0.5445 4.4117 10 1 1.3446 -0.9495 5.1121 11 1 2.4880 -2.5658 3.7119 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0931 -1.4283 14 6 2.7977 -0.0372 -2.0806 15 8 3.1808 1.0873 -1.8363 16 6 3.1932 -0.7037 -3.3730 17 1 3.1754 -1.7859 -3.2439 18 8 4.5108 -0.2892 -3.7391 19 6 2.2235 -0.3114 -4.4578 20 6 2.4881 0.7841 -5.2581 21 6 1.6022 1.1413 -6.2569 22 6 0.4437 0.4093 -6.4497 23 17 -0.6716 0.8627 -7.7003 24 6 0.1747 -0.6837 -5.6463 25 6 1.0650 -1.0449 -4.6492 26 9 0.8037 -2.1127 -3.8640 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 0.7085 1.1606 3.4845 31 1 0.6865 -2.1467 -1.9068 32 1 2.4110 -2.5541 -2.0747 33 1 1.6321 -2.6220 -0.4757 34 1 4.6007 0.6646 -3.8708 35 1 3.3896 1.3590 -5.1053 36 1 1.8119 1.9948 -6.8845 37 1 -0.7291 -1.2554 -5.7966 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291542011.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:22 Heat of formation + Delta-G solvation = -119.385239 kcal Electronic energy + Delta-G solvation = -24702.536223 eV Core-core repulsion = 20806.024800 eV Total energy + Delta-G solvation = -3896.511423 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.17883 -41.49871 -40.04345 -38.09201 -37.39893 -36.89022 -34.89673 -32.75217 -31.90865 -31.37807 -28.04331 -27.68673 -27.30800 -24.12664 -23.83171 -22.59256 -20.47404 -19.49124 -18.71416 -18.44676 -18.17514 -17.65529 -17.37944 -16.94275 -16.52971 -16.21970 -15.77868 -15.45235 -15.24394 -14.94152 -14.70437 -14.41583 -14.37037 -13.90932 -13.75005 -13.49967 -13.15838 -13.06834 -12.87298 -12.74103 -12.70963 -12.59830 -12.51658 -12.21589 -12.12365 -12.07583 -11.89762 -11.22566 -10.72790 -10.53163 -10.10161 -9.70685 -9.39577 -8.16646 -6.33145 -0.29007 -0.03767 0.90182 1.40675 1.42071 1.50738 1.54201 2.08025 2.33197 2.44577 3.02726 3.11580 3.16515 3.33430 3.49839 3.52285 3.76400 3.93126 4.18053 4.35695 4.41385 4.65346 4.70007 4.72085 4.80925 4.85306 4.96809 5.01501 5.01646 5.05238 5.43267 5.50146 5.52062 5.62598 5.97189 6.12864 6.35622 6.68627 6.73199 7.16671 7.39327 8.87764 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.021748 B = 0.003708 C = 0.003542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.189021 B = 7549.182223 C = 7904.029714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.262 3.738 3 H 0.011 0.989 4 C -0.541 4.541 5 H 0.060 0.940 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.964 3.036 9 H -0.282 1.282 10 H -0.279 1.279 11 H -0.262 1.262 12 N -0.588 5.588 13 C 0.070 3.930 14 C 0.473 3.527 15 O -0.588 6.588 16 C 0.145 3.855 17 H 0.144 0.856 18 O -0.535 6.535 19 C -0.156 4.156 20 C -0.065 4.065 21 C -0.111 4.111 22 C -0.009 4.009 23 Cl -0.046 7.046 24 C -0.146 4.146 25 C 0.115 3.885 26 F -0.125 7.125 27 H 0.069 0.931 28 H 0.018 0.982 29 H 0.045 0.955 30 H 0.265 0.735 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.392 0.608 35 H 0.161 0.839 36 H 0.170 0.830 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.442 -4.224 -20.497 20.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.160 3.840 3 H 0.029 0.971 4 C -0.579 4.579 5 H 0.078 0.922 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.789 3.211 9 H -0.208 1.208 10 H -0.204 1.204 11 H -0.186 1.186 12 N -0.318 5.318 13 C -0.072 4.072 14 C 0.261 3.739 15 O -0.470 6.470 16 C 0.082 3.918 17 H 0.161 0.839 18 O -0.343 6.343 19 C -0.158 4.158 20 C -0.083 4.083 21 C -0.129 4.129 22 C -0.036 4.036 23 Cl -0.017 7.017 24 C -0.165 4.165 25 C 0.096 3.904 26 F -0.103 7.103 27 H 0.088 0.912 28 H 0.037 0.963 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.089 0.911 34 H 0.244 0.756 35 H 0.178 0.822 36 H 0.187 0.813 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.340 -4.182 -20.261 20.731 hybrid contribution -0.106 0.280 1.253 1.288 sum -1.446 -3.902 -19.008 19.458 Atomic orbital electron populations 1.21844 0.96929 1.00097 0.99907 1.18580 0.91651 0.92224 0.81546 0.97062 1.21560 1.32036 1.13177 0.91177 0.92152 1.25711 0.94978 0.95628 1.01944 1.70012 1.37134 1.23841 1.24484 0.85466 0.77822 0.79216 0.78588 1.20810 1.20440 1.18634 1.48250 1.47911 1.13263 1.22398 1.22223 1.01683 0.80605 1.02708 1.21768 0.78797 0.86615 0.86758 1.90623 1.56123 1.21322 1.78959 1.20638 0.82840 1.00993 0.87337 0.83866 1.86590 1.26389 1.30801 1.90478 1.20350 0.96313 0.99121 1.00032 1.21021 1.00434 0.93858 0.92965 1.21361 0.92028 1.00801 0.98719 1.20777 0.93164 0.96416 0.93240 1.98396 1.61050 1.91780 1.50484 1.21120 1.01249 0.98756 0.95375 1.17327 0.94630 0.86614 0.91878 1.91505 1.93814 1.53047 1.71948 0.91208 0.96280 0.93560 0.92571 0.90632 0.89607 0.91148 0.75624 0.82206 0.81274 0.81730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.27 8.97 71.98 0.65 -5.63 16 2 C 0.26 13.71 2.63 44.25 0.12 13.83 16 3 H 0.01 0.71 6.92 -2.39 -0.02 0.69 16 4 C -0.54 -29.67 8.04 25.60 0.21 -29.46 16 5 H 0.06 3.23 7.24 -2.91 -0.02 3.21 16 6 C 0.02 0.94 5.30 84.65 0.45 1.39 16 7 N -0.92 -52.74 11.32 21.45 0.24 -52.50 16 8 Si 0.96 43.22 29.54 68.60 2.03 45.24 16 9 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 12 N -0.59 -25.16 2.75 -826.80 -2.28 -27.44 16 13 C 0.07 2.32 7.92 127.77 1.01 3.33 16 14 C 0.47 19.43 6.80 87.66 0.60 20.03 16 15 O -0.59 -28.82 15.84 13.30 0.21 -28.61 16 16 C 0.14 4.30 3.05 29.10 0.09 4.39 16 17 H 0.14 3.84 5.17 -2.39 -0.01 3.83 16 18 O -0.54 -15.08 12.94 -132.65 -1.72 -16.79 16 19 C -0.16 -3.97 5.04 -19.82 -0.10 -4.07 16 20 C -0.06 -1.34 9.31 22.26 0.21 -1.13 16 21 C -0.11 -1.92 9.83 22.30 0.22 -1.70 16 22 C -0.01 -0.17 6.32 22.32 0.14 -0.03 16 23 Cl -0.05 -0.75 28.96 -2.72 -0.08 -0.83 16 24 C -0.15 -2.92 9.81 22.34 0.22 -2.70 16 25 C 0.12 2.77 7.24 22.37 0.16 2.93 16 26 F -0.12 -3.06 12.52 44.97 0.56 -2.50 16 27 H 0.07 3.75 6.07 -2.39 -0.01 3.73 16 28 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 2.05 7.67 -2.39 -0.02 2.03 16 30 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 31 H 0.08 2.30 6.02 -2.39 -0.01 2.28 16 32 H 0.09 2.31 5.40 -2.39 -0.01 2.30 16 33 H 0.07 2.49 6.96 -2.39 -0.02 2.47 16 34 H 0.39 9.29 6.91 -74.06 -0.51 8.78 16 35 H 0.16 2.69 6.45 -2.91 -0.02 2.67 16 36 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.17 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -68.57 322.81 3.56 -65.01 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.63 Total: 17.21 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 3.96 Total: 1.20 kcal Atomic # 7 Polarization: -77.90 SS G_CDS: -2.03 Total: -79.94 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -1.51 Total: -45.40 kcal Atomic # 9 Polarization: -3.06 SS G_CDS: 0.56 Total: -2.50 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.83 kcal Total: -68.57 3.56 -65.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291542011.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.375 kcal (2) G-P(sol) polarization free energy of solvation -68.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds