Wall clock time and date at job start Tue Mar 31 2020 10:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47058 * 90.00047 * 9 7 5 11 11 H 1.48493 * 109.47227 * 209.99949 * 9 7 5 12 12 H 1.48503 * 109.47109 * 330.00183 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21283 * 120.00233 * 0.02562 * 14 13 3 16 16 C 1.50697 * 120.00012 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.47723 * 305.00451 * 16 14 13 18 18 O 1.42899 * 109.47304 * 185.00143 * 16 14 13 19 19 C 1.50704 * 109.47181 * 65.00387 * 16 14 13 20 20 C 1.38227 * 119.99885 * 94.72483 * 19 16 14 21 21 C 1.38207 * 120.03545 * 179.73130 * 20 19 16 22 22 C 1.38385 * 120.03737 * 0.54403 * 21 20 19 23 23 Cl 1.73600 * 119.99854 * 179.75204 * 22 21 20 24 24 C 1.38287 * 120.00003 * 359.72676 * 22 21 20 25 25 C 1.38441 * 119.99771 * 275.00205 * 19 16 14 26 26 F 1.35095 * 120.02310 * 359.97438 * 25 19 16 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 33 33 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 34 34 H 0.96698 * 114.00097 * 300.00388 * 18 16 14 35 35 H 1.08003 * 119.98048 * 359.97438 * 20 19 16 36 36 H 1.07999 * 119.98179 * 180.27445 * 21 20 19 37 37 H 1.08005 * 120.01987 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5539 -0.3519 -0.7599 11 1 6.3835 0.9216 -2.8165 12 1 6.5575 2.0721 -0.6889 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3397 2.6319 0.4345 16 6 0.0363 3.3375 2.6549 17 1 0.1525 2.6373 3.4822 18 8 -1.3280 3.7544 2.5719 19 6 0.9155 4.5393 2.8869 20 6 0.4953 5.7918 2.4804 21 6 1.2986 6.8953 2.6977 22 6 2.5294 6.7459 3.3123 23 17 3.5403 8.1317 3.5790 24 6 2.9538 5.4927 3.7146 25 6 2.1465 4.3880 3.5019 26 9 2.5599 3.1633 3.8947 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 3.8292 -0.0609 -2.9500 33 1 2.2719 2.1231 1.9979 34 1 -1.5053 4.3800 1.8561 35 1 -0.4631 5.9088 1.9962 36 1 0.9674 7.8742 2.3837 37 1 3.9141 5.3758 4.1947 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291774258.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:25 Heat of formation + Delta-G solvation = -139.366253 kcal Electronic energy + Delta-G solvation = -24596.220982 eV Core-core repulsion = 20698.843117 eV Total energy + Delta-G solvation = -3897.377865 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.18744 -41.42484 -40.03996 -38.08568 -37.36867 -36.63064 -34.42845 -33.20375 -32.22050 -31.83048 -29.29827 -27.74965 -25.01324 -24.10699 -23.48488 -22.12937 -21.20140 -19.60572 -19.27186 -18.11047 -18.06059 -17.76809 -17.18746 -16.82339 -16.53456 -16.40996 -16.01525 -15.36959 -15.14055 -15.05124 -14.59236 -14.55171 -14.30316 -14.08758 -13.69581 -13.49659 -13.21127 -12.93919 -12.93397 -12.75182 -12.68541 -12.51470 -12.19267 -12.09743 -12.07605 -11.92270 -11.61811 -11.08427 -10.72597 -10.54183 -10.10062 -9.77300 -9.65326 -8.18055 -6.35262 -0.27747 -0.03905 0.91067 1.42841 1.43284 1.53419 1.61080 2.17185 2.33502 2.52545 3.00924 3.11182 3.21585 3.28579 3.52935 3.81892 3.86324 3.96514 4.28134 4.37648 4.47273 4.55383 4.66502 4.73337 4.79988 4.97474 5.03315 5.04067 5.23443 5.40600 5.50326 5.51849 5.56947 5.75095 5.85791 6.13999 6.40302 6.70842 6.85900 7.27800 7.43351 8.87098 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.011805 B = 0.005021 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.350328 B = 5575.490615 C = 7237.980673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 C 0.278 3.722 4 H 0.004 0.996 5 C -0.548 4.548 6 H 0.065 0.935 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.965 3.035 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.266 1.266 13 N -0.700 5.700 14 C 0.475 3.525 15 O -0.569 6.569 16 C 0.148 3.852 17 H 0.142 0.858 18 O -0.530 6.530 19 C -0.156 4.156 20 C -0.066 4.066 21 C -0.109 4.109 22 C -0.010 4.010 23 Cl -0.048 7.048 24 C -0.146 4.146 25 C 0.111 3.889 26 F -0.132 7.132 27 H 0.042 0.958 28 H 0.046 0.954 29 H 0.028 0.972 30 H 0.039 0.961 31 H 0.074 0.926 32 H 0.266 0.734 33 H 0.398 0.602 34 H 0.392 0.608 35 H 0.167 0.833 36 H 0.171 0.829 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.484 13.356 13.400 19.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.162 4.162 3 C 0.175 3.825 4 H 0.022 0.978 5 C -0.587 4.587 6 H 0.083 0.917 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.790 3.210 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.191 1.191 13 N -0.350 5.350 14 C 0.261 3.739 15 O -0.449 6.449 16 C 0.084 3.916 17 H 0.160 0.840 18 O -0.337 6.337 19 C -0.158 4.158 20 C -0.084 4.084 21 C -0.127 4.127 22 C -0.037 4.037 23 Cl -0.019 7.019 24 C -0.165 4.165 25 C 0.091 3.909 26 F -0.110 7.110 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.234 0.766 34 H 0.244 0.756 35 H 0.184 0.816 36 H 0.188 0.812 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.975 12.926 13.098 18.641 hybrid contribution 1.500 -0.124 -0.505 1.588 sum -1.475 12.802 12.592 18.018 Atomic orbital electron populations 1.21679 0.96799 0.99326 1.00279 1.21808 0.93897 0.99111 1.01377 1.18421 0.93701 0.89260 0.81139 0.97839 1.21500 0.91380 1.39165 1.06607 0.91674 1.25692 1.03061 0.94303 0.94953 1.70025 1.36966 1.38162 1.09822 0.85452 0.79437 0.78863 0.77278 1.19681 1.20995 1.19077 1.46441 1.15311 1.55459 1.17810 1.21674 0.82277 0.79463 0.90524 1.90678 1.51865 1.61052 1.41340 1.20465 0.82473 0.93270 0.95351 0.84024 1.86590 1.22798 1.67297 1.57000 1.20453 0.95214 0.97284 1.02859 1.21054 1.01058 0.89648 0.96632 1.21388 0.91928 1.01129 0.98253 1.20780 0.93552 0.88419 1.00982 1.98396 1.68006 1.40501 1.94986 1.21118 1.01793 0.90072 1.03515 1.17334 0.93471 0.80554 0.99496 1.91490 1.90227 1.40803 1.88528 0.93934 0.93466 0.95239 0.94257 0.90721 0.92503 0.76608 0.75614 0.81592 0.81180 0.82072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 8.51 71.98 0.61 -4.94 16 2 C -0.12 -6.08 5.45 30.59 0.17 -5.91 16 3 C 0.28 14.20 2.24 44.24 0.10 14.30 16 4 H 0.00 0.22 7.58 -2.39 -0.02 0.21 16 5 C -0.55 -29.08 8.73 25.60 0.22 -28.85 16 6 H 0.07 3.31 7.74 -2.91 -0.02 3.28 16 7 C 0.02 1.09 5.29 84.66 0.45 1.54 16 8 N -0.91 -51.60 11.29 21.45 0.24 -51.36 16 9 Si 0.96 41.98 29.54 68.60 2.03 44.01 16 10 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 12 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 13 N -0.70 -29.11 4.97 -446.11 -2.22 -31.33 16 14 C 0.48 18.17 5.72 87.66 0.50 18.67 16 15 O -0.57 -25.55 13.46 15.95 0.21 -25.33 16 16 C 0.15 4.15 3.39 29.10 0.10 4.25 16 17 H 0.14 3.67 7.79 -2.39 -0.02 3.65 16 18 O -0.53 -13.83 12.65 -129.99 -1.64 -15.47 16 19 C -0.16 -3.82 5.02 -19.82 -0.10 -3.92 16 20 C -0.07 -1.28 9.30 22.26 0.21 -1.07 16 21 C -0.11 -1.86 9.83 22.30 0.22 -1.64 16 22 C -0.01 -0.20 6.32 22.32 0.14 -0.06 16 23 Cl -0.05 -0.83 28.96 -2.72 -0.08 -0.91 16 24 C -0.15 -3.12 9.81 22.34 0.22 -2.90 16 25 C 0.11 2.75 6.94 22.37 0.16 2.91 16 26 F -0.13 -3.49 14.72 44.97 0.66 -2.83 16 27 H 0.04 1.85 5.64 -2.39 -0.01 1.84 16 28 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.03 1.41 7.85 -2.38 -0.02 1.39 16 30 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.07 4.10 5.95 -2.39 -0.01 4.09 16 32 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 33 H 0.40 15.07 6.24 -92.71 -0.58 14.50 16 34 H 0.39 8.24 7.07 -74.06 -0.52 7.71 16 35 H 0.17 2.37 6.41 -2.91 -0.02 2.35 16 36 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 37 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -64.89 326.45 2.23 -62.65 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: 0.04 Total: 28.21 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 2.99 Total: -7.63 kcal Atomic # 7 Polarization: -80.72 SS G_CDS: -1.98 Total: -82.69 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -1.43 Total: -40.81 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.66 Total: -2.83 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -64.89 2.23 -62.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291774258.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.713 kcal (2) G-P(sol) polarization free energy of solvation -64.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds