Wall clock time and date at job start Tue Mar 31 2020 11:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99874 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00281 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00232 * 3 2 1 6 6 H 1.48499 * 109.46981 * 150.00385 * 3 2 1 7 7 C 1.37876 * 120.00355 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99377 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00339 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47300 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47300 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00109 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00141 * 180.02562 * 11 10 9 14 14 C 1.46506 * 119.99880 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46691 * 179.97438 * 14 13 11 16 16 C 1.53006 * 109.46626 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.46623 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.46953 * 179.97438 * 17 16 15 19 19 C 1.33342 * 125.18778 * 89.71804 * 18 17 16 20 20 C 1.38473 * 114.92981 * 179.79602 * 19 18 17 21 21 C 1.33498 * 114.88240 * 0.50128 * 20 19 18 22 22 Cl 1.73606 * 125.20727 * 179.75737 * 21 20 19 23 23 S 1.75880 * 125.18872 * 270.02976 * 18 17 16 24 24 H 0.96996 * 120.00393 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47043 * 59.99933 * 9 7 2 26 26 H 1.09000 * 109.46978 * 300.00013 * 9 7 2 27 27 H 1.09004 * 109.46930 * 60.00105 * 10 9 7 28 28 H 1.09004 * 109.47059 * 300.00503 * 10 9 7 29 29 H 0.96999 * 120.00043 * 359.97438 * 13 11 10 30 30 H 1.08993 * 109.47068 * 59.99359 * 14 13 11 31 31 H 1.09000 * 109.46872 * 299.99570 * 14 13 11 32 32 H 1.08993 * 109.47839 * 59.99891 * 15 14 13 33 33 H 1.09000 * 109.47160 * 299.99453 * 15 14 13 34 34 H 1.09000 * 109.47050 * 299.99699 * 16 15 14 35 35 H 1.09001 * 109.46801 * 59.99811 * 16 15 14 36 36 H 1.09000 * 109.47486 * 299.99829 * 17 16 15 37 37 H 1.09001 * 109.47362 * 60.00551 * 17 16 15 38 38 H 1.08005 * 122.53987 * 359.97438 * 19 18 17 39 39 H 1.07997 * 122.56009 * 180.23358 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5286 -2.6365 -0.0022 12 8 6.1350 -1.5862 -0.0026 13 7 6.2025 -3.8037 -0.0028 14 6 7.6675 -3.8036 -0.0035 15 6 8.1775 -5.2461 -0.0035 16 6 9.7076 -5.2460 -0.0048 17 6 10.2175 -6.6885 -0.0041 18 6 11.7246 -6.6885 -0.0060 19 6 12.4943 -6.6822 1.0828 20 6 13.8566 -6.6881 0.8345 21 6 14.1921 -6.6886 -0.4577 22 17 15.8166 -6.6894 -1.0700 23 16 12.7363 -6.6890 -1.4447 24 1 -0.4850 0.8400 0.0004 25 1 3.8752 -0.6803 0.8889 26 1 3.8745 -0.6800 -0.8911 27 1 3.6579 -3.1505 -0.8908 28 1 3.6585 -3.1502 0.8892 29 1 5.7175 -4.6437 -0.0021 30 1 8.0312 -3.2899 0.8864 31 1 8.0304 -3.2895 -0.8935 32 1 7.8138 -5.7601 -0.8931 33 1 7.8146 -5.7598 0.8868 34 1 10.0701 -4.7325 -0.8952 35 1 10.0716 -4.7318 0.8848 36 1 9.8550 -7.2017 0.8866 37 1 9.8535 -7.2030 -0.8934 38 1 12.0863 -6.6759 2.0827 39 1 14.5916 -6.6877 1.6257 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291885145.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:29 Heat of formation + Delta-G solvation = -63.042351 kcal Electronic energy + Delta-G solvation = -19712.899619 eV Core-core repulsion = 16385.044583 eV Total energy + Delta-G solvation = -3327.855036 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.67111 -39.20141 -37.78022 -37.04897 -35.53464 -34.94925 -33.32725 -31.64261 -28.82914 -27.54593 -25.34266 -23.71938 -22.77569 -22.30012 -20.98824 -20.40271 -19.18309 -18.43728 -17.49672 -17.02717 -16.88846 -16.68686 -16.21597 -16.11535 -15.02133 -14.97830 -14.77735 -14.64219 -14.47947 -14.18826 -14.03460 -13.59939 -13.47229 -13.39549 -12.90852 -12.77230 -12.46793 -12.29080 -12.11003 -12.00692 -11.95857 -11.92178 -11.75708 -11.70992 -11.45206 -11.39098 -10.77644 -10.74395 -10.03381 -9.56765 -9.48684 -8.31071 -6.33795 -0.19060 0.11756 0.83935 1.24048 1.33302 1.35324 1.50416 1.64042 1.71743 2.31846 2.35382 3.04669 3.68742 3.90305 4.01354 4.07333 4.23559 4.35998 4.39490 4.43919 4.51296 4.54850 4.63509 4.79431 4.81575 4.87240 5.00313 5.02057 5.12327 5.15765 5.30739 5.34571 5.39702 5.45945 5.46338 5.55861 5.62452 6.24181 6.64439 6.72754 7.31702 7.35880 8.84482 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.039017 B = 0.001595 C = 0.001564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.459269 B =17554.356883 C =17897.634254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.937 3.063 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.529 4.529 8 H 0.051 0.949 9 C 0.004 3.996 10 C -0.117 4.117 11 C 0.511 3.489 12 O -0.591 6.591 13 N -0.719 5.719 14 C 0.115 3.885 15 C -0.117 4.117 16 C -0.109 4.109 17 C -0.046 4.046 18 C -0.161 4.161 19 C -0.141 4.141 20 C -0.115 4.115 21 C -0.174 4.174 22 Cl -0.022 7.022 23 S 0.130 5.870 24 H 0.267 0.733 25 H 0.009 0.991 26 H 0.007 0.993 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.418 0.582 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.168 0.832 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.898 -21.331 0.545 37.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.184 4.184 3 Si 0.762 3.238 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.567 4.567 8 H 0.070 0.930 9 C -0.034 4.034 10 C -0.157 4.157 11 C 0.299 3.701 12 O -0.471 6.471 13 N -0.372 5.372 14 C -0.009 4.009 15 C -0.155 4.155 16 C -0.148 4.148 17 C -0.085 4.085 18 C -0.279 4.279 19 C -0.171 4.171 20 C -0.148 4.148 21 C -0.317 4.317 22 Cl 0.006 6.994 23 S 0.393 5.607 24 H 0.076 0.924 25 H 0.027 0.973 26 H 0.026 0.974 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.255 0.745 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.185 0.815 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 31.092 -20.498 -1.077 37.256 hybrid contribution 0.420 0.737 1.289 1.543 sum 31.512 -19.761 0.211 37.196 Atomic orbital electron populations 1.70018 1.07732 1.28068 1.52524 1.25790 0.95482 1.02788 0.94294 0.85846 0.79226 0.79619 0.79119 1.19420 1.20304 1.18683 1.21447 0.91259 0.93752 1.50273 0.93030 1.19231 0.93934 0.94008 0.96277 1.21500 0.89339 0.99741 1.05122 1.21222 0.91060 0.83527 0.74283 1.90639 1.71488 1.33533 1.51488 1.45925 1.07614 1.08457 1.75215 1.21414 0.79278 0.99058 1.01144 1.21712 0.95577 0.93649 1.04516 1.21479 0.94290 0.96091 1.02902 1.20265 0.85620 0.97505 1.05154 1.24896 1.00731 1.07431 0.94845 1.20247 0.91611 1.04385 1.00811 1.20482 0.97770 1.01495 0.95015 1.25380 0.91096 1.17402 0.97815 1.98367 1.16569 1.97244 1.87184 1.84556 0.94009 1.73115 1.09061 0.92391 0.97286 0.97447 0.87868 0.87816 0.74515 0.92881 0.93146 0.89759 0.89253 0.92194 0.91235 0.87564 0.89559 0.81472 0.82160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.98 13.96 21.45 0.30 -58.68 16 2 C 0.01 0.84 5.47 84.65 0.46 1.31 16 3 Si 0.94 46.94 27.47 68.60 1.88 48.82 16 4 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.26 -13.11 6.54 99.48 0.65 -12.46 16 7 C -0.53 -30.53 9.66 25.60 0.25 -30.28 16 8 H 0.05 3.11 7.99 -2.91 -0.02 3.09 16 9 C 0.00 0.17 3.33 29.85 0.10 0.27 16 10 C -0.12 -4.35 5.64 29.85 0.17 -4.18 16 11 C 0.51 17.77 7.83 87.66 0.69 18.45 16 12 O -0.59 -26.23 15.98 -3.04 -0.05 -26.28 16 13 N -0.72 -16.52 5.56 -463.06 -2.57 -19.10 16 14 C 0.11 2.26 5.67 86.38 0.49 2.75 16 15 C -0.12 -1.18 5.33 30.60 0.16 -1.02 16 16 C -0.11 -1.05 5.20 30.60 0.16 -0.89 16 17 C -0.05 -0.33 5.71 29.85 0.17 -0.16 16 18 C -0.16 -1.74 5.76 24.58 0.14 -1.60 16 19 C -0.14 -1.45 10.05 21.22 0.21 -1.24 16 20 C -0.12 -1.37 10.13 21.25 0.22 -1.16 16 21 C -0.17 -2.49 7.10 66.75 0.47 -2.01 16 22 Cl -0.02 -0.32 29.29 -2.72 -0.08 -0.40 16 23 S 0.13 1.73 23.33 -56.49 -1.32 0.41 16 24 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 25 H 0.01 0.46 7.16 -2.38 -0.02 0.44 16 26 H 0.01 0.37 7.53 -2.39 -0.02 0.35 16 27 H 0.10 3.44 8.14 -2.38 -0.02 3.42 16 28 H 0.10 3.45 8.14 -2.39 -0.02 3.44 16 29 H 0.42 6.50 8.47 -92.71 -0.79 5.72 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 39 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -74.84 360.20 2.06 -72.78 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: 0.21 Total: 2.21 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: 3.69 Total: -19.77 kcal Atomic # 7 Polarization: -75.50 SS G_CDS: -2.27 Total: -77.78 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.05 Total: -26.28 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.88 Total: 48.82 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -1.32 Total: 0.41 kcal Atomic # 17 Polarization: -0.32 SS G_CDS: -0.08 Total: -0.40 kcal Total: -74.84 2.06 -72.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291885145.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.733 kcal (2) G-P(sol) polarization free energy of solvation -74.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds