Wall clock time and date at job start Tue Mar 31 2020 10:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46815 * 54.28334 * 3 2 1 5 5 C 1.50698 * 109.46997 * 174.27857 * 3 2 1 6 6 H 1.07998 * 120.00113 * 114.30626 * 5 3 2 7 7 C 1.37885 * 120.00206 * 294.30516 * 5 3 2 8 8 N 1.31513 * 119.99776 * 153.95278 * 7 5 3 9 9 Si 1.86797 * 120.00069 * 333.95752 * 7 5 3 10 10 H 1.48494 * 109.47271 * 179.97438 * 9 7 5 11 11 H 1.48505 * 109.46948 * 300.00130 * 9 7 5 12 12 H 1.48501 * 109.47041 * 59.99513 * 9 7 5 13 13 N 1.46491 * 109.47275 * 294.27990 * 3 2 1 14 14 C 1.34781 * 119.99991 * 84.99959 * 13 3 2 15 15 O 1.21283 * 120.00070 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99955 * 179.97438 * 14 13 3 17 17 O 1.42902 * 109.47131 * 179.97438 * 16 14 13 18 18 C 1.35917 * 116.99985 * 180.02562 * 17 16 14 19 19 C 1.38756 * 120.02779 * 180.02562 * 18 17 16 20 20 C 1.38146 * 120.00203 * 180.02562 * 19 18 17 21 21 C 1.38331 * 120.06787 * 359.97438 * 20 19 18 22 22 Cl 1.73600 * 119.97153 * 180.02562 * 21 20 19 23 23 C 1.38578 * 120.06309 * 0.04542 * 21 20 19 24 24 F 1.35091 * 120.00114 * 179.97438 * 23 21 20 25 25 C 1.38372 * 119.98996 * 359.67904 * 23 21 20 26 26 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 27 27 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 28 28 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 30 30 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 31 31 H 0.96993 * 119.99970 * 354.96768 * 8 7 5 32 32 H 0.97000 * 120.00810 * 264.99777 * 13 3 2 33 33 H 1.08999 * 109.47161 * 300.00319 * 16 14 13 34 34 H 1.08996 * 109.46861 * 60.00556 * 16 14 13 35 35 H 1.07995 * 119.99885 * 0.02562 * 19 18 17 36 36 H 1.08000 * 119.96472 * 180.02562 * 20 19 18 37 37 H 1.07997 * 120.02845 * 180.31571 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5953 1.9850 0.8344 5 6 3.5402 1.4450 0.1416 6 1 4.1585 1.8023 -0.6685 7 6 4.1236 0.9911 1.3056 8 7 5.3469 0.5087 1.2833 9 14 3.1764 1.0612 2.9141 10 1 4.0190 0.5167 4.0089 11 1 2.8198 2.4705 3.2175 12 1 1.9372 0.2518 2.7945 13 7 1.6672 2.0923 -1.2590 14 6 0.4513 2.6586 -1.3909 15 8 -0.3341 2.6307 -0.4672 16 6 0.0681 3.3275 -2.6859 17 8 -1.2589 3.8468 -2.5793 18 6 -1.7612 4.4851 -3.6691 19 6 -3.0434 5.0142 -3.6343 20 6 -3.5535 5.6623 -4.7425 21 6 -2.7870 5.7852 -5.8875 22 17 -3.4303 6.6008 -7.2784 23 6 -1.5062 5.2575 -5.9254 24 9 -0.7589 5.3777 -7.0444 25 6 -0.9906 4.6127 -4.8149 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 5.8116 0.4042 0.4384 32 1 2.2954 2.1150 -1.9977 33 1 0.7620 4.1421 -2.8933 34 1 0.1091 2.6000 -3.4965 35 1 -3.6426 4.9192 -2.7409 36 1 -4.5515 6.0743 -4.7147 37 1 0.0093 4.2057 -4.8420 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293554820.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:44 Heat of formation + Delta-G solvation = -122.872892 kcal Electronic energy + Delta-G solvation = -23241.769002 eV Core-core repulsion = 19345.106343 eV Total energy + Delta-G solvation = -3896.662659 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.13109 -41.57349 -40.52655 -38.66457 -37.35852 -36.92658 -34.51437 -33.34465 -31.99426 -31.24229 -29.76942 -28.39474 -24.52217 -24.09936 -23.65804 -22.29629 -21.28887 -19.93635 -19.80727 -18.37964 -17.80564 -17.62264 -17.58606 -17.06009 -16.95093 -16.81154 -15.99251 -15.59012 -15.30282 -15.14811 -14.65773 -14.52241 -14.35544 -14.20477 -14.06596 -13.87534 -13.58151 -13.10419 -12.88510 -12.78538 -12.64928 -12.50117 -12.29025 -11.98008 -11.77952 -11.74179 -11.57195 -11.23239 -10.79712 -10.40667 -10.16791 -9.86145 -9.34638 -8.81033 -6.40354 -0.13415 -0.06346 0.96456 1.47822 1.49682 1.52782 1.62941 1.71044 2.29716 2.43061 2.71564 2.90537 2.93697 3.44685 3.67684 3.78113 3.91038 4.01957 4.05479 4.31721 4.34076 4.40486 4.54738 4.57146 4.79642 4.84691 4.87238 4.99442 5.10303 5.20707 5.28252 5.35228 5.54727 5.62242 5.69530 6.03425 6.07386 6.55100 6.77979 7.26129 7.37790 8.56322 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.030928 B = 0.002523 C = 0.002425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.110868 B =11095.993912 C =11543.889776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.129 4.129 3 C 0.256 3.744 4 H 0.022 0.978 5 C -0.626 4.626 6 H 0.046 0.954 7 C 0.008 3.992 8 N -0.916 5.916 9 Si 1.060 2.940 10 H -0.283 1.283 11 H -0.274 1.274 12 H -0.255 1.255 13 N -0.696 5.696 14 C 0.502 3.498 15 O -0.566 6.566 16 C 0.042 3.958 17 O -0.299 6.299 18 C 0.157 3.843 19 C -0.148 4.148 20 C -0.032 4.032 21 C -0.122 4.122 22 Cl -0.053 7.053 23 C 0.138 3.862 24 F -0.131 7.131 25 C -0.238 4.238 26 H 0.037 0.963 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.263 0.737 32 H 0.407 0.593 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.161 0.839 36 H 0.178 0.822 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.293 9.331 -15.723 25.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.168 4.168 3 C 0.152 3.848 4 H 0.040 0.960 5 C -0.663 4.663 6 H 0.064 0.936 7 C -0.196 4.196 8 N -0.549 5.549 9 Si 0.883 3.117 10 H -0.208 1.208 11 H -0.199 1.199 12 H -0.180 1.180 13 N -0.347 5.347 14 C 0.287 3.713 15 O -0.445 6.445 16 C -0.036 4.036 17 O -0.211 6.211 18 C 0.110 3.890 19 C -0.166 4.166 20 C -0.050 4.050 21 C -0.150 4.150 22 Cl -0.024 7.024 23 C 0.117 3.883 24 F -0.109 7.109 25 C -0.257 4.257 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.243 0.757 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.179 0.821 36 H 0.196 0.804 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -17.798 9.050 -13.424 24.060 hybrid contribution 1.138 0.311 -2.448 2.717 sum -16.661 9.360 -15.872 24.842 Atomic orbital electron populations 1.21775 0.95605 1.00360 1.01379 1.22137 0.95150 0.98363 1.01155 1.18739 0.93581 0.89507 0.83002 0.96024 1.22134 0.91309 1.48805 1.04064 0.93607 1.26608 0.96696 0.91333 1.04921 1.70961 1.15055 1.38739 1.30131 0.83804 0.75859 0.78312 0.73743 1.20815 1.19944 1.17966 1.45937 1.14925 1.56170 1.17657 1.20516 0.82204 0.79046 0.89499 1.90706 1.51299 1.59930 1.42554 1.22708 0.83428 1.00893 0.96579 1.86201 1.30845 1.68984 1.35073 1.19036 0.93325 0.91440 0.85172 1.20753 0.93610 1.01294 1.00992 1.21034 1.00526 0.94991 0.88458 1.21029 0.94507 1.06669 0.92812 1.98382 1.85891 1.77467 1.40675 1.17200 0.88602 0.99053 0.83413 1.91535 1.75785 1.93915 1.49683 1.21311 1.03739 1.08193 0.92494 0.94341 0.93127 0.92594 0.92472 0.93135 0.92796 0.75733 0.86168 0.85772 0.82108 0.80429 0.81601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.00 8.53 71.98 0.61 -4.39 16 2 C -0.13 -5.39 5.37 30.60 0.16 -5.22 16 3 C 0.26 11.45 1.84 44.25 0.08 11.53 16 4 H 0.02 1.08 6.12 -2.39 -0.01 1.06 16 5 C -0.63 -32.34 8.92 25.60 0.23 -32.12 16 6 H 0.05 2.48 7.96 -2.91 -0.02 2.46 16 7 C 0.01 0.42 5.15 84.66 0.44 0.86 16 8 N -0.92 -53.35 13.70 21.45 0.29 -53.06 16 9 Si 1.06 48.96 26.56 68.60 1.82 50.79 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 12 H -0.26 -10.96 6.34 99.48 0.63 -10.33 16 13 N -0.70 -24.66 5.03 -446.10 -2.24 -26.90 16 14 C 0.50 16.62 6.51 87.66 0.57 17.19 16 15 O -0.57 -23.45 13.64 16.00 0.22 -23.23 16 16 C 0.04 0.91 5.22 71.24 0.37 1.28 16 17 O -0.30 -7.42 9.67 -73.58 -0.71 -8.13 16 18 C 0.16 3.08 6.69 22.50 0.15 3.23 16 19 C -0.15 -2.38 9.98 22.37 0.22 -2.16 16 20 C -0.03 -0.43 9.82 22.27 0.22 -0.21 16 21 C -0.12 -2.08 6.33 22.37 0.14 -1.94 16 22 Cl -0.05 -0.87 28.61 -2.72 -0.08 -0.95 16 23 C 0.14 2.59 7.27 22.38 0.16 2.75 16 24 F -0.13 -2.69 16.83 44.97 0.76 -1.94 16 25 C -0.24 -4.17 9.01 22.40 0.20 -3.97 16 26 H 0.04 1.53 7.89 -2.39 -0.02 1.51 16 27 H 0.05 1.85 5.63 -2.39 -0.01 1.83 16 28 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.05 2.24 5.77 -2.39 -0.01 2.22 16 31 H 0.26 15.24 8.73 -92.71 -0.81 14.43 16 32 H 0.41 12.16 8.53 -92.71 -0.79 11.37 16 33 H 0.12 1.99 7.65 -2.39 -0.02 1.97 16 34 H 0.12 1.93 7.67 -2.39 -0.02 1.91 16 35 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 36 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 37 H 0.17 2.27 6.30 -2.91 -0.02 2.25 16 Total: -1.00 -66.03 329.87 3.84 -62.18 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 0.22 Total: 14.40 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 3.57 Total: -13.16 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -1.95 Total: -79.96 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.49 Total: -31.36 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.76 Total: -1.94 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 1.82 Total: 50.79 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.95 kcal Total: -66.03 3.84 -62.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293554820.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.690 kcal (2) G-P(sol) polarization free energy of solvation -66.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds