Wall clock time and date at job start Tue Mar 31 2020 10:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47513 * 2 1 4 4 N 1.46498 * 109.47074 * 180.02562 * 3 2 1 5 5 C 1.37098 * 119.99884 * 269.99571 * 4 3 2 6 6 H 1.07997 * 120.00153 * 143.15289 * 5 4 3 7 7 C 1.38952 * 119.99823 * 323.15563 * 5 4 3 8 8 N 1.31414 * 120.00503 * 338.18293 * 7 5 4 9 9 Si 1.86805 * 119.99996 * 158.18343 * 7 5 4 10 10 H 1.48505 * 109.47099 * 89.99915 * 9 7 5 11 11 H 1.48498 * 109.47049 * 209.99937 * 9 7 5 12 12 H 1.48506 * 109.46967 * 330.00048 * 9 7 5 13 13 C 1.34779 * 120.00514 * 90.00228 * 4 3 2 14 14 O 1.21292 * 119.99308 * 354.75590 * 13 4 3 15 15 C 1.50698 * 120.00140 * 174.76431 * 13 4 3 16 16 O 1.42900 * 109.46631 * 182.10445 * 15 13 4 17 17 C 1.35926 * 116.99961 * 181.91422 * 16 15 13 18 18 C 1.38755 * 120.02759 * 5.50708 * 17 16 15 19 19 C 1.38144 * 120.00336 * 179.97438 * 18 17 16 20 20 C 1.38332 * 120.06696 * 359.97438 * 19 18 17 21 21 Cl 1.73599 * 119.96771 * 180.27816 * 20 19 18 22 22 C 1.38567 * 120.06105 * 0.02562 * 20 19 18 23 23 F 1.35100 * 120.00115 * 180.02562 * 22 20 19 24 24 C 1.38364 * 119.99852 * 359.97438 * 22 20 19 25 25 H 1.08999 * 109.46987 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46720 * 300.00172 * 1 2 3 27 27 H 1.08995 * 109.46854 * 59.99760 * 1 2 3 28 28 H 1.09000 * 109.47002 * 239.99447 * 2 1 3 29 29 H 1.09005 * 109.47386 * 120.00187 * 2 1 3 30 30 H 1.08993 * 109.47048 * 59.99774 * 3 2 1 31 31 H 1.09003 * 109.46681 * 299.99730 * 3 2 1 32 32 H 0.96998 * 120.00371 * 185.05721 * 8 7 5 33 33 H 1.08999 * 109.46749 * 62.11314 * 15 13 4 34 34 H 1.08992 * 109.47155 * 302.10341 * 15 13 4 35 35 H 1.07998 * 119.99768 * 359.97438 * 18 17 16 36 36 H 1.08001 * 119.96118 * 179.97438 * 19 18 17 37 37 H 1.08004 * 120.03692 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4423 -0.0006 5 6 4.1910 1.4422 1.1864 6 1 5.1092 0.8813 1.2794 7 6 3.7049 2.1638 2.2698 8 7 2.8708 3.1603 2.0747 9 14 4.2370 1.7172 4.0039 10 1 5.4587 2.4830 4.3595 11 1 3.1484 2.0512 4.9572 12 1 4.5269 0.2624 4.0735 13 6 4.1786 1.4425 -1.1681 14 8 3.5754 1.3467 -2.2160 15 6 5.6809 1.5615 -1.1713 16 8 6.1536 1.5872 -2.5196 17 6 7.4992 1.6516 -2.7005 18 6 8.3513 1.5741 -1.6081 19 6 9.7188 1.6391 -1.7927 20 6 10.2403 1.7809 -3.0660 21 17 11.9594 1.8551 -3.2957 22 6 9.3920 1.8586 -4.1589 23 9 9.9026 1.9966 -5.4020 24 6 8.0218 1.7938 -3.9771 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.6768 1.9562 -0.8901 32 1 2.5887 3.7102 2.8223 33 1 6.1140 0.7075 -0.6507 34 1 5.9735 2.4818 -0.6661 35 1 7.9453 1.4630 -0.6135 36 1 10.3813 1.5792 -0.9418 37 1 7.3600 1.8546 -4.8284 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293742655.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:34 Heat of formation + Delta-G solvation = -112.880841 kcal Electronic energy + Delta-G solvation = -23440.073912 eV Core-core repulsion = 19543.844541 eV Total energy + Delta-G solvation = -3896.229371 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.12612 -41.44732 -40.30971 -38.57860 -37.33451 -36.89954 -34.57131 -33.29558 -32.19744 -30.90734 -29.44452 -27.46165 -26.10250 -24.27328 -23.48278 -22.38752 -21.12917 -19.76623 -19.13795 -17.95508 -17.75145 -17.62208 -17.32806 -16.96213 -16.81024 -16.44779 -16.17081 -15.52175 -15.33767 -15.20801 -15.01162 -14.37130 -14.18414 -14.01116 -13.86481 -13.43817 -13.26942 -13.23999 -12.99422 -12.77094 -12.60067 -12.51326 -12.38593 -12.07965 -12.00963 -11.93959 -11.66025 -11.51459 -11.04013 -10.43002 -10.12007 -9.50676 -9.32782 -8.33015 -6.10314 -0.13777 -0.01858 0.96700 1.42246 1.53901 1.63265 1.69793 1.92281 2.30921 2.33727 2.91781 3.02236 3.18628 3.58049 3.76804 3.95879 4.05012 4.14913 4.21127 4.24681 4.34678 4.37762 4.53888 4.55851 4.78195 4.81122 4.91068 4.96916 5.08787 5.08918 5.21018 5.34709 5.37890 5.43696 5.56097 5.95224 6.16095 6.39174 7.08565 7.48497 7.93491 8.69522 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.017103 B = 0.003223 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.791193 B = 8684.995103 C =10001.356425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.124 4.124 3 C 0.115 3.885 4 N -0.438 5.438 5 C -0.370 4.370 6 H 0.108 0.892 7 C 0.014 3.986 8 N -0.887 5.887 9 Si 0.982 3.018 10 H -0.267 1.267 11 H -0.286 1.286 12 H -0.259 1.259 13 C 0.450 3.550 14 O -0.626 6.626 15 C 0.072 3.928 16 O -0.311 6.311 17 C 0.155 3.845 18 C -0.203 4.203 19 C -0.028 4.028 20 C -0.120 4.120 21 Cl -0.049 7.049 22 C 0.142 3.858 23 F -0.127 7.127 24 C -0.189 4.189 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.050 0.950 28 H 0.039 0.961 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.032 0.968 32 H 0.276 0.724 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.164 0.836 36 H 0.178 0.822 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.647 -3.349 -1.243 12.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.163 4.163 3 C -0.008 4.008 4 N -0.156 5.156 5 C -0.497 4.497 6 H 0.125 0.875 7 C -0.191 4.191 8 N -0.522 5.522 9 Si 0.805 3.195 10 H -0.192 1.192 11 H -0.211 1.211 12 H -0.183 1.183 13 C 0.239 3.761 14 O -0.514 6.514 15 C -0.005 4.005 16 O -0.223 6.223 17 C 0.108 3.892 18 C -0.222 4.222 19 C -0.047 4.047 20 C -0.148 4.148 21 Cl -0.020 7.020 22 C 0.122 3.878 23 F -0.106 7.106 24 C -0.209 4.209 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.113 0.887 31 H 0.051 0.949 32 H 0.085 0.915 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.182 0.818 36 H 0.195 0.805 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 11.179 -3.277 -1.828 11.792 hybrid contribution 0.152 0.219 0.447 0.520 sum 11.331 -3.059 -1.382 11.818 Atomic orbital electron populations 1.21622 0.93740 1.02386 1.01740 1.21713 0.97174 0.96736 1.00648 1.21469 0.80955 0.96641 1.01766 1.43616 1.05296 1.62268 1.04449 1.19852 1.10693 1.31464 0.87693 0.87465 1.26219 0.95943 0.93106 1.03839 1.69962 1.33190 1.15124 1.33965 0.85096 0.78042 0.79490 0.76825 1.19185 1.21147 1.18284 1.20561 0.89759 0.81761 0.83997 1.90541 1.71044 1.56920 1.32922 1.22354 0.92635 1.04810 0.80717 1.86136 1.19074 1.87379 1.29751 1.19007 0.82798 0.93340 0.94038 1.21635 0.93427 1.07434 0.99668 1.21035 0.94684 0.93547 0.95389 1.20916 0.85802 1.13581 0.94453 1.98369 1.09176 1.97082 1.97384 1.16941 0.90317 1.01285 0.79287 1.91529 1.87180 1.92921 1.38933 1.20262 0.93193 1.10003 0.97453 0.90914 0.92422 0.93045 0.94214 0.92171 0.88729 0.94924 0.91452 0.87411 0.88047 0.81826 0.80497 0.83117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.32 9.91 71.98 0.71 -3.61 16 2 C -0.12 -4.90 6.26 30.59 0.19 -4.71 16 3 C 0.11 5.37 4.97 86.38 0.43 5.80 16 4 N -0.44 -20.95 2.52 -635.55 -1.60 -22.55 16 5 C -0.37 -16.73 8.58 84.04 0.72 -16.00 16 6 H 0.11 4.34 7.15 -2.91 -0.02 4.32 16 7 C 0.01 0.62 4.95 84.93 0.42 1.04 16 8 N -0.89 -43.45 11.44 21.66 0.25 -43.21 16 9 Si 0.98 35.05 29.61 68.60 2.03 37.08 16 10 H -0.27 -9.15 7.11 99.48 0.71 -8.44 16 11 H -0.29 -10.42 7.11 99.48 0.71 -9.71 16 12 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 13 C 0.45 21.51 7.70 87.66 0.67 22.18 16 14 O -0.63 -34.16 16.13 15.96 0.26 -33.91 16 15 C 0.07 2.68 3.99 71.24 0.28 2.96 16 16 O -0.31 -11.68 9.67 -73.69 -0.71 -12.39 16 17 C 0.16 4.60 6.68 22.50 0.15 4.75 16 18 C -0.20 -4.74 9.06 22.37 0.20 -4.54 16 19 C -0.03 -0.56 9.82 22.27 0.22 -0.34 16 20 C -0.12 -2.70 6.33 22.37 0.14 -2.56 16 21 Cl -0.05 -1.00 28.61 -2.72 -0.08 -1.08 16 22 C 0.14 3.63 7.27 22.38 0.16 3.79 16 23 F -0.13 -3.31 16.83 44.97 0.76 -2.55 16 24 C -0.19 -5.29 9.96 22.40 0.22 -5.06 16 25 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.06 1.74 8.14 -2.38 -0.02 1.73 16 27 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 30 H 0.09 4.64 5.49 -2.39 -0.01 4.63 16 31 H 0.03 1.62 7.50 -2.39 -0.02 1.61 16 32 H 0.28 12.72 8.32 -92.71 -0.77 11.95 16 33 H 0.11 3.37 6.80 -2.39 -0.02 3.35 16 34 H 0.10 3.56 7.96 -2.39 -0.02 3.54 16 35 H 0.16 3.32 6.29 -2.91 -0.02 3.30 16 36 H 0.18 2.34 8.06 -2.91 -0.02 2.32 16 37 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -59.46 337.94 6.53 -52.93 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 1.10 Total: 21.95 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 4.53 Total: 3.72 kcal Atomic # 7 Polarization: -64.40 SS G_CDS: -1.36 Total: -65.76 kcal Atomic # 8 Polarization: -45.84 SS G_CDS: -0.46 Total: -46.30 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.76 Total: -2.55 kcal Atomic # 14 Polarization: 35.05 SS G_CDS: 2.03 Total: 37.08 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -0.08 Total: -1.08 kcal Total: -59.46 6.53 -52.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293742655.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.952 kcal (2) G-P(sol) polarization free energy of solvation -59.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds