Wall clock time and date at job start Tue Mar 31 2020 11:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31376 * 1 3 3 Si 1.86808 * 120.00169 * 2 1 4 4 H 1.48504 * 109.46722 * 239.99862 * 3 2 1 5 5 H 1.48494 * 109.46976 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47100 * 119.99961 * 3 2 1 7 7 C 1.39023 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00678 * 189.50228 * 7 2 1 9 9 N 1.36907 * 119.99958 * 9.50381 * 7 2 1 10 10 C 1.34778 * 119.99462 * 44.31776 * 9 7 2 11 11 O 1.21621 * 120.00524 * 4.56557 * 10 9 7 12 12 C 1.47504 * 119.99734 * 184.57244 * 10 9 7 13 13 C 1.39783 * 120.08451 * 318.69520 * 12 10 9 14 14 C 1.37715 * 119.94592 * 180.02562 * 13 12 10 15 15 C 1.38942 * 120.12450 * 0.02562 * 14 13 12 16 16 O 1.35759 * 119.91534 * 179.97438 * 15 14 13 17 17 C 1.42901 * 117.00225 * 0.02562 * 16 15 14 18 18 F 1.39900 * 109.46708 * 300.00082 * 17 16 15 19 19 F 1.39895 * 109.47039 * 59.99576 * 17 16 15 20 20 C 1.39185 * 120.16872 * 0.02562 * 15 14 13 21 21 F 1.35105 * 119.97148 * 179.97438 * 20 15 14 22 22 C 1.37876 * 120.05635 * 0.25111 * 20 15 14 23 23 C 1.46498 * 120.00251 * 224.32139 * 9 7 2 24 24 C 1.52997 * 117.50001 * 5.59781 * 23 9 7 25 25 C 1.52998 * 60.00313 * 252.51492 * 24 23 9 26 26 H 0.97006 * 120.00103 * 4.99220 * 1 2 3 27 27 H 1.08005 * 120.02797 * 0.02562 * 13 12 10 28 28 H 1.08001 * 119.93865 * 179.97438 * 14 13 12 29 29 H 1.09001 * 109.47425 * 179.97438 * 17 16 15 30 30 H 1.08000 * 120.06215 * 179.70812 * 22 20 15 31 31 H 1.08995 * 115.54794 * 151.31261 * 23 9 7 32 32 H 1.09007 * 117.49658 * 0.02562 * 24 23 9 33 33 H 1.08997 * 117.50026 * 145.01738 * 24 23 9 34 34 H 1.08994 * 117.49894 * 252.51197 * 25 24 23 35 35 H 1.08999 * 117.52006 * 107.47858 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 3.1016 1.6963 -1.2125 5 1 1.2829 2.7465 -0.0006 6 1 3.1016 1.6964 1.2125 7 6 2.0089 -1.2040 0.0005 8 1 3.0778 -1.2104 0.1549 9 7 1.3385 -2.3816 -0.1947 10 6 0.4069 -2.4738 -1.1643 11 8 0.2201 -1.5387 -1.9192 12 6 -0.3864 -3.7088 -1.3097 13 6 0.2289 -4.9567 -1.1754 14 6 -0.5144 -6.1079 -1.3123 15 6 -1.8748 -6.0315 -1.5842 16 8 -2.6033 -7.1691 -1.7188 17 6 -1.9065 -8.4075 -1.5678 18 9 -0.8943 -8.4932 -2.5297 19 9 -1.3416 -8.4718 -0.2895 20 6 -2.4923 -4.7915 -1.7199 21 9 -3.8153 -4.7218 -1.9848 22 6 -1.7540 -3.6344 -1.5900 23 6 1.6337 -3.5414 0.6502 24 6 2.6038 -3.3378 1.8157 25 6 3.0464 -4.1248 0.5806 26 1 -0.4850 0.8369 -0.0731 27 1 1.2864 -5.0180 -0.9645 28 1 -0.0388 -7.0721 -1.2089 29 1 -2.6037 -9.2351 -1.6986 30 1 -2.2322 -2.6723 -1.7000 31 1 0.8083 -4.2377 0.7978 32 1 3.0221 -2.3407 1.9540 33 1 2.4166 -3.9000 2.7304 34 1 3.1504 -5.2050 0.6827 35 1 3.7560 -3.6460 -0.0942 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294209633.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:02 Heat of formation + Delta-G solvation = -144.859616 kcal Electronic energy + Delta-G solvation = -26689.563712 eV Core-core repulsion = 22240.150957 eV Total energy + Delta-G solvation = -4449.412755 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.54772 -48.63533 -47.53125 -39.95541 -38.83304 -36.93713 -36.01804 -32.89781 -31.21841 -30.55839 -29.94297 -26.60311 -25.06612 -23.09892 -22.83956 -21.79203 -21.13488 -19.88756 -19.16012 -18.28589 -18.11455 -17.55768 -16.44213 -16.23930 -15.75484 -15.60852 -15.53188 -14.73232 -14.54481 -14.48587 -13.95628 -13.88824 -13.84298 -13.77538 -13.73651 -13.21798 -13.04210 -12.72273 -12.56237 -12.18046 -11.68448 -11.56619 -11.19401 -11.03289 -10.96561 -10.89081 -10.65574 -10.26331 -10.02743 -9.81354 -8.83661 -8.75931 -8.32080 -8.04247 -7.14506 -6.15507 -4.00002 1.15205 1.33532 2.35190 3.24558 3.26451 3.33312 3.34363 3.50876 4.05987 4.07139 4.25998 4.31384 4.42441 4.66677 4.75978 4.86788 5.12142 5.15852 5.39656 5.42696 5.52977 5.59164 5.69839 5.83345 6.00196 6.14147 6.18641 6.26832 6.42997 6.48658 6.65877 6.70449 6.86360 7.07847 7.51973 8.16389 8.94289 9.03928 9.51408 10.15713 10.89517 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.019699 B = 0.004370 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.060736 B = 6406.439506 C = 7411.614831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.063 3.937 3 Si 0.916 3.084 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.336 4.336 8 H 0.082 0.918 9 N -0.415 5.415 10 C 0.517 3.483 11 O -0.519 6.519 12 C -0.083 4.083 13 C -0.078 4.078 14 C -0.172 4.172 15 C 0.066 3.934 16 O -0.316 6.316 17 C 0.412 3.588 18 F -0.198 7.198 19 F -0.198 7.198 20 C 0.079 3.921 21 F -0.133 7.133 22 C -0.077 4.077 23 C 0.065 3.935 24 C -0.174 4.174 25 C -0.209 4.209 26 H 0.267 0.733 27 H 0.147 0.853 28 H 0.141 0.859 29 H 0.181 0.819 30 H 0.153 0.847 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.328 -16.476 -0.004 16.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.148 4.148 3 Si 0.743 3.257 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.201 1.201 7 C -0.463 4.463 8 H 0.099 0.901 9 N -0.135 5.135 10 C 0.304 3.696 11 O -0.396 6.396 12 C -0.087 4.087 13 C -0.096 4.096 14 C -0.190 4.190 15 C 0.021 3.979 16 O -0.233 6.233 17 C 0.322 3.678 18 F -0.180 7.180 19 F -0.180 7.180 20 C 0.060 3.940 21 F -0.112 7.112 22 C -0.096 4.096 23 C -0.041 4.041 24 C -0.211 4.211 25 C -0.248 4.248 26 H 0.078 0.922 27 H 0.164 0.836 28 H 0.158 0.842 29 H 0.198 0.802 30 H 0.171 0.829 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.812 -15.841 -0.379 16.093 hybrid contribution 0.378 0.578 0.134 0.703 sum -2.435 -15.263 -0.246 15.458 Atomic orbital electron populations 1.69807 1.06397 1.28015 1.42078 1.25315 0.95042 0.99486 0.94974 0.86205 0.79188 0.81730 0.78578 1.19937 1.21027 1.20129 1.18905 0.91503 0.82516 1.53412 0.90081 1.42614 1.35830 1.08832 1.26213 1.17472 0.83597 0.85732 0.82755 1.90643 1.67434 1.38282 1.43266 1.20484 0.93517 0.95484 0.99236 1.21546 1.01132 0.90434 0.96528 1.21291 0.91434 1.00712 1.05582 1.18883 0.91210 0.84319 1.03441 1.86591 1.37476 1.12483 1.86784 1.23351 0.83075 0.89088 0.72317 1.93104 1.64237 1.96226 1.64420 1.93103 1.86998 1.96361 1.41505 1.16744 0.78468 0.90950 1.07876 1.91488 1.30863 1.96999 1.91844 1.21156 0.93508 0.97269 0.97712 1.22000 0.91780 0.93070 0.97241 1.23118 1.04119 1.02167 0.91736 1.23378 1.00321 0.98574 1.02527 0.92223 0.83565 0.84171 0.80249 0.82926 0.87224 0.87395 0.89647 0.89532 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.03 11.24 55.50 0.62 -23.40 16 2 C 0.06 1.71 4.67 -17.46 -0.08 1.63 16 3 Si 0.92 21.22 29.57 -169.99 -5.03 16.19 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 7 C -0.34 -8.88 7.85 -14.99 -0.12 -9.00 16 8 H 0.08 2.05 7.32 -52.49 -0.38 1.66 16 9 N -0.42 -10.15 2.85 -108.91 -0.31 -10.46 16 10 C 0.52 13.10 6.44 -12.48 -0.08 13.02 16 11 O -0.52 -15.24 14.63 5.26 0.08 -15.16 16 12 C -0.08 -1.72 5.28 -104.96 -0.55 -2.27 16 13 C -0.08 -1.32 7.47 -39.20 -0.29 -1.61 16 14 C -0.17 -2.58 8.23 -39.51 -0.33 -2.90 16 15 C 0.07 1.03 6.50 -38.97 -0.25 0.78 16 16 O -0.32 -4.14 10.28 -18.99 -0.20 -4.33 16 17 C 0.41 3.74 5.98 101.05 0.60 4.34 16 18 F -0.20 -2.09 15.57 2.25 0.04 -2.06 16 19 F -0.20 -2.08 15.57 2.25 0.04 -2.04 16 20 C 0.08 1.39 7.30 -39.36 -0.29 1.10 16 21 F -0.13 -2.30 17.10 2.25 0.04 -2.26 16 22 C -0.08 -1.50 9.62 -39.13 -0.38 -1.88 16 23 C 0.07 1.26 4.39 -67.93 -0.30 0.96 16 24 C -0.17 -3.01 9.80 -26.73 -0.26 -3.27 16 25 C -0.21 -3.37 9.53 -26.73 -0.25 -3.62 16 26 H 0.27 7.47 8.32 -40.82 -0.34 7.13 16 27 H 0.15 2.33 5.54 -52.48 -0.29 2.03 16 28 H 0.14 1.82 5.07 -52.49 -0.27 1.55 16 29 H 0.18 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.15 3.11 8.06 -52.49 -0.42 2.69 16 31 H 0.11 1.99 5.87 -51.93 -0.30 1.68 16 32 H 0.11 2.06 6.79 -51.92 -0.35 1.71 16 33 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 310.71 15.07 4.68 4.68 Total: -1.00 -32.54 310.71 -5.47 -38.01 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -2.85 Total: 3.56 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -2.58 Total: -2.72 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.31 Total: -33.86 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.12 Total: -19.49 kcal Atomic # 9 Polarization: -6.47 SS G_CDS: 0.11 Total: -6.36 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -32.54 -5.47 -38.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294209633.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.852 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds