Wall clock time and date at job start Tue Mar 31 2020 11:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31376 * 1 3 3 Si 1.86808 * 120.00169 * 2 1 4 4 H 1.48504 * 109.46722 * 239.99862 * 3 2 1 5 5 H 1.48494 * 109.46976 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47100 * 119.99961 * 3 2 1 7 7 C 1.39023 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00678 * 189.50228 * 7 2 1 9 9 N 1.36907 * 119.99958 * 9.50381 * 7 2 1 10 10 C 1.34778 * 119.99462 * 44.31776 * 9 7 2 11 11 O 1.21621 * 120.00524 * 4.56557 * 10 9 7 12 12 C 1.47504 * 119.99734 * 184.57244 * 10 9 7 13 13 C 1.39783 * 120.08451 * 318.69520 * 12 10 9 14 14 C 1.37715 * 119.94592 * 180.02562 * 13 12 10 15 15 C 1.38942 * 120.12450 * 0.02562 * 14 13 12 16 16 O 1.35759 * 119.91534 * 179.97438 * 15 14 13 17 17 C 1.42901 * 117.00225 * 0.02562 * 16 15 14 18 18 F 1.39900 * 109.46708 * 300.00082 * 17 16 15 19 19 F 1.39895 * 109.47039 * 59.99576 * 17 16 15 20 20 C 1.39185 * 120.16872 * 0.02562 * 15 14 13 21 21 F 1.35105 * 119.97148 * 179.97438 * 20 15 14 22 22 C 1.37876 * 120.05635 * 0.25111 * 20 15 14 23 23 C 1.46498 * 120.00251 * 224.32139 * 9 7 2 24 24 C 1.52997 * 117.50001 * 5.59781 * 23 9 7 25 25 C 1.52998 * 60.00313 * 252.51492 * 24 23 9 26 26 H 0.97006 * 120.00103 * 4.99220 * 1 2 3 27 27 H 1.08005 * 120.02797 * 0.02562 * 13 12 10 28 28 H 1.08001 * 119.93865 * 179.97438 * 14 13 12 29 29 H 1.09001 * 109.47425 * 179.97438 * 17 16 15 30 30 H 1.08000 * 120.06215 * 179.70812 * 22 20 15 31 31 H 1.08995 * 115.54794 * 151.31261 * 23 9 7 32 32 H 1.09007 * 117.49658 * 0.02562 * 24 23 9 33 33 H 1.08997 * 117.50026 * 145.01738 * 24 23 9 34 34 H 1.08994 * 117.49894 * 252.51197 * 25 24 23 35 35 H 1.08999 * 117.52006 * 107.47858 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3138 0.0000 0.0000 3 14 2.2478 1.6178 0.0000 4 1 3.1016 1.6963 -1.2125 5 1 1.2829 2.7465 -0.0006 6 1 3.1016 1.6964 1.2125 7 6 2.0089 -1.2040 0.0005 8 1 3.0778 -1.2104 0.1549 9 7 1.3385 -2.3816 -0.1947 10 6 0.4069 -2.4738 -1.1643 11 8 0.2201 -1.5387 -1.9192 12 6 -0.3864 -3.7088 -1.3097 13 6 0.2289 -4.9567 -1.1754 14 6 -0.5144 -6.1079 -1.3123 15 6 -1.8748 -6.0315 -1.5842 16 8 -2.6033 -7.1691 -1.7188 17 6 -1.9065 -8.4075 -1.5678 18 9 -0.8943 -8.4932 -2.5297 19 9 -1.3416 -8.4718 -0.2895 20 6 -2.4923 -4.7915 -1.7199 21 9 -3.8153 -4.7218 -1.9848 22 6 -1.7540 -3.6344 -1.5900 23 6 1.6337 -3.5414 0.6502 24 6 2.6038 -3.3378 1.8157 25 6 3.0464 -4.1248 0.5806 26 1 -0.4850 0.8369 -0.0731 27 1 1.2864 -5.0180 -0.9645 28 1 -0.0388 -7.0721 -1.2089 29 1 -2.6037 -9.2351 -1.6986 30 1 -2.2322 -2.6723 -1.7000 31 1 0.8083 -4.2377 0.7978 32 1 3.0221 -2.3407 1.9540 33 1 2.4166 -3.9000 2.7304 34 1 3.1504 -5.2050 0.6827 35 1 3.7560 -3.6460 -0.0942 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294209633.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:02 Heat of formation + Delta-G solvation = -165.491094 kcal Electronic energy + Delta-G solvation = -26690.458360 eV Core-core repulsion = 22240.150957 eV Total energy + Delta-G solvation = -4450.307403 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.31229 -50.01231 -48.29444 -41.36116 -40.29286 -38.30498 -37.71217 -34.80939 -33.01525 -31.95903 -31.42674 -27.80203 -26.67174 -24.54758 -24.17925 -23.14638 -22.65449 -21.58207 -20.21131 -19.45455 -18.96926 -18.90722 -17.99185 -17.65221 -17.26956 -16.95036 -16.80837 -16.47176 -16.20553 -15.48915 -15.41359 -15.29414 -15.04783 -14.85152 -14.70037 -14.62149 -14.59040 -14.00180 -13.82628 -13.59046 -13.24303 -13.08202 -12.83513 -12.80451 -12.53998 -12.33923 -12.22103 -12.10741 -11.62654 -11.26690 -10.78112 -10.18165 -10.11685 -9.50095 -9.04854 -8.18216 -6.06961 -0.25248 -0.05034 1.38563 1.42074 1.45282 1.50154 2.00474 2.28011 2.51497 2.58115 2.89420 3.06188 3.10593 3.36188 3.41567 3.65114 3.69306 3.75126 3.91638 4.02185 4.11548 4.20058 4.26547 4.41880 4.62452 4.79081 4.88343 4.90337 5.05528 5.16872 5.24886 5.28028 5.44953 5.49098 5.78382 6.15869 6.96706 7.12765 7.58443 8.25583 8.85619 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.019699 B = 0.004370 C = 0.003777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.060736 B = 6406.439506 C = 7411.614831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.008 3.992 3 Si 0.976 3.024 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.254 1.254 7 C -0.345 4.345 8 H 0.087 0.913 9 N -0.429 5.429 10 C 0.505 3.495 11 O -0.579 6.579 12 C -0.111 4.111 13 C -0.060 4.060 14 C -0.158 4.158 15 C 0.087 3.913 16 O -0.321 6.321 17 C 0.406 3.594 18 F -0.205 7.205 19 F -0.204 7.204 20 C 0.070 3.930 21 F -0.134 7.134 22 C -0.088 4.088 23 C 0.032 3.968 24 C -0.171 4.171 25 C -0.176 4.176 26 H 0.260 0.740 27 H 0.162 0.838 28 H 0.172 0.828 29 H 0.242 0.758 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.084 0.916 33 H 0.118 0.882 34 H 0.131 0.869 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.304 -20.194 0.840 20.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.198 4.198 3 Si 0.801 3.199 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.178 1.178 7 C -0.473 4.473 8 H 0.105 0.895 9 N -0.147 5.147 10 C 0.295 3.705 11 O -0.461 6.461 12 C -0.115 4.115 13 C -0.079 4.079 14 C -0.176 4.176 15 C 0.042 3.958 16 O -0.239 6.239 17 C 0.318 3.682 18 F -0.187 7.187 19 F -0.186 7.186 20 C 0.051 3.949 21 F -0.113 7.113 22 C -0.108 4.108 23 C -0.072 4.072 24 C -0.209 4.209 25 C -0.215 4.215 26 H 0.069 0.931 27 H 0.179 0.821 28 H 0.189 0.811 29 H 0.258 0.742 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.102 0.898 33 H 0.136 0.864 34 H 0.149 0.851 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.753 -19.611 0.507 19.695 hybrid contribution 0.053 1.509 -0.138 1.516 sum -1.700 -18.102 0.369 18.185 Atomic orbital electron populations 1.69951 1.07991 1.28053 1.44598 1.26210 0.95716 1.02954 0.94893 0.85276 0.77939 0.77667 0.79049 1.20299 1.21501 1.17794 1.19207 0.91997 0.83710 1.52386 0.89498 1.42808 1.35486 1.09779 1.26659 1.18193 0.83724 0.86555 0.82059 1.90578 1.69209 1.40843 1.45464 1.20094 0.93507 0.95025 1.02851 1.21595 1.01786 0.89352 0.95180 1.21538 0.90923 1.01097 1.04090 1.18888 0.91392 0.84808 1.00695 1.86634 1.38210 1.12819 1.86222 1.24408 0.83853 0.88402 0.71559 1.93095 1.64802 1.96052 1.64722 1.93094 1.87216 1.96189 1.42054 1.16643 0.78395 0.91261 1.08638 1.91479 1.30813 1.97044 1.91922 1.20945 0.93677 0.97325 0.98844 1.22243 0.94002 0.92325 0.98651 1.23192 1.02719 1.01888 0.93069 1.23426 0.96655 1.00771 1.00630 0.93084 0.82103 0.81122 0.74210 0.85482 0.85870 0.89756 0.86422 0.85110 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -53.31 11.24 21.68 0.24 -53.07 16 2 C 0.01 0.46 4.67 84.95 0.40 0.85 16 3 Si 0.98 44.99 29.57 68.60 2.03 47.02 16 4 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.25 -10.65 7.11 99.48 0.71 -9.94 16 7 C -0.35 -18.75 7.85 84.09 0.66 -18.09 16 8 H 0.09 4.46 7.32 -2.91 -0.02 4.44 16 9 N -0.43 -21.44 2.85 -616.73 -1.76 -23.20 16 10 C 0.51 26.82 6.44 86.69 0.56 27.38 16 11 O -0.58 -36.32 14.63 -4.10 -0.06 -36.38 16 12 C -0.11 -4.69 5.28 -20.08 -0.11 -4.80 16 13 C -0.06 -1.95 7.47 22.52 0.17 -1.78 16 14 C -0.16 -4.25 8.23 22.31 0.18 -4.06 16 15 C 0.09 2.53 6.50 22.67 0.15 2.68 16 16 O -0.32 -7.24 10.28 -90.85 -0.93 -8.17 16 17 C 0.41 5.38 5.98 113.37 0.68 6.06 16 18 F -0.20 -3.40 15.57 44.97 0.70 -2.70 16 19 F -0.20 -3.31 15.57 44.97 0.70 -2.61 16 20 C 0.07 2.45 7.30 22.41 0.16 2.62 16 21 F -0.13 -4.62 17.10 44.97 0.77 -3.85 16 22 C -0.09 -3.61 9.62 22.56 0.22 -3.39 16 23 C 0.03 1.21 4.39 44.99 0.20 1.41 16 24 C -0.17 -5.55 9.80 30.59 0.30 -5.25 16 25 C -0.18 -5.12 9.53 30.60 0.29 -4.83 16 26 H 0.26 15.47 8.32 -92.70 -0.77 14.70 16 27 H 0.16 4.66 5.54 -2.91 -0.02 4.65 16 28 H 0.17 3.58 5.07 -2.91 -0.01 3.57 16 29 H 0.24 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.13 5.73 8.06 -2.91 -0.02 5.71 16 31 H 0.12 4.23 5.87 -2.39 -0.01 4.22 16 32 H 0.08 3.16 6.79 -2.38 -0.02 3.14 16 33 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 34 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -76.61 310.71 6.71 -69.90 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 1.17 Total: 14.26 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 3.86 Total: -1.21 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -1.52 Total: -76.27 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -0.99 Total: -44.55 kcal Atomic # 9 Polarization: -11.32 SS G_CDS: 2.17 Total: -9.15 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -76.61 6.71 -69.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294209633.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.593 kcal (2) G-P(sol) polarization free energy of solvation -76.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds