Wall clock time and date at job start Tue Mar 31 2020 11:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99455 * 2 1 4 4 H 1.48503 * 109.46718 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46965 * 299.99638 * 3 2 1 6 6 H 1.48496 * 109.46986 * 59.99909 * 3 2 1 7 7 C 1.37877 * 120.00499 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47141 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.46751 * 55.00458 * 10 9 7 12 12 N 1.46499 * 109.47481 * 295.00678 * 10 9 7 13 13 C 1.34777 * 120.00199 * 154.99940 * 12 10 9 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 10 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 10 16 16 S 1.81396 * 109.46989 * 179.72353 * 15 13 12 17 17 C 1.81397 * 102.99966 * 179.97438 * 16 15 13 18 18 F 1.39901 * 109.47305 * 299.99775 * 17 16 15 19 19 F 1.39902 * 109.47340 * 59.99853 * 17 16 15 20 20 C 1.50700 * 109.47071 * 175.00009 * 10 9 7 21 21 C 1.38235 * 119.99909 * 79.73572 * 20 10 9 22 22 C 1.38235 * 120.00203 * 179.78500 * 21 20 10 23 23 C 1.38243 * 119.99736 * 0.43880 * 22 21 20 24 24 C 1.38244 * 119.99802 * 359.81374 * 23 22 21 25 25 C 1.38234 * 120.00041 * 359.97438 * 24 23 22 26 26 H 0.96993 * 120.00753 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46966 * 59.99935 * 9 7 2 28 28 H 1.08995 * 109.47763 * 300.00102 * 9 7 2 29 29 H 0.97000 * 119.99484 * 334.99037 * 12 10 9 30 30 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 31 31 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 32 32 H 1.09001 * 109.47446 * 180.02562 * 17 16 15 33 33 H 1.08003 * 119.99755 * 359.97438 * 21 20 10 34 34 H 1.07999 * 120.00430 * 180.26737 * 22 21 20 35 35 H 1.07994 * 120.00105 * 179.82908 * 23 22 21 36 36 H 1.07997 * 119.99648 * 180.02562 * 24 23 22 37 37 H 1.07994 * 119.99956 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 1 2.9295 -3.5551 0.8424 12 7 3.0066 -3.6538 -1.2512 13 6 4.2313 -4.2144 -1.2988 14 8 4.7035 -4.7252 -0.3053 15 6 5.0169 -4.2004 -2.5849 16 16 6.6152 -5.0182 -2.3260 17 6 7.4010 -4.9038 -3.9569 18 9 6.6080 -5.5609 -4.9038 19 9 7.5372 -3.5584 -4.3156 20 6 1.4961 -4.9636 0.1244 21 6 0.8899 -5.5204 -0.9862 22 6 0.2062 -6.7166 -0.8736 23 6 0.1212 -7.3514 0.3515 24 6 0.7230 -6.7919 1.4632 25 6 1.4104 -5.5979 1.3496 26 1 -0.4851 0.8399 -0.0004 27 1 0.6249 -2.5570 -0.8897 28 1 0.6242 -2.5568 0.8902 29 1 2.6291 -3.2450 -2.0457 30 1 4.4588 -4.7298 -3.3572 31 1 5.1825 -3.1697 -2.8982 32 1 8.3848 -5.3717 -3.9199 33 1 0.9529 -5.0224 -1.9425 34 1 -0.2637 -7.1539 -1.7421 35 1 -0.4152 -8.2845 0.4401 36 1 0.6569 -7.2880 2.4202 37 1 1.8809 -5.1610 2.2180 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295152787.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:18 Heat of formation + Delta-G solvation = -112.240732 kcal Electronic energy + Delta-G solvation = -23381.880333 eV Core-core repulsion = 19500.095215 eV Total energy + Delta-G solvation = -3881.785118 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.36697 -47.45479 -39.74080 -38.46408 -35.31034 -32.83816 -31.63104 -30.53014 -29.67058 -28.59322 -27.11030 -24.89637 -22.35292 -22.01113 -20.86946 -19.84678 -18.55911 -17.88901 -17.66192 -17.00276 -16.69540 -16.20637 -15.75608 -15.38330 -15.00060 -14.75786 -14.55768 -14.31544 -14.05980 -13.78993 -13.48480 -13.26556 -13.18745 -12.99762 -12.60667 -12.38135 -12.15105 -11.87631 -11.50927 -11.17812 -10.97494 -10.78414 -10.63229 -10.52752 -10.38097 -9.84650 -9.69302 -9.33909 -8.64747 -8.54644 -8.50572 -8.30559 -8.23216 -6.13910 -4.17927 0.64186 1.68653 1.75641 1.76933 2.85113 3.23357 3.32395 3.36484 3.52263 3.54225 4.14115 4.19312 4.21693 4.36029 4.88468 4.89533 5.15361 5.23025 5.23524 5.24104 5.34171 5.49664 5.86307 5.89803 6.09776 6.30513 6.38458 6.51139 6.75151 6.80776 6.82273 7.04635 7.36493 7.43020 7.53541 7.82321 7.90939 8.19666 8.51965 8.88238 9.47797 10.96507 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.008165 B = 0.005104 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3428.592543 B = 5484.531525 C = 8225.804779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.023 3.977 10 C 0.186 3.814 11 H 0.089 0.911 12 N -0.692 5.692 13 C 0.530 3.470 14 O -0.530 6.530 15 C -0.130 4.130 16 S -0.149 6.149 17 C 0.264 3.736 18 F -0.191 7.191 19 F -0.189 7.189 20 C -0.073 4.073 21 C -0.108 4.108 22 C -0.125 4.125 23 C -0.134 4.134 24 C -0.122 4.122 25 C -0.107 4.107 26 H 0.262 0.738 27 H 0.025 0.975 28 H 0.036 0.964 29 H 0.403 0.597 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.150 0.850 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.053 -12.223 -7.090 16.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.082 3.918 11 H 0.107 0.893 12 N -0.341 5.341 13 C 0.313 3.687 14 O -0.407 6.407 15 C -0.281 4.281 16 S 0.073 5.927 17 C 0.101 3.899 18 F -0.172 7.172 19 F -0.171 7.171 20 C -0.075 4.075 21 C -0.127 4.127 22 C -0.143 4.143 23 C -0.152 4.152 24 C -0.140 4.140 25 C -0.125 4.125 26 H 0.071 0.929 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.238 0.762 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.167 0.833 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.627 -12.888 -5.503 16.457 hybrid contribution -0.405 1.825 -1.674 2.510 sum 8.223 -11.063 -7.177 15.541 Atomic orbital electron populations 1.69959 1.06031 1.26795 1.50163 1.24987 0.94794 0.99269 0.95030 0.86547 0.80197 0.83698 0.77681 1.19674 1.20997 1.20922 1.21162 0.93116 0.90347 1.51423 0.92309 1.19409 0.93179 0.90056 0.98741 1.20311 0.93379 0.92173 0.85935 0.89294 1.45859 1.16201 1.57285 1.14780 1.19346 0.82129 0.79069 0.88144 1.90723 1.69013 1.45279 1.35669 1.23662 0.96191 1.05982 1.02298 1.88294 1.18110 1.76861 1.09446 1.24518 0.98154 0.77913 0.89283 1.93096 1.76235 1.80512 1.67385 1.93109 1.96613 1.34407 1.92935 1.20517 0.97019 0.96473 0.93459 1.20903 0.97674 0.95633 0.98465 1.21046 0.99889 0.95933 0.97395 1.21012 1.00935 1.00030 0.93202 1.21051 0.98480 0.96150 0.98332 1.21017 0.99063 0.95075 0.97392 0.92856 0.95646 0.94558 0.76174 0.86434 0.86065 0.83307 0.86588 0.86688 0.86785 0.86544 0.86132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.15 13.29 55.43 0.74 -24.41 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -13.49 8.84 -34.44 -0.30 -13.80 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.55 4.49 -27.88 -0.13 0.42 16 10 C 0.19 3.66 2.11 -69.08 -0.15 3.51 16 11 H 0.09 1.92 7.44 -51.93 -0.39 1.54 16 12 N -0.69 -11.82 4.04 -54.93 -0.22 -12.04 16 13 C 0.53 8.94 7.81 -10.98 -0.09 8.86 16 14 O -0.53 -10.77 15.53 5.55 0.09 -10.68 16 15 C -0.13 -1.68 6.39 36.01 0.23 -1.45 16 16 S -0.15 -1.89 21.11 -107.50 -2.27 -4.16 16 17 C 0.26 2.49 5.91 101.05 0.60 3.08 16 18 F -0.19 -2.00 17.36 2.25 0.04 -1.97 16 19 F -0.19 -2.08 17.36 2.25 0.04 -2.04 16 20 C -0.07 -1.33 4.91 -104.62 -0.51 -1.84 16 21 C -0.11 -1.77 9.32 -39.58 -0.37 -2.14 16 22 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16 23 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 24 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16 25 C -0.11 -1.82 9.67 -39.58 -0.38 -2.21 16 26 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.40 6.18 8.60 -40.82 -0.35 5.83 16 30 H 0.12 1.26 8.14 -51.92 -0.42 0.83 16 31 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 32 H 0.15 0.85 8.14 -51.92 -0.42 0.43 16 33 H 0.12 1.74 7.73 -52.48 -0.41 1.34 16 34 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 37 H 0.12 1.97 8.04 -52.49 -0.42 1.55 16 LS Contribution 347.34 15.07 5.23 5.23 Total: -1.00 -31.22 347.34 -8.26 -39.47 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -4.49 Total: 5.55 kcal Atomic # 6 Polarization: -8.28 SS G_CDS: -2.39 Total: -10.67 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.51 Total: -36.46 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.08 Total: -4.01 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: -1.89 SS G_CDS: -2.27 Total: -4.16 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.22 -8.26 -39.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295152787.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.766 kcal (2) G-P(sol) polarization free energy of solvation -31.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds