Wall clock time and date at job start Tue Mar 31 2020 11:17:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86805 * 119.99455 * 2 1
4 4 H 1.48503 * 109.46718 * 179.97438 * 3 2 1
5 5 H 1.48493 * 109.46965 * 299.99638 * 3 2 1
6 6 H 1.48496 * 109.46986 * 59.99909 * 3 2 1
7 7 C 1.37877 * 120.00499 * 179.97438 * 2 1 3
8 8 H 1.07994 * 120.00248 * 179.97438 * 7 2 1
9 9 C 1.50698 * 119.99710 * 0.02562 * 7 2 1
10 10 C 1.52999 * 109.47141 * 179.97438 * 9 7 2
11 11 H 1.09001 * 109.46751 * 55.00458 * 10 9 7
12 12 N 1.46499 * 109.47481 * 295.00678 * 10 9 7
13 13 C 1.34777 * 120.00199 * 154.99940 * 12 10 9
14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 10
15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 10
16 16 S 1.81396 * 109.46989 * 179.72353 * 15 13 12
17 17 C 1.81397 * 102.99966 * 179.97438 * 16 15 13
18 18 F 1.39901 * 109.47305 * 299.99775 * 17 16 15
19 19 F 1.39902 * 109.47340 * 59.99853 * 17 16 15
20 20 C 1.50700 * 109.47071 * 175.00009 * 10 9 7
21 21 C 1.38235 * 119.99909 * 79.73572 * 20 10 9
22 22 C 1.38235 * 120.00203 * 179.78500 * 21 20 10
23 23 C 1.38243 * 119.99736 * 0.43880 * 22 21 20
24 24 C 1.38244 * 119.99802 * 359.81374 * 23 22 21
25 25 C 1.38234 * 120.00041 * 359.97438 * 24 23 22
26 26 H 0.96993 * 120.00753 * 0.02562 * 1 2 3
27 27 H 1.09006 * 109.46966 * 59.99935 * 9 7 2
28 28 H 1.08995 * 109.47763 * 300.00102 * 9 7 2
29 29 H 0.97000 * 119.99484 * 334.99037 * 12 10 9
30 30 H 1.09004 * 109.46965 * 299.72211 * 15 13 12
31 31 H 1.08994 * 109.46990 * 59.72065 * 15 13 12
32 32 H 1.09001 * 109.47446 * 180.02562 * 17 16 15
33 33 H 1.08003 * 119.99755 * 359.97438 * 21 20 10
34 34 H 1.07999 * 120.00430 * 180.26737 * 22 21 20
35 35 H 1.07994 * 120.00105 * 179.82908 * 23 22 21
36 36 H 1.07997 * 119.99648 * 180.02562 * 24 23 22
37 37 H 1.07994 * 119.99956 * 180.02562 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2490 1.6179 0.0000
4 1 3.7091 1.3465 0.0006
5 1 1.8903 2.3964 -1.2125
6 1 1.8902 2.3965 1.2125
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1939 0.0001
9 6 1.2512 -2.4991 0.0005
10 6 2.2455 -3.6620 0.0005
11 1 2.9295 -3.5551 0.8424
12 7 3.0066 -3.6538 -1.2512
13 6 4.2313 -4.2144 -1.2988
14 8 4.7035 -4.7252 -0.3053
15 6 5.0169 -4.2004 -2.5849
16 16 6.6152 -5.0182 -2.3260
17 6 7.4010 -4.9038 -3.9569
18 9 6.6080 -5.5609 -4.9038
19 9 7.5372 -3.5584 -4.3156
20 6 1.4961 -4.9636 0.1244
21 6 0.8899 -5.5204 -0.9862
22 6 0.2062 -6.7166 -0.8736
23 6 0.1212 -7.3514 0.3515
24 6 0.7230 -6.7919 1.4632
25 6 1.4104 -5.5979 1.3496
26 1 -0.4851 0.8399 -0.0004
27 1 0.6249 -2.5570 -0.8897
28 1 0.6242 -2.5568 0.8902
29 1 2.6291 -3.2450 -2.0457
30 1 4.4588 -4.7298 -3.3572
31 1 5.1825 -3.1697 -2.8982
32 1 8.3848 -5.3717 -3.9199
33 1 0.9529 -5.0224 -1.9425
34 1 -0.2637 -7.1539 -1.7421
35 1 -0.4152 -8.2845 0.4401
36 1 0.6569 -7.2880 2.4202
37 1 1.8809 -5.1610 2.2180
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000295152787.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:17:18
Heat of formation + Delta-G solvation = -112.240732 kcal
Electronic energy + Delta-G solvation = -23381.880333 eV
Core-core repulsion = 19500.095215 eV
Total energy + Delta-G solvation = -3881.785118 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 315.085 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-49.36697 -47.45479 -39.74080 -38.46408 -35.31034 -32.83816 -31.63104 -30.53014
-29.67058 -28.59322 -27.11030 -24.89637 -22.35292 -22.01113 -20.86946 -19.84678
-18.55911 -17.88901 -17.66192 -17.00276 -16.69540 -16.20637 -15.75608 -15.38330
-15.00060 -14.75786 -14.55768 -14.31544 -14.05980 -13.78993 -13.48480 -13.26556
-13.18745 -12.99762 -12.60667 -12.38135 -12.15105 -11.87631 -11.50927 -11.17812
-10.97494 -10.78414 -10.63229 -10.52752 -10.38097 -9.84650 -9.69302 -9.33909
-8.64747 -8.54644 -8.50572 -8.30559 -8.23216 -6.13910 -4.17927 0.64186
1.68653 1.75641 1.76933 2.85113 3.23357 3.32395 3.36484 3.52263
3.54225 4.14115 4.19312 4.21693 4.36029 4.88468 4.89533 5.15361
5.23025 5.23524 5.24104 5.34171 5.49664 5.86307 5.89803 6.09776
6.30513 6.38458 6.51139 6.75151 6.80776 6.82273 7.04635 7.36493
7.43020 7.53541 7.82321 7.90939 8.19666 8.51965 8.88238 9.47797
10.96507
Molecular weight = 315.08amu
Principal moments of inertia in cm(-1)
A = 0.008165 B = 0.005104 C = 0.003403
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3428.592543 B = 5484.531525 C = 8225.804779
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.891 5.891
2 C 0.061 3.939
3 Si 0.891 3.109
4 H -0.272 1.272
5 H -0.284 1.284
6 H -0.283 1.283
7 C -0.522 4.522
8 H 0.059 0.941
9 C 0.023 3.977
10 C 0.186 3.814
11 H 0.089 0.911
12 N -0.692 5.692
13 C 0.530 3.470
14 O -0.530 6.530
15 C -0.130 4.130
16 S -0.149 6.149
17 C 0.264 3.736
18 F -0.191 7.191
19 F -0.189 7.189
20 C -0.073 4.073
21 C -0.108 4.108
22 C -0.125 4.125
23 C -0.134 4.134
24 C -0.122 4.122
25 C -0.107 4.107
26 H 0.262 0.738
27 H 0.025 0.975
28 H 0.036 0.964
29 H 0.403 0.597
30 H 0.117 0.883
31 H 0.121 0.879
32 H 0.150 0.850
33 H 0.116 0.884
34 H 0.115 0.885
35 H 0.114 0.886
36 H 0.117 0.883
37 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.053 -12.223 -7.090 16.264
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.529 5.529
2 C -0.141 4.141
3 Si 0.719 3.281
4 H -0.197 1.197
5 H -0.210 1.210
6 H -0.209 1.209
7 C -0.560 4.560
8 H 0.077 0.923
9 C -0.014 4.014
10 C 0.082 3.918
11 H 0.107 0.893
12 N -0.341 5.341
13 C 0.313 3.687
14 O -0.407 6.407
15 C -0.281 4.281
16 S 0.073 5.927
17 C 0.101 3.899
18 F -0.172 7.172
19 F -0.171 7.171
20 C -0.075 4.075
21 C -0.127 4.127
22 C -0.143 4.143
23 C -0.152 4.152
24 C -0.140 4.140
25 C -0.125 4.125
26 H 0.071 0.929
27 H 0.044 0.956
28 H 0.054 0.946
29 H 0.238 0.762
30 H 0.136 0.864
31 H 0.139 0.861
32 H 0.167 0.833
33 H 0.134 0.866
34 H 0.133 0.867
35 H 0.132 0.868
36 H 0.135 0.865
37 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges 8.627 -12.888 -5.503 16.457
hybrid contribution -0.405 1.825 -1.674 2.510
sum 8.223 -11.063 -7.177 15.541
Atomic orbital electron populations
1.69959 1.06031 1.26795 1.50163 1.24987 0.94794 0.99269 0.95030
0.86547 0.80197 0.83698 0.77681 1.19674 1.20997 1.20922 1.21162
0.93116 0.90347 1.51423 0.92309 1.19409 0.93179 0.90056 0.98741
1.20311 0.93379 0.92173 0.85935 0.89294 1.45859 1.16201 1.57285
1.14780 1.19346 0.82129 0.79069 0.88144 1.90723 1.69013 1.45279
1.35669 1.23662 0.96191 1.05982 1.02298 1.88294 1.18110 1.76861
1.09446 1.24518 0.98154 0.77913 0.89283 1.93096 1.76235 1.80512
1.67385 1.93109 1.96613 1.34407 1.92935 1.20517 0.97019 0.96473
0.93459 1.20903 0.97674 0.95633 0.98465 1.21046 0.99889 0.95933
0.97395 1.21012 1.00935 1.00030 0.93202 1.21051 0.98480 0.96150
0.98332 1.21017 0.99063 0.95075 0.97392 0.92856 0.95646 0.94558
0.76174 0.86434 0.86065 0.83307 0.86588 0.86688 0.86785 0.86544
0.86132
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -25.15 13.29 55.43 0.74 -24.41 16
2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16
3 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16
4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16
5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16
7 C -0.52 -13.49 8.84 -34.44 -0.30 -13.80 16
8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16
9 C 0.02 0.55 4.49 -27.88 -0.13 0.42 16
10 C 0.19 3.66 2.11 -69.08 -0.15 3.51 16
11 H 0.09 1.92 7.44 -51.93 -0.39 1.54 16
12 N -0.69 -11.82 4.04 -54.93 -0.22 -12.04 16
13 C 0.53 8.94 7.81 -10.98 -0.09 8.86 16
14 O -0.53 -10.77 15.53 5.55 0.09 -10.68 16
15 C -0.13 -1.68 6.39 36.01 0.23 -1.45 16
16 S -0.15 -1.89 21.11 -107.50 -2.27 -4.16 16
17 C 0.26 2.49 5.91 101.05 0.60 3.08 16
18 F -0.19 -2.00 17.36 2.25 0.04 -1.97 16
19 F -0.19 -2.08 17.36 2.25 0.04 -2.04 16
20 C -0.07 -1.33 4.91 -104.62 -0.51 -1.84 16
21 C -0.11 -1.77 9.32 -39.58 -0.37 -2.14 16
22 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16
23 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16
24 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16
25 C -0.11 -1.82 9.67 -39.58 -0.38 -2.21 16
26 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16
27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16
28 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16
29 H 0.40 6.18 8.60 -40.82 -0.35 5.83 16
30 H 0.12 1.26 8.14 -51.92 -0.42 0.83 16
31 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16
32 H 0.15 0.85 8.14 -51.92 -0.42 0.43 16
33 H 0.12 1.74 7.73 -52.48 -0.41 1.34 16
34 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16
35 H 0.11 1.27 8.06 -52.49 -0.42 0.85 16
36 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16
37 H 0.12 1.97 8.04 -52.49 -0.42 1.55 16
LS Contribution 347.34 15.07 5.23 5.23
Total: -1.00 -31.22 347.34 -8.26 -39.47
By element:
Atomic # 1 Polarization: 10.04 SS G_CDS: -4.49 Total: 5.55 kcal
Atomic # 6 Polarization: -8.28 SS G_CDS: -2.39 Total: -10.67 kcal
Atomic # 7 Polarization: -36.97 SS G_CDS: 0.51 Total: -36.46 kcal
Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal
Atomic # 9 Polarization: -4.08 SS G_CDS: 0.08 Total: -4.01 kcal
Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal
Atomic # 16 Polarization: -1.89 SS G_CDS: -2.27 Total: -4.16 kcal
Total LS contribution 5.23 Total: 5.23 kcal
Total: -31.22 -8.26 -39.47 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000295152787.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -72.766 kcal
(2) G-P(sol) polarization free energy of solvation -31.218 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.985 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.475 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.241 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds