Wall clock time and date at job start Tue Mar 31 2020 11:17:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86805 * 119.99455 * 2 1
4 4 H 1.48503 * 109.46718 * 179.97438 * 3 2 1
5 5 H 1.48493 * 109.46965 * 299.99638 * 3 2 1
6 6 H 1.48496 * 109.46986 * 59.99909 * 3 2 1
7 7 C 1.37877 * 120.00499 * 179.97438 * 2 1 3
8 8 H 1.07994 * 120.00248 * 179.97438 * 7 2 1
9 9 C 1.50698 * 119.99710 * 0.02562 * 7 2 1
10 10 C 1.52999 * 109.47141 * 179.97438 * 9 7 2
11 11 H 1.09001 * 109.46751 * 55.00458 * 10 9 7
12 12 N 1.46499 * 109.47481 * 295.00678 * 10 9 7
13 13 C 1.34777 * 120.00199 * 154.99940 * 12 10 9
14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 10
15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 10
16 16 S 1.81396 * 109.46989 * 179.72353 * 15 13 12
17 17 C 1.81397 * 102.99966 * 179.97438 * 16 15 13
18 18 F 1.39901 * 109.47305 * 299.99775 * 17 16 15
19 19 F 1.39902 * 109.47340 * 59.99853 * 17 16 15
20 20 C 1.50700 * 109.47071 * 175.00009 * 10 9 7
21 21 C 1.38235 * 119.99909 * 79.73572 * 20 10 9
22 22 C 1.38235 * 120.00203 * 179.78500 * 21 20 10
23 23 C 1.38243 * 119.99736 * 0.43880 * 22 21 20
24 24 C 1.38244 * 119.99802 * 359.81374 * 23 22 21
25 25 C 1.38234 * 120.00041 * 359.97438 * 24 23 22
26 26 H 0.96993 * 120.00753 * 0.02562 * 1 2 3
27 27 H 1.09006 * 109.46966 * 59.99935 * 9 7 2
28 28 H 1.08995 * 109.47763 * 300.00102 * 9 7 2
29 29 H 0.97000 * 119.99484 * 334.99037 * 12 10 9
30 30 H 1.09004 * 109.46965 * 299.72211 * 15 13 12
31 31 H 1.08994 * 109.46990 * 59.72065 * 15 13 12
32 32 H 1.09001 * 109.47446 * 180.02562 * 17 16 15
33 33 H 1.08003 * 119.99755 * 359.97438 * 21 20 10
34 34 H 1.07999 * 120.00430 * 180.26737 * 22 21 20
35 35 H 1.07994 * 120.00105 * 179.82908 * 23 22 21
36 36 H 1.07997 * 119.99648 * 180.02562 * 24 23 22
37 37 H 1.07994 * 119.99956 * 180.02562 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2490 1.6179 0.0000
4 1 3.7091 1.3465 0.0006
5 1 1.8903 2.3964 -1.2125
6 1 1.8902 2.3965 1.2125
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1939 0.0001
9 6 1.2512 -2.4991 0.0005
10 6 2.2455 -3.6620 0.0005
11 1 2.9295 -3.5551 0.8424
12 7 3.0066 -3.6538 -1.2512
13 6 4.2313 -4.2144 -1.2988
14 8 4.7035 -4.7252 -0.3053
15 6 5.0169 -4.2004 -2.5849
16 16 6.6152 -5.0182 -2.3260
17 6 7.4010 -4.9038 -3.9569
18 9 6.6080 -5.5609 -4.9038
19 9 7.5372 -3.5584 -4.3156
20 6 1.4961 -4.9636 0.1244
21 6 0.8899 -5.5204 -0.9862
22 6 0.2062 -6.7166 -0.8736
23 6 0.1212 -7.3514 0.3515
24 6 0.7230 -6.7919 1.4632
25 6 1.4104 -5.5979 1.3496
26 1 -0.4851 0.8399 -0.0004
27 1 0.6249 -2.5570 -0.8897
28 1 0.6242 -2.5568 0.8902
29 1 2.6291 -3.2450 -2.0457
30 1 4.4588 -4.7298 -3.3572
31 1 5.1825 -3.1697 -2.8982
32 1 8.3848 -5.3717 -3.9199
33 1 0.9529 -5.0224 -1.9425
34 1 -0.2637 -7.1539 -1.7421
35 1 -0.4152 -8.2845 0.4401
36 1 0.6569 -7.2880 2.4202
37 1 1.8809 -5.1610 2.2180
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000295152787.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:17:17
Heat of formation + Delta-G solvation = -129.795054 kcal
Electronic energy + Delta-G solvation = -23382.641545 eV
Core-core repulsion = 19500.095215 eV
Total energy + Delta-G solvation = -3882.546331 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 315.085 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-50.17263 -48.26453 -41.12921 -39.73931 -36.86332 -34.76781 -33.03595 -31.72788
-30.88724 -30.26430 -27.87580 -26.63589 -23.81962 -23.41868 -22.23370 -21.25827
-19.54005 -18.71872 -18.62067 -18.45848 -18.01142 -17.74173 -17.12335 -16.61162
-16.42951 -16.10481 -15.95330 -15.33652 -15.17106 -14.77263 -14.60749 -14.54858
-14.29660 -14.23427 -14.18457 -13.70651 -13.69275 -13.47189 -12.93957 -12.69704
-12.53097 -12.48849 -12.14402 -11.88572 -11.61759 -11.33699 -11.26696 -11.11518
-10.59879 -10.09603 -9.75949 -9.53505 -9.31277 -8.21595 -6.31782 -0.23728
0.50056 0.55761 0.74410 1.37718 1.41107 1.51826 1.52180 2.20645
2.38986 2.84044 2.96250 3.12832 3.45050 3.49102 3.66043 3.88314
3.99898 4.02901 4.13397 4.20921 4.32220 4.42826 4.63948 4.74647
4.77870 5.11419 5.19226 5.22315 5.41558 5.56831 5.60760 5.64198
5.76677 5.86647 6.14646 6.19400 6.53088 6.81330 7.17333 7.37595
8.89201
Molecular weight = 315.08amu
Principal moments of inertia in cm(-1)
A = 0.008165 B = 0.005104 C = 0.003403
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3428.592543 B = 5484.531525 C = 8225.804779
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.925 5.925
2 C 0.012 3.988
3 Si 0.955 3.045
4 H -0.269 1.269
5 H -0.276 1.276
6 H -0.283 1.283
7 C -0.529 4.529
8 H 0.054 0.946
9 C 0.037 3.963
10 C 0.202 3.798
11 H 0.060 0.940
12 N -0.689 5.689
13 C 0.528 3.472
14 O -0.568 6.568
15 C -0.120 4.120
16 S -0.196 6.196
17 C 0.282 3.718
18 F -0.194 7.194
19 F -0.196 7.196
20 C -0.100 4.100
21 C -0.121 4.121
22 C -0.124 4.124
23 C -0.129 4.129
24 C -0.124 4.124
25 C -0.132 4.132
26 H 0.264 0.736
27 H 0.015 0.985
28 H 0.005 0.995
29 H 0.412 0.588
30 H 0.143 0.857
31 H 0.135 0.865
32 H 0.195 0.805
33 H 0.123 0.877
34 H 0.147 0.853
35 H 0.151 0.849
36 H 0.143 0.857
37 H 0.112 0.888
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.611 -13.365 -8.685 18.116
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.565 5.565
2 C -0.187 4.187
3 Si 0.780 3.220
4 H -0.193 1.193
5 H -0.201 1.201
6 H -0.209 1.209
7 C -0.567 4.567
8 H 0.072 0.928
9 C 0.000 4.000
10 C 0.097 3.903
11 H 0.078 0.922
12 N -0.338 5.338
13 C 0.313 3.687
14 O -0.447 6.447
15 C -0.270 4.270
16 S 0.025 5.975
17 C 0.119 3.881
18 F -0.175 7.175
19 F -0.178 7.178
20 C -0.101 4.101
21 C -0.139 4.139
22 C -0.142 4.142
23 C -0.147 4.147
24 C -0.142 4.142
25 C -0.151 4.151
26 H 0.073 0.927
27 H 0.033 0.967
28 H 0.023 0.977
29 H 0.248 0.752
30 H 0.161 0.839
31 H 0.153 0.847
32 H 0.211 0.789
33 H 0.141 0.859
34 H 0.164 0.836
35 H 0.169 0.831
36 H 0.161 0.839
37 H 0.130 0.870
Dipole moment (debyes) X Y Z Total
from point charges 9.187 -14.027 -7.121 18.217
hybrid contribution -0.592 2.106 -1.175 2.483
sum 8.595 -11.921 -8.297 16.876
Atomic orbital electron populations
1.70066 1.07442 1.27690 1.51310 1.25756 0.95537 1.02600 0.94778
0.85552 0.78967 0.79676 0.77773 1.19293 1.20104 1.20876 1.21424
0.93022 0.91542 1.50712 0.92751 1.19144 0.93262 0.91000 0.96600
1.19759 0.92164 0.92134 0.86216 0.92197 1.45734 1.16500 1.57495
1.14113 1.19931 0.81703 0.77886 0.89184 1.90703 1.69743 1.46777
1.37510 1.23555 0.96023 1.07257 1.00204 1.88421 1.18545 1.76998
1.13502 1.24747 0.98978 0.77646 0.86720 1.93090 1.76673 1.80541
1.67244 1.93097 1.96591 1.35317 1.92760 1.20421 0.98574 0.96251
0.94827 1.21085 0.98056 0.96686 0.98121 1.21447 0.98884 0.94960
0.98931 1.21481 0.99836 1.00923 0.92416 1.21388 0.97504 0.95134
1.00147 1.21174 1.00392 0.96584 0.96958 0.92712 0.96712 0.97701
0.75169 0.83907 0.84739 0.78862 0.85908 0.83553 0.83148 0.83913
0.86962
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -53.28 13.29 21.45 0.28 -53.00 16
2 C 0.01 0.66 5.46 84.65 0.46 1.12 16
3 Si 0.95 42.90 29.54 68.60 2.03 44.93 16
4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16
5 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16
6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16
7 C -0.53 -28.12 8.84 25.60 0.23 -27.90 16
8 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16
9 C 0.04 1.83 4.49 29.85 0.13 1.96 16
10 C 0.20 8.37 2.11 44.25 0.09 8.47 16
11 H 0.06 2.79 7.44 -2.39 -0.02 2.77 16
12 N -0.69 -24.11 4.04 -446.09 -1.80 -25.91 16
13 C 0.53 18.02 7.81 87.66 0.68 18.71 16
14 O -0.57 -23.81 15.53 -3.04 -0.05 -23.86 16
15 C -0.12 -2.96 6.39 71.24 0.46 -2.51 16
16 S -0.20 -4.78 21.11 -56.49 -1.19 -5.97 16
17 C 0.28 4.55 5.91 113.37 0.67 5.22 16
18 F -0.19 -3.56 17.36 44.97 0.78 -2.78 16
19 F -0.20 -3.84 17.36 44.97 0.78 -3.06 16
20 C -0.10 -3.71 4.91 -19.87 -0.10 -3.81 16
21 C -0.12 -3.91 9.32 22.27 0.21 -3.70 16
22 C -0.12 -3.31 10.05 22.27 0.22 -3.09 16
23 C -0.13 -3.23 10.05 22.27 0.22 -3.01 16
24 C -0.12 -3.51 10.05 22.27 0.22 -3.28 16
25 C -0.13 -4.66 9.67 22.27 0.22 -4.44 16
26 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16
27 H 0.01 0.74 8.14 -2.38 -0.02 0.72 16
28 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16
29 H 0.41 12.76 8.60 -92.71 -0.80 11.96 16
30 H 0.14 2.78 8.14 -2.39 -0.02 2.76 16
31 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16
32 H 0.19 1.50 8.14 -2.39 -0.02 1.48 16
33 H 0.12 3.64 7.73 -2.91 -0.02 3.62 16
34 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16
35 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16
36 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16
37 H 0.11 3.95 8.04 -2.91 -0.02 3.93 16
Total: -1.00 -69.42 347.34 4.85 -64.57
By element:
Atomic # 1 Polarization: 21.03 SS G_CDS: 0.30 Total: 21.33 kcal
Atomic # 6 Polarization: -19.98 SS G_CDS: 3.72 Total: -16.25 kcal
Atomic # 7 Polarization: -77.39 SS G_CDS: -1.52 Total: -78.91 kcal
Atomic # 8 Polarization: -23.81 SS G_CDS: -0.05 Total: -23.86 kcal
Atomic # 9 Polarization: -7.40 SS G_CDS: 1.56 Total: -5.84 kcal
Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal
Atomic # 16 Polarization: -4.78 SS G_CDS: -1.19 Total: -5.97 kcal
Total: -69.42 4.85 -64.57 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000295152787.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -65.228 kcal
(2) G-P(sol) polarization free energy of solvation -69.418 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.646 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.851 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.567 kcal
(6) G-S(sol) free energy of system = (1) + (5) -129.795 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds