Wall clock time and date at job start Tue Mar 31 2020 11:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99455 * 2 1 4 4 H 1.48503 * 109.46718 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46965 * 299.99638 * 3 2 1 6 6 H 1.48496 * 109.46986 * 59.99909 * 3 2 1 7 7 C 1.37877 * 120.00499 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47141 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.46751 * 55.00458 * 10 9 7 12 12 N 1.46499 * 109.47481 * 295.00678 * 10 9 7 13 13 C 1.34777 * 120.00199 * 154.99940 * 12 10 9 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 10 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 10 16 16 S 1.81396 * 109.46989 * 179.72353 * 15 13 12 17 17 C 1.81397 * 102.99966 * 179.97438 * 16 15 13 18 18 F 1.39901 * 109.47305 * 299.99775 * 17 16 15 19 19 F 1.39902 * 109.47340 * 59.99853 * 17 16 15 20 20 C 1.50700 * 109.47071 * 175.00009 * 10 9 7 21 21 C 1.38235 * 119.99909 * 79.73572 * 20 10 9 22 22 C 1.38235 * 120.00203 * 179.78500 * 21 20 10 23 23 C 1.38243 * 119.99736 * 0.43880 * 22 21 20 24 24 C 1.38244 * 119.99802 * 359.81374 * 23 22 21 25 25 C 1.38234 * 120.00041 * 359.97438 * 24 23 22 26 26 H 0.96993 * 120.00753 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46966 * 59.99935 * 9 7 2 28 28 H 1.08995 * 109.47763 * 300.00102 * 9 7 2 29 29 H 0.97000 * 119.99484 * 334.99037 * 12 10 9 30 30 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 31 31 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 32 32 H 1.09001 * 109.47446 * 180.02562 * 17 16 15 33 33 H 1.08003 * 119.99755 * 359.97438 * 21 20 10 34 34 H 1.07999 * 120.00430 * 180.26737 * 22 21 20 35 35 H 1.07994 * 120.00105 * 179.82908 * 23 22 21 36 36 H 1.07997 * 119.99648 * 180.02562 * 24 23 22 37 37 H 1.07994 * 119.99956 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 1 2.9295 -3.5551 0.8424 12 7 3.0066 -3.6538 -1.2512 13 6 4.2313 -4.2144 -1.2988 14 8 4.7035 -4.7252 -0.3053 15 6 5.0169 -4.2004 -2.5849 16 16 6.6152 -5.0182 -2.3260 17 6 7.4010 -4.9038 -3.9569 18 9 6.6080 -5.5609 -4.9038 19 9 7.5372 -3.5584 -4.3156 20 6 1.4961 -4.9636 0.1244 21 6 0.8899 -5.5204 -0.9862 22 6 0.2062 -6.7166 -0.8736 23 6 0.1212 -7.3514 0.3515 24 6 0.7230 -6.7919 1.4632 25 6 1.4104 -5.5979 1.3496 26 1 -0.4851 0.8399 -0.0004 27 1 0.6249 -2.5570 -0.8897 28 1 0.6242 -2.5568 0.8902 29 1 2.6291 -3.2450 -2.0457 30 1 4.4588 -4.7298 -3.3572 31 1 5.1825 -3.1697 -2.8982 32 1 8.3848 -5.3717 -3.9199 33 1 0.9529 -5.0224 -1.9425 34 1 -0.2637 -7.1539 -1.7421 35 1 -0.4152 -8.2845 0.4401 36 1 0.6569 -7.2880 2.4202 37 1 1.8809 -5.1610 2.2180 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295152787.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:17 Heat of formation + Delta-G solvation = -129.795054 kcal Electronic energy + Delta-G solvation = -23382.641545 eV Core-core repulsion = 19500.095215 eV Total energy + Delta-G solvation = -3882.546331 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.17263 -48.26453 -41.12921 -39.73931 -36.86332 -34.76781 -33.03595 -31.72788 -30.88724 -30.26430 -27.87580 -26.63589 -23.81962 -23.41868 -22.23370 -21.25827 -19.54005 -18.71872 -18.62067 -18.45848 -18.01142 -17.74173 -17.12335 -16.61162 -16.42951 -16.10481 -15.95330 -15.33652 -15.17106 -14.77263 -14.60749 -14.54858 -14.29660 -14.23427 -14.18457 -13.70651 -13.69275 -13.47189 -12.93957 -12.69704 -12.53097 -12.48849 -12.14402 -11.88572 -11.61759 -11.33699 -11.26696 -11.11518 -10.59879 -10.09603 -9.75949 -9.53505 -9.31277 -8.21595 -6.31782 -0.23728 0.50056 0.55761 0.74410 1.37718 1.41107 1.51826 1.52180 2.20645 2.38986 2.84044 2.96250 3.12832 3.45050 3.49102 3.66043 3.88314 3.99898 4.02901 4.13397 4.20921 4.32220 4.42826 4.63948 4.74647 4.77870 5.11419 5.19226 5.22315 5.41558 5.56831 5.60760 5.64198 5.76677 5.86647 6.14646 6.19400 6.53088 6.81330 7.17333 7.37595 8.89201 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.008165 B = 0.005104 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3428.592543 B = 5484.531525 C = 8225.804779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.012 3.988 3 Si 0.955 3.045 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.283 1.283 7 C -0.529 4.529 8 H 0.054 0.946 9 C 0.037 3.963 10 C 0.202 3.798 11 H 0.060 0.940 12 N -0.689 5.689 13 C 0.528 3.472 14 O -0.568 6.568 15 C -0.120 4.120 16 S -0.196 6.196 17 C 0.282 3.718 18 F -0.194 7.194 19 F -0.196 7.196 20 C -0.100 4.100 21 C -0.121 4.121 22 C -0.124 4.124 23 C -0.129 4.129 24 C -0.124 4.124 25 C -0.132 4.132 26 H 0.264 0.736 27 H 0.015 0.985 28 H 0.005 0.995 29 H 0.412 0.588 30 H 0.143 0.857 31 H 0.135 0.865 32 H 0.195 0.805 33 H 0.123 0.877 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.143 0.857 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.611 -13.365 -8.685 18.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.209 1.209 7 C -0.567 4.567 8 H 0.072 0.928 9 C 0.000 4.000 10 C 0.097 3.903 11 H 0.078 0.922 12 N -0.338 5.338 13 C 0.313 3.687 14 O -0.447 6.447 15 C -0.270 4.270 16 S 0.025 5.975 17 C 0.119 3.881 18 F -0.175 7.175 19 F -0.178 7.178 20 C -0.101 4.101 21 C -0.139 4.139 22 C -0.142 4.142 23 C -0.147 4.147 24 C -0.142 4.142 25 C -0.151 4.151 26 H 0.073 0.927 27 H 0.033 0.967 28 H 0.023 0.977 29 H 0.248 0.752 30 H 0.161 0.839 31 H 0.153 0.847 32 H 0.211 0.789 33 H 0.141 0.859 34 H 0.164 0.836 35 H 0.169 0.831 36 H 0.161 0.839 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.187 -14.027 -7.121 18.217 hybrid contribution -0.592 2.106 -1.175 2.483 sum 8.595 -11.921 -8.297 16.876 Atomic orbital electron populations 1.70066 1.07442 1.27690 1.51310 1.25756 0.95537 1.02600 0.94778 0.85552 0.78967 0.79676 0.77773 1.19293 1.20104 1.20876 1.21424 0.93022 0.91542 1.50712 0.92751 1.19144 0.93262 0.91000 0.96600 1.19759 0.92164 0.92134 0.86216 0.92197 1.45734 1.16500 1.57495 1.14113 1.19931 0.81703 0.77886 0.89184 1.90703 1.69743 1.46777 1.37510 1.23555 0.96023 1.07257 1.00204 1.88421 1.18545 1.76998 1.13502 1.24747 0.98978 0.77646 0.86720 1.93090 1.76673 1.80541 1.67244 1.93097 1.96591 1.35317 1.92760 1.20421 0.98574 0.96251 0.94827 1.21085 0.98056 0.96686 0.98121 1.21447 0.98884 0.94960 0.98931 1.21481 0.99836 1.00923 0.92416 1.21388 0.97504 0.95134 1.00147 1.21174 1.00392 0.96584 0.96958 0.92712 0.96712 0.97701 0.75169 0.83907 0.84739 0.78862 0.85908 0.83553 0.83148 0.83913 0.86962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.28 13.29 21.45 0.28 -53.00 16 2 C 0.01 0.66 5.46 84.65 0.46 1.12 16 3 Si 0.95 42.90 29.54 68.60 2.03 44.93 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 7 C -0.53 -28.12 8.84 25.60 0.23 -27.90 16 8 H 0.05 2.89 7.74 -2.91 -0.02 2.86 16 9 C 0.04 1.83 4.49 29.85 0.13 1.96 16 10 C 0.20 8.37 2.11 44.25 0.09 8.47 16 11 H 0.06 2.79 7.44 -2.39 -0.02 2.77 16 12 N -0.69 -24.11 4.04 -446.09 -1.80 -25.91 16 13 C 0.53 18.02 7.81 87.66 0.68 18.71 16 14 O -0.57 -23.81 15.53 -3.04 -0.05 -23.86 16 15 C -0.12 -2.96 6.39 71.24 0.46 -2.51 16 16 S -0.20 -4.78 21.11 -56.49 -1.19 -5.97 16 17 C 0.28 4.55 5.91 113.37 0.67 5.22 16 18 F -0.19 -3.56 17.36 44.97 0.78 -2.78 16 19 F -0.20 -3.84 17.36 44.97 0.78 -3.06 16 20 C -0.10 -3.71 4.91 -19.87 -0.10 -3.81 16 21 C -0.12 -3.91 9.32 22.27 0.21 -3.70 16 22 C -0.12 -3.31 10.05 22.27 0.22 -3.09 16 23 C -0.13 -3.23 10.05 22.27 0.22 -3.01 16 24 C -0.12 -3.51 10.05 22.27 0.22 -3.28 16 25 C -0.13 -4.66 9.67 22.27 0.22 -4.44 16 26 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 27 H 0.01 0.74 8.14 -2.38 -0.02 0.72 16 28 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 29 H 0.41 12.76 8.60 -92.71 -0.80 11.96 16 30 H 0.14 2.78 8.14 -2.39 -0.02 2.76 16 31 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 32 H 0.19 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.12 3.64 7.73 -2.91 -0.02 3.62 16 34 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 35 H 0.15 2.68 8.06 -2.91 -0.02 2.65 16 36 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 37 H 0.11 3.95 8.04 -2.91 -0.02 3.93 16 Total: -1.00 -69.42 347.34 4.85 -64.57 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.30 Total: 21.33 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 3.72 Total: -16.25 kcal Atomic # 7 Polarization: -77.39 SS G_CDS: -1.52 Total: -78.91 kcal Atomic # 8 Polarization: -23.81 SS G_CDS: -0.05 Total: -23.86 kcal Atomic # 9 Polarization: -7.40 SS G_CDS: 1.56 Total: -5.84 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Atomic # 16 Polarization: -4.78 SS G_CDS: -1.19 Total: -5.97 kcal Total: -69.42 4.85 -64.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295152787.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.228 kcal (2) G-P(sol) polarization free energy of solvation -69.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds