Wall clock time and date at job start Tue Mar 31 2020 10:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47166 * 2 1 4 4 C 1.34955 * 116.99685 * 179.97438 * 3 2 1 5 5 O 1.21686 * 120.00300 * 359.97438 * 4 3 2 6 6 C 1.41692 * 119.99812 * 179.97438 * 4 3 2 7 7 S 1.76195 * 126.11298 * 359.97438 * 6 4 3 8 8 C 1.70919 * 90.42415 * 180.02562 * 7 6 4 9 9 S 1.76196 * 124.74366 * 179.97438 * 8 7 6 10 10 C 1.81002 * 99.99961 * 0.02636 * 9 8 7 11 11 H 1.09001 * 109.46925 * 54.99895 * 10 9 8 12 12 C 1.52997 * 109.47176 * 294.99673 * 10 9 8 13 13 C 1.53006 * 109.47089 * 174.99608 * 10 9 8 14 14 C 1.50695 * 109.47196 * 295.00312 * 13 10 9 15 15 H 1.07999 * 120.00313 * 359.97438 * 14 13 10 16 16 C 1.37883 * 120.00213 * 179.97438 * 14 13 10 17 17 N 1.31513 * 120.00271 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99419 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.47155 * 90.00283 * 18 16 14 20 20 H 1.48504 * 109.46794 * 210.00188 * 18 16 14 21 21 H 1.48498 * 109.47400 * 329.99838 * 18 16 14 22 22 N 1.30350 * 110.50836 * 0.26736 * 8 7 6 23 23 C 1.30764 * 117.27033 * 359.49762 * 22 8 7 24 24 C 1.50702 * 122.98653 * 180.24841 * 23 22 8 25 25 H 1.09001 * 109.47326 * 60.00365 * 1 2 3 26 26 H 1.09004 * 109.47114 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47557 * 300.00381 * 1 2 3 28 28 H 1.08998 * 109.47557 * 239.99619 * 2 1 3 29 29 H 1.09007 * 109.46935 * 119.99453 * 2 1 3 30 30 H 1.09002 * 109.46777 * 60.00503 * 12 10 9 31 31 H 1.09000 * 109.47140 * 179.97438 * 12 10 9 32 32 H 1.09001 * 109.47375 * 299.99947 * 12 10 9 33 33 H 1.09007 * 109.46744 * 54.99958 * 13 10 9 34 34 H 1.08995 * 109.46794 * 175.00203 * 13 10 9 35 35 H 0.96993 * 119.99786 * 180.02562 * 17 16 14 36 36 H 1.09000 * 109.47191 * 270.29284 * 24 23 22 37 37 H 1.08997 * 109.47114 * 30.29697 * 24 23 22 38 38 H 1.08998 * 109.47048 * 150.29624 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3442 1.5240 0.0005 5 8 4.0855 0.5590 0.0015 6 6 3.8859 2.8333 0.0000 7 16 2.9675 4.3370 -0.0019 8 6 4.4195 5.2387 -0.0021 9 16 4.5088 6.9983 -0.0045 10 6 2.7445 7.4026 -0.0055 11 1 2.2585 6.9103 0.8368 12 6 2.1117 6.9206 -1.3124 13 6 2.5683 8.9174 0.1182 14 6 3.0814 9.3750 1.4592 15 1 3.4917 8.6571 2.1540 16 6 3.0270 10.7101 1.7993 17 7 3.4753 11.1095 2.9694 18 14 2.3180 11.9517 0.5972 19 1 0.8578 12.0885 0.8306 20 1 2.9768 13.2674 0.7985 21 1 2.5557 11.4866 -0.7928 22 7 5.4515 4.4424 -0.0065 23 6 5.2159 3.1562 0.0004 24 6 6.3114 2.1213 0.0019 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.2372 5.8414 -1.4004 31 1 1.0491 7.1636 -1.3128 32 1 2.5977 7.4129 -2.1547 33 1 3.1286 9.4142 -0.6740 34 1 1.5115 9.1687 0.0285 35 1 3.4366 12.0487 3.2086 36 1 6.5761 1.8707 -1.0253 37 1 7.1864 2.5193 0.5158 38 1 5.9642 1.2254 0.5165 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295292840.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:53 Heat of formation + Delta-G solvation = -56.082423 kcal Electronic energy + Delta-G solvation = -21188.950454 eV Core-core repulsion = 17863.440929 eV Total energy + Delta-G solvation = -3325.509525 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.81340 -39.47018 -36.77491 -35.11129 -32.45180 -32.18706 -31.68339 -28.84551 -28.43620 -25.40569 -23.95057 -23.42489 -22.18559 -21.03020 -19.49374 -18.86138 -17.27091 -16.93057 -16.88523 -16.83524 -15.90110 -15.27367 -15.09210 -14.55809 -14.07426 -13.83365 -13.66250 -13.40688 -13.14273 -13.04447 -12.74328 -12.56169 -12.45245 -12.19989 -12.12613 -11.85811 -11.64682 -11.43461 -11.12322 -10.82168 -10.68542 -10.56167 -10.27902 -10.03464 -9.95152 -9.79872 -9.49609 -9.39419 -9.05088 -8.70258 -7.31821 -6.19223 -4.20800 -0.00973 1.03630 1.30291 1.64533 2.18465 2.61822 2.69717 2.94053 3.19366 3.28340 3.28757 4.29974 4.34829 4.68254 4.69578 4.83584 4.98345 5.02795 5.09722 5.14274 5.20631 5.48344 5.51343 5.53239 5.58522 5.64891 5.70412 5.77939 5.89777 6.07736 6.11150 6.21037 6.37367 6.77162 6.91211 7.49684 7.53339 7.64578 8.31416 8.84701 9.39651 10.93046 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.020803 B = 0.003381 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.631028 B = 8278.887631 C = 9069.101960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.354 6.354 4 C 0.557 3.443 5 O -0.509 6.509 6 C -0.357 4.357 7 S 0.217 5.783 8 C 0.033 3.967 9 S 0.095 5.905 10 C -0.094 4.094 11 H 0.099 0.901 12 C -0.160 4.160 13 C 0.006 3.994 14 C -0.534 4.534 15 H 0.082 0.918 16 C 0.075 3.925 17 N -0.891 5.891 18 Si 0.874 3.126 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.264 1.264 22 N -0.481 5.481 23 C 0.202 3.798 24 C -0.093 4.093 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.030 0.970 34 H 0.039 0.961 35 H 0.266 0.734 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.088 -18.196 -8.484 20.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.271 6.271 4 C 0.404 3.596 5 O -0.401 6.401 6 C -0.483 4.483 7 S 0.472 5.528 8 C -0.347 4.347 9 S 0.334 5.666 10 C -0.224 4.224 11 H 0.117 0.883 12 C -0.219 4.219 13 C -0.033 4.033 14 C -0.572 4.572 15 H 0.100 0.900 16 C -0.128 4.128 17 N -0.529 5.529 18 Si 0.701 3.299 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.189 1.189 22 N -0.201 5.201 23 C 0.056 3.944 24 C -0.152 4.152 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.513 -16.884 -8.357 19.164 hybrid contribution -0.760 -0.809 -0.391 1.177 sum -4.273 -17.693 -8.747 20.195 Atomic orbital electron populations 1.21817 0.92549 1.02923 1.03680 1.22624 0.95409 0.80594 1.02472 1.86208 1.23825 1.32308 1.84775 1.17975 0.80555 0.87885 0.73219 1.90826 1.59713 1.41761 1.47753 1.23522 0.97601 0.96811 1.30388 1.84221 1.08380 0.94089 1.66112 1.29983 0.95292 1.07766 1.01638 1.86555 1.11220 0.84435 1.84425 1.23956 0.92504 1.05148 1.00805 0.88303 1.22349 1.02377 1.00284 0.96937 1.19508 0.98191 0.86206 0.99374 1.21088 1.41921 0.94432 0.99766 0.89990 1.24968 0.94579 0.98296 0.94978 1.69892 1.45828 1.16454 1.20681 0.86868 0.79607 0.81186 0.82243 1.20075 1.21086 1.18867 1.66434 1.30659 1.01784 1.21200 1.21081 0.92137 0.90732 0.90472 1.20728 0.94853 0.95787 1.03796 0.91448 0.90272 0.91360 0.91470 0.91425 0.92825 0.90398 0.90890 0.95146 0.94310 0.92415 0.89781 0.90230 0.88309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.68 16 2 C 0.06 0.61 6.10 37.16 0.23 0.83 16 3 O -0.35 -4.53 9.91 -41.19 -0.41 -4.93 16 4 C 0.56 8.06 7.72 32.05 0.25 8.31 16 5 O -0.51 -7.73 13.93 -19.41 -0.27 -8.00 16 6 C -0.36 -5.40 6.32 -38.76 -0.25 -5.65 16 7 S 0.22 3.16 18.40 -107.50 -1.98 1.18 16 8 C 0.03 0.55 7.38 52.13 0.38 0.93 16 9 S 0.10 1.73 21.07 -107.50 -2.26 -0.53 16 10 C -0.09 -1.63 2.08 -26.73 -0.06 -1.69 16 11 H 0.10 1.71 7.72 -51.92 -0.40 1.31 16 12 C -0.16 -2.18 8.85 37.16 0.33 -1.85 16 13 C 0.01 0.13 3.51 -27.88 -0.10 0.03 16 14 C -0.53 -13.81 9.09 -34.44 -0.31 -14.13 16 15 H 0.08 2.31 7.84 -52.49 -0.41 1.90 16 16 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 17 N -0.89 -26.05 13.96 55.43 0.77 -25.28 16 18 Si 0.87 20.05 27.47 -169.99 -4.67 15.39 16 19 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 22 N -0.48 -8.29 10.54 -10.30 -0.11 -8.39 16 23 C 0.20 3.14 6.83 -83.54 -0.57 2.56 16 24 C -0.09 -1.17 9.67 36.01 0.35 -0.82 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 29 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 30 H 0.05 0.68 4.69 -34.88 -0.16 0.52 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 34 H 0.04 0.78 7.57 -51.93 -0.39 0.39 16 35 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 36 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.10 1.25 5.99 -51.93 -0.31 0.94 16 LS Contribution 341.91 15.07 5.15 5.15 Total: -1.00 -29.92 341.91 -8.26 -38.18 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -5.02 Total: -2.55 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 0.54 Total: -10.21 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 0.67 Total: -33.67 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -0.68 Total: -12.94 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.67 Total: 15.39 kcal Atomic # 16 Polarization: 4.89 SS G_CDS: -4.24 Total: 0.65 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.92 -8.26 -38.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295292840.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.899 kcal (2) G-P(sol) polarization free energy of solvation -29.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds