Wall clock time and date at job start Tue Mar 31 2020 10:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42902 * 109.47136 * 2 1 4 4 C 1.34954 * 117.00058 * 179.97438 * 3 2 1 5 5 O 1.21692 * 120.00017 * 0.02562 * 4 3 2 6 6 C 1.41687 * 120.00428 * 179.97438 * 4 3 2 7 7 S 1.76189 * 126.10943 * 359.97438 * 6 4 3 8 8 C 1.70915 * 90.42672 * 180.02562 * 7 6 4 9 9 S 1.76201 * 124.74808 * 179.97438 * 8 7 6 10 10 C 1.80997 * 99.99908 * 0.02974 * 9 8 7 11 11 H 1.09008 * 109.46979 * 304.99856 * 10 9 8 12 12 C 1.53001 * 109.47547 * 64.99746 * 10 9 8 13 13 C 1.52997 * 109.47052 * 185.00042 * 10 9 8 14 14 C 1.50697 * 109.47337 * 64.99795 * 13 10 9 15 15 H 1.07996 * 120.00020 * 359.97438 * 14 13 10 16 16 C 1.37878 * 119.99970 * 180.02562 * 14 13 10 17 17 N 1.31514 * 120.00275 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99796 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47324 * 59.99922 * 18 16 14 20 20 H 1.48505 * 109.46968 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47531 * 299.99637 * 18 16 14 22 22 N 1.30352 * 110.50783 * 359.97438 * 8 7 6 23 23 C 1.30770 * 117.27032 * 359.97438 * 22 8 7 24 24 C 1.50697 * 122.98844 * 179.97438 * 23 22 8 25 25 H 1.09003 * 109.47465 * 300.00101 * 1 2 3 26 26 H 1.09007 * 109.47338 * 60.00038 * 1 2 3 27 27 H 1.08996 * 109.47451 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47465 * 239.99899 * 2 1 3 29 29 H 1.09001 * 109.47162 * 119.99549 * 2 1 3 30 30 H 1.08992 * 109.47019 * 59.99643 * 12 10 9 31 31 H 1.08993 * 109.47054 * 180.02562 * 12 10 9 32 32 H 1.09004 * 109.46802 * 300.00113 * 12 10 9 33 33 H 1.09002 * 109.47372 * 184.99790 * 13 10 9 34 34 H 1.09003 * 109.46921 * 304.99397 * 13 10 9 35 35 H 0.96994 * 120.00240 * 180.02562 * 17 16 14 36 36 H 1.08999 * 109.47682 * 270.00104 * 24 23 22 37 37 H 1.08999 * 109.47238 * 30.00186 * 24 23 22 38 38 H 1.08995 * 109.47363 * 149.99988 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3442 1.5241 0.0005 5 8 4.0855 0.5591 0.0005 6 6 3.8858 2.8334 0.0000 7 16 2.9675 4.3370 -0.0019 8 6 4.4194 5.2387 -0.0021 9 16 4.5087 6.9985 -0.0045 10 6 2.7445 7.4027 -0.0054 11 1 2.2589 6.9081 -0.8467 12 6 2.1108 6.9241 1.3024 13 6 2.5683 8.9171 -0.1332 14 6 3.0821 9.3711 -1.4752 15 1 3.4936 8.6516 -2.1675 16 6 3.0279 10.7053 -1.8187 17 7 2.5273 11.5817 -0.9754 18 14 3.6654 11.2682 -3.4819 19 1 2.9030 10.5888 -4.5601 20 1 3.4943 12.7381 -3.6059 21 1 5.1052 10.9251 -3.6021 22 7 5.4515 4.4425 -0.0002 23 6 5.2159 3.1562 0.0019 24 6 6.3114 2.1214 0.0036 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.5964 7.4185 2.1436 31 1 1.0483 7.1672 1.3015 32 1 2.2363 5.8451 1.3934 33 1 1.5115 9.1688 -0.0447 34 1 3.1281 9.4160 0.6580 35 1 2.4888 12.5202 -1.2173 36 1 6.5756 1.8701 -1.0236 37 1 7.1866 2.5197 0.5169 38 1 5.9644 1.2258 0.5189 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295292843.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:55 Heat of formation + Delta-G solvation = -60.851445 kcal Electronic energy + Delta-G solvation = -21167.989768 eV Core-core repulsion = 17842.273443 eV Total energy + Delta-G solvation = -3325.716325 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.80327 -39.45581 -36.76581 -34.96382 -32.45029 -32.16141 -31.66614 -28.82835 -27.87571 -25.37947 -23.93789 -23.57323 -22.18468 -21.11311 -19.48331 -18.84493 -17.24199 -16.87430 -16.84166 -16.52810 -15.82274 -15.25271 -15.00841 -14.64124 -14.06422 -13.79064 -13.66110 -13.48411 -13.09726 -13.01971 -12.60120 -12.54798 -12.19529 -12.12716 -11.91392 -11.84656 -11.40681 -11.18783 -11.05087 -10.83263 -10.68460 -10.67699 -10.53916 -10.01330 -9.82362 -9.80353 -9.45271 -9.31804 -9.01983 -8.53151 -7.29565 -6.18463 -4.22603 0.00692 1.06360 1.35114 1.67627 2.19503 2.64047 2.75865 2.95016 3.26792 3.31229 3.34658 4.33378 4.36074 4.68812 4.70315 4.84466 4.99174 5.03331 5.19394 5.25221 5.34281 5.49040 5.51999 5.59166 5.63834 5.65379 5.71042 5.78039 6.02063 6.11557 6.28749 6.34987 6.37835 7.28601 7.32858 7.54674 7.65405 7.76920 8.09272 8.81434 9.43417 10.92147 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.019253 B = 0.003360 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.996225 B = 8332.407753 C = 8936.334195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.354 6.354 4 C 0.557 3.443 5 O -0.509 6.509 6 C -0.358 4.358 7 S 0.219 5.781 8 C 0.033 3.967 9 S 0.086 5.914 10 C -0.099 4.099 11 H 0.093 0.907 12 C -0.157 4.157 13 C 0.043 3.957 14 C -0.533 4.533 15 H 0.064 0.936 16 C 0.064 3.936 17 N -0.891 5.891 18 Si 0.893 3.107 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.273 1.273 22 N -0.483 5.483 23 C 0.201 3.799 24 C -0.093 4.093 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.032 0.968 35 H 0.265 0.735 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.077 -18.942 3.984 19.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.271 6.271 4 C 0.404 3.596 5 O -0.401 6.401 6 C -0.485 4.485 7 S 0.474 5.526 8 C -0.346 4.346 9 S 0.324 5.676 10 C -0.229 4.229 11 H 0.111 0.889 12 C -0.216 4.216 13 C 0.004 3.996 14 C -0.571 4.571 15 H 0.082 0.918 16 C -0.138 4.138 17 N -0.529 5.529 18 Si 0.721 3.279 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.199 1.199 22 N -0.202 5.202 23 C 0.055 3.945 24 C -0.151 4.151 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.576 -17.599 3.995 18.115 hybrid contribution -0.090 -1.172 -0.991 1.538 sum -1.666 -18.771 3.003 19.083 Atomic orbital electron populations 1.21817 0.92545 1.02917 1.03696 1.22622 0.95414 0.80603 1.02454 1.86210 1.23832 1.32293 1.84770 1.17981 0.80547 0.87894 0.73201 1.90826 1.59719 1.41784 1.47802 1.23529 0.97645 0.96874 1.30446 1.84263 1.08349 0.93958 1.66021 1.30029 0.95250 1.07855 1.01510 1.86527 1.12367 0.84296 1.84406 1.24199 0.91532 1.06669 1.00483 0.88857 1.22308 1.02436 0.99819 0.97066 1.19047 0.98936 0.83095 0.98510 1.21175 1.41581 0.93286 1.01053 0.91824 1.24963 0.94886 0.96692 0.97287 1.69924 1.44749 1.02574 1.35629 0.86619 0.79778 0.77540 0.83993 1.20062 1.21194 1.19863 1.66451 1.30697 1.01769 1.21305 1.21075 0.92127 0.90758 0.90542 1.20719 0.94803 0.95762 1.03847 0.91416 0.91376 0.90278 0.91453 0.91470 0.90905 0.90418 0.93196 0.93735 0.95005 0.92585 0.89755 0.90321 0.88350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.28 37.15 0.38 -0.70 16 2 C 0.06 0.61 6.10 37.15 0.23 0.84 16 3 O -0.35 -4.56 9.91 -41.19 -0.41 -4.97 16 4 C 0.56 8.11 7.72 32.05 0.25 8.36 16 5 O -0.51 -7.77 13.93 -19.41 -0.27 -8.04 16 6 C -0.36 -5.46 6.32 -38.76 -0.25 -5.71 16 7 S 0.22 3.24 18.40 -107.50 -1.98 1.26 16 8 C 0.03 0.56 7.38 52.13 0.38 0.94 16 9 S 0.09 1.57 21.06 -107.50 -2.26 -0.69 16 10 C -0.10 -1.78 2.08 -26.73 -0.06 -1.84 16 11 H 0.09 1.65 7.72 -51.91 -0.40 1.25 16 12 C -0.16 -2.30 8.86 37.16 0.33 -1.97 16 13 C 0.04 0.97 4.44 -27.89 -0.12 0.84 16 14 C -0.53 -13.64 8.53 -34.44 -0.29 -13.94 16 15 H 0.06 1.60 7.60 -52.49 -0.40 1.21 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -24.90 13.29 55.43 0.74 -24.16 16 18 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 21 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 22 N -0.48 -8.32 10.54 -10.30 -0.11 -8.43 16 23 C 0.20 3.13 6.83 -83.54 -0.57 2.56 16 24 C -0.09 -1.16 9.66 36.00 0.35 -0.82 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 29 H 0.07 0.62 8.13 -51.93 -0.42 0.19 16 30 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.67 4.69 -34.94 -0.16 0.51 16 33 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.10 1.24 6.00 -51.93 -0.31 0.92 16 LS Contribution 345.51 15.07 5.21 5.21 Total: -1.00 -28.95 345.51 -8.63 -37.59 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -5.06 Total: -3.59 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 0.53 Total: -9.80 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.63 Total: -32.59 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: -0.68 Total: -13.02 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Atomic # 16 Polarization: 4.81 SS G_CDS: -4.24 Total: 0.57 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.95 -8.63 -37.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295292843.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.266 kcal (2) G-P(sol) polarization free energy of solvation -28.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds