Wall clock time and date at job start Tue Mar 31 2020 10:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42902 * 109.47136 * 2 1 4 4 C 1.34954 * 117.00058 * 179.97438 * 3 2 1 5 5 O 1.21692 * 120.00017 * 0.02562 * 4 3 2 6 6 C 1.41687 * 120.00428 * 179.97438 * 4 3 2 7 7 S 1.76189 * 126.10943 * 359.97438 * 6 4 3 8 8 C 1.70915 * 90.42672 * 180.02562 * 7 6 4 9 9 S 1.76201 * 124.74808 * 179.97438 * 8 7 6 10 10 C 1.80997 * 99.99908 * 0.02974 * 9 8 7 11 11 H 1.09008 * 109.46979 * 304.99856 * 10 9 8 12 12 C 1.53001 * 109.47547 * 64.99746 * 10 9 8 13 13 C 1.52997 * 109.47052 * 185.00042 * 10 9 8 14 14 C 1.50697 * 109.47337 * 64.99795 * 13 10 9 15 15 H 1.07996 * 120.00020 * 359.97438 * 14 13 10 16 16 C 1.37878 * 119.99970 * 180.02562 * 14 13 10 17 17 N 1.31514 * 120.00275 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99796 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47324 * 59.99922 * 18 16 14 20 20 H 1.48505 * 109.46968 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47531 * 299.99637 * 18 16 14 22 22 N 1.30352 * 110.50783 * 359.97438 * 8 7 6 23 23 C 1.30770 * 117.27032 * 359.97438 * 22 8 7 24 24 C 1.50697 * 122.98844 * 179.97438 * 23 22 8 25 25 H 1.09003 * 109.47465 * 300.00101 * 1 2 3 26 26 H 1.09007 * 109.47338 * 60.00038 * 1 2 3 27 27 H 1.08996 * 109.47451 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47465 * 239.99899 * 2 1 3 29 29 H 1.09001 * 109.47162 * 119.99549 * 2 1 3 30 30 H 1.08992 * 109.47019 * 59.99643 * 12 10 9 31 31 H 1.08993 * 109.47054 * 180.02562 * 12 10 9 32 32 H 1.09004 * 109.46802 * 300.00113 * 12 10 9 33 33 H 1.09002 * 109.47372 * 184.99790 * 13 10 9 34 34 H 1.09003 * 109.46921 * 304.99397 * 13 10 9 35 35 H 0.96994 * 120.00240 * 180.02562 * 17 16 14 36 36 H 1.08999 * 109.47682 * 270.00104 * 24 23 22 37 37 H 1.08999 * 109.47238 * 30.00186 * 24 23 22 38 38 H 1.08995 * 109.47363 * 149.99988 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3442 1.5241 0.0005 5 8 4.0855 0.5591 0.0005 6 6 3.8858 2.8334 0.0000 7 16 2.9675 4.3370 -0.0019 8 6 4.4194 5.2387 -0.0021 9 16 4.5087 6.9985 -0.0045 10 6 2.7445 7.4027 -0.0054 11 1 2.2589 6.9081 -0.8467 12 6 2.1108 6.9241 1.3024 13 6 2.5683 8.9171 -0.1332 14 6 3.0821 9.3711 -1.4752 15 1 3.4936 8.6516 -2.1675 16 6 3.0279 10.7053 -1.8187 17 7 2.5273 11.5817 -0.9754 18 14 3.6654 11.2682 -3.4819 19 1 2.9030 10.5888 -4.5601 20 1 3.4943 12.7381 -3.6059 21 1 5.1052 10.9251 -3.6021 22 7 5.4515 4.4425 -0.0002 23 6 5.2159 3.1562 0.0019 24 6 6.3114 2.1214 0.0036 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.5964 7.4185 2.1436 31 1 1.0483 7.1672 1.3015 32 1 2.2363 5.8451 1.3934 33 1 1.5115 9.1688 -0.0447 34 1 3.1281 9.4160 0.6580 35 1 2.4888 12.5202 -1.2173 36 1 6.5756 1.8701 -1.0236 37 1 7.1866 2.5197 0.5169 38 1 5.9644 1.2258 0.5189 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295292843.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:54 Heat of formation + Delta-G solvation = -75.980195 kcal Electronic energy + Delta-G solvation = -21168.645800 eV Core-core repulsion = 17842.273443 eV Total energy + Delta-G solvation = -3326.372357 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.91310 -40.63905 -37.82297 -36.60778 -34.21585 -33.26613 -32.55800 -29.90242 -29.58893 -26.62311 -25.33803 -24.84638 -23.15622 -22.60068 -20.66435 -20.07089 -18.54675 -18.39945 -18.02681 -17.84933 -17.11023 -16.55736 -16.45997 -16.20408 -15.03692 -15.00647 -14.89605 -14.67579 -14.41827 -13.98232 -13.83033 -13.64940 -13.44859 -13.33310 -13.09518 -12.98804 -12.72110 -12.57958 -12.52821 -12.49818 -12.20949 -11.75447 -11.62777 -11.52376 -11.40226 -11.29033 -10.96190 -10.74897 -10.53486 -10.26143 -8.67749 -8.21139 -6.29832 -1.22682 -0.19407 -0.00159 0.42879 0.99108 1.35062 1.43040 1.44460 1.51545 1.66994 1.76822 2.41526 3.15122 3.18271 3.71189 3.87808 3.95221 3.96578 4.01347 4.10615 4.34706 4.35000 4.51994 4.64827 4.72263 4.76156 4.82212 4.84038 4.92125 5.05931 5.13811 5.20540 5.38362 5.41288 5.46066 5.75877 6.13714 6.31393 6.56931 6.82186 7.39151 8.89708 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.019253 B = 0.003360 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.996225 B = 8332.407753 C = 8936.334195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.557 3.443 5 O -0.517 6.517 6 C -0.362 4.362 7 S 0.266 5.734 8 C 0.018 3.982 9 S 0.044 5.956 10 C -0.086 4.086 11 H 0.097 0.903 12 C -0.151 4.151 13 C 0.048 3.952 14 C -0.540 4.540 15 H 0.064 0.936 16 C 0.013 3.987 17 N -0.926 5.926 18 Si 0.950 3.050 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.271 1.271 22 N -0.497 5.497 23 C 0.188 3.812 24 C -0.088 4.088 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.103 0.897 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.031 0.969 34 H 0.010 0.990 35 H 0.264 0.736 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.701 -20.997 3.624 21.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.404 3.596 5 O -0.410 6.410 6 C -0.489 4.489 7 S 0.521 5.479 8 C -0.361 4.361 9 S 0.281 5.719 10 C -0.216 4.216 11 H 0.115 0.885 12 C -0.210 4.210 13 C 0.010 3.990 14 C -0.578 4.578 15 H 0.082 0.918 16 C -0.186 4.186 17 N -0.565 5.565 18 Si 0.775 3.225 19 H -0.192 1.192 20 H -0.210 1.210 21 H -0.197 1.197 22 N -0.217 5.217 23 C 0.042 3.958 24 C -0.147 4.147 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.122 0.878 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.029 0.971 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.216 -19.682 3.631 20.136 hybrid contribution 0.064 -0.728 -0.854 1.124 sum -2.151 -20.409 2.776 20.709 Atomic orbital electron populations 1.21848 0.90430 1.04533 1.03625 1.22972 0.97053 0.79108 1.02875 1.86206 1.22655 1.34342 1.84287 1.17908 0.81190 0.87437 0.73078 1.90819 1.60141 1.41943 1.48112 1.23817 0.97924 0.97632 1.29481 1.84021 1.06507 0.92894 1.64457 1.29693 0.96547 1.06903 1.02933 1.86572 1.12850 0.86419 1.86099 1.23969 0.91607 1.03506 1.02532 0.88494 1.22280 1.03023 1.00540 0.95185 1.18826 0.97461 0.86231 0.96495 1.21565 1.40717 0.93351 1.02149 0.91768 1.25730 0.95365 0.97092 1.00432 1.70029 1.46403 1.02765 1.37344 0.85719 0.79225 0.77101 0.80427 1.19207 1.21029 1.19656 1.66446 1.31396 1.02555 1.21276 1.21474 0.93127 0.90598 0.90610 1.20774 0.94336 0.94918 1.04639 0.91359 0.91533 0.87829 0.91159 0.90972 0.90696 0.88885 0.91787 0.95048 0.97142 0.92671 0.88723 0.89255 0.88256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 10.28 71.98 0.74 -0.95 16 2 C 0.05 0.91 6.10 71.98 0.44 1.35 16 3 O -0.36 -8.46 9.91 -58.71 -0.58 -9.04 16 4 C 0.56 15.16 7.72 68.67 0.53 15.69 16 5 O -0.52 -14.84 13.93 19.21 0.27 -14.57 16 6 C -0.36 -10.40 6.32 22.80 0.14 -10.26 16 7 S 0.27 7.37 18.40 -56.49 -1.04 6.33 16 8 C 0.02 0.61 7.38 130.46 0.96 1.57 16 9 S 0.04 1.61 21.06 -56.49 -1.19 0.42 16 10 C -0.09 -3.08 2.08 30.59 0.06 -3.02 16 11 H 0.10 3.35 7.72 -2.39 -0.02 3.33 16 12 C -0.15 -4.23 8.86 71.98 0.64 -3.60 16 13 C 0.05 2.22 4.44 29.85 0.13 2.36 16 14 C -0.54 -27.88 8.53 25.60 0.22 -27.66 16 15 H 0.06 3.24 7.60 -2.91 -0.02 3.22 16 16 C 0.01 0.69 5.46 84.65 0.46 1.15 16 17 N -0.93 -52.60 13.29 21.45 0.28 -52.31 16 18 Si 0.95 42.47 29.54 68.60 2.03 44.49 16 19 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 N -0.50 -16.67 10.54 -186.51 -1.97 -18.63 16 23 C 0.19 5.57 6.83 42.39 0.29 5.86 16 24 C -0.09 -2.07 9.66 71.24 0.69 -1.38 16 25 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 27 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.07 1.16 8.13 -2.39 -0.02 1.14 16 29 H 0.07 1.17 8.13 -2.39 -0.02 1.15 16 30 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.06 1.60 4.69 -13.18 -0.06 1.54 16 33 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 36 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 38 H 0.10 2.33 6.00 -2.39 -0.01 2.31 16 Total: -1.00 -61.51 345.51 4.13 -57.38 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: 1.02 Total: 4.82 kcal Atomic # 6 Polarization: -24.19 SS G_CDS: 5.31 Total: -18.88 kcal Atomic # 7 Polarization: -69.27 SS G_CDS: -1.68 Total: -70.95 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.31 Total: -23.62 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 16 Polarization: 8.98 SS G_CDS: -2.23 Total: 6.75 kcal Total: -61.51 4.13 -57.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295292843.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.599 kcal (2) G-P(sol) polarization free energy of solvation -61.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds