Wall clock time and date at job start Tue Mar 31 2020 10:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.46941 * 2 1 4 4 C 1.34958 * 116.99737 * 180.02562 * 3 2 1 5 5 O 1.21690 * 120.00327 * 359.97438 * 4 3 2 6 6 C 1.41685 * 120.00031 * 180.02562 * 4 3 2 7 7 S 1.76195 * 126.11337 * 359.97438 * 6 4 3 8 8 C 1.70921 * 90.42365 * 180.02562 * 7 6 4 9 9 S 1.76198 * 124.74154 * 179.97438 * 8 7 6 10 10 C 1.80993 * 100.00330 * 0.02562 * 9 8 7 11 11 C 1.52998 * 109.47648 * 180.02562 * 10 9 8 12 12 C 1.52998 * 109.47788 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47425 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00016 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99874 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99821 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99589 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47197 * 89.99846 * 17 15 13 19 19 H 1.48504 * 109.46786 * 209.99749 * 17 15 13 20 20 H 1.48494 * 109.47513 * 329.99873 * 17 15 13 21 21 N 1.30344 * 110.51188 * 0.02562 * 8 7 6 22 22 C 1.30764 * 117.27394 * 359.97438 * 21 8 7 23 23 C 1.50699 * 122.99366 * 179.73604 * 22 21 8 24 24 H 1.08999 * 109.47545 * 300.00298 * 1 2 3 25 25 H 1.08999 * 109.47075 * 60.00001 * 1 2 3 26 26 H 1.08998 * 109.47569 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46921 * 240.00074 * 2 1 3 28 28 H 1.08999 * 109.47075 * 119.99999 * 2 1 3 29 29 H 1.08999 * 109.47519 * 300.00189 * 10 9 8 30 30 H 1.09005 * 109.47263 * 59.99565 * 10 9 8 31 31 H 1.09007 * 109.46644 * 300.00336 * 11 10 9 32 32 H 1.09005 * 109.47158 * 59.99484 * 11 10 9 33 33 H 1.09004 * 109.46555 * 299.99761 * 12 11 10 34 34 H 1.09001 * 109.46954 * 59.99362 * 12 11 10 35 35 H 0.97005 * 119.99277 * 179.97438 * 16 15 13 36 36 H 1.08994 * 109.47628 * 90.02495 * 23 22 21 37 37 H 1.09004 * 109.47103 * 210.02543 * 23 22 21 38 38 H 1.08998 * 109.46925 * 330.02175 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3442 1.5241 -0.0005 5 8 4.0856 0.5591 -0.0005 6 6 3.8858 2.8334 0.0000 7 16 2.9674 4.3371 0.0007 8 6 4.4195 5.2387 0.0002 9 16 4.5087 6.9984 -0.0002 10 6 2.7445 7.4027 0.0009 11 6 2.5695 8.9226 0.0001 12 6 1.0782 9.2644 0.0017 13 6 0.9059 10.7615 0.0016 14 1 1.7733 11.4049 0.0001 15 6 -0.3592 11.3098 0.0023 16 7 -1.4154 10.5263 0.0026 17 14 -0.5727 13.1655 0.0014 18 1 -0.6304 13.6565 -1.3989 19 1 -1.8333 13.5190 0.7023 20 1 0.5757 13.7964 0.7001 21 7 5.4515 4.4425 -0.0010 22 6 5.2160 3.1563 -0.0010 23 6 6.3114 2.1214 -0.0081 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.2750 6.9829 -0.8886 30 1 2.2761 6.9831 0.8913 31 1 3.0392 9.3429 0.8896 32 1 3.0378 9.3419 -0.8904 33 1 0.6083 8.8441 -0.8875 34 1 0.6103 8.8452 0.8925 35 1 -2.3054 10.9121 0.0035 36 1 6.5809 1.8705 1.0177 37 1 5.9617 1.2256 -0.5214 38 1 7.1840 2.5196 -0.5260 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295924865.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:51 Heat of formation + Delta-G solvation = -65.506340 kcal Electronic energy + Delta-G solvation = -20452.577914 eV Core-core repulsion = 17126.659738 eV Total energy + Delta-G solvation = -3325.918176 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.99389 -39.70998 -36.92399 -34.73093 -32.44953 -32.21444 -31.84195 -29.03721 -27.88468 -25.79072 -24.11429 -23.51700 -22.28391 -20.72322 -19.71350 -19.09631 -17.49196 -17.08556 -16.99977 -16.40747 -15.92599 -15.49918 -14.86670 -14.85238 -14.41296 -14.15577 -13.81863 -13.70105 -13.18059 -12.93019 -12.78193 -12.69378 -12.27672 -12.05924 -12.01048 -11.92195 -11.53828 -11.35527 -10.97740 -10.84537 -10.77250 -10.68422 -10.50716 -10.09331 -10.00716 -9.83349 -9.52748 -9.42700 -9.25156 -8.46439 -7.75451 -6.11275 -4.14659 -0.26151 0.73866 0.94360 1.36026 1.95888 2.26997 2.50664 2.71826 3.26340 3.33173 3.36194 4.09342 4.37319 4.57901 4.63612 4.67787 4.82587 4.96649 5.06657 5.17822 5.25540 5.38321 5.40882 5.44680 5.48221 5.57575 5.68998 5.73637 5.94797 6.23007 6.25313 6.41259 6.77949 7.25179 7.48182 7.49329 7.58730 7.86039 8.25732 8.91274 9.50422 10.99868 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.016971 B = 0.002757 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.470257 B =10154.904437 C =11762.717974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.352 6.352 4 C 0.555 3.445 5 O -0.504 6.504 6 C -0.338 4.338 7 S 0.233 5.767 8 C 0.034 3.966 9 S 0.033 5.967 10 C -0.131 4.131 11 C -0.094 4.094 12 C 0.029 3.971 13 C -0.525 4.525 14 H 0.057 0.943 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.894 3.106 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 N -0.475 5.475 22 C 0.198 3.802 23 C -0.093 4.093 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.021 0.979 34 H 0.021 0.979 35 H 0.262 0.738 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.265 -19.573 -0.032 21.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.269 6.269 4 C 0.402 3.598 5 O -0.395 6.395 6 C -0.465 4.465 7 S 0.488 5.512 8 C -0.346 4.346 9 S 0.271 5.729 10 C -0.280 4.280 11 C -0.134 4.134 12 C -0.010 4.010 13 C -0.563 4.563 14 H 0.076 0.924 15 C -0.143 4.143 16 N -0.532 5.532 17 Si 0.722 3.278 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.198 1.198 21 N -0.195 5.195 22 C 0.052 3.948 23 C -0.152 4.152 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.072 0.928 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 8.617 -18.462 -0.030 20.374 hybrid contribution -0.649 -0.641 0.016 0.912 sum 7.968 -19.103 -0.014 20.698 Atomic orbital electron populations 1.21828 0.92343 1.03047 1.03854 1.22665 0.95577 0.80271 1.02541 1.86216 1.23504 1.32644 1.84560 1.17939 0.80790 0.87758 0.73361 1.90843 1.59755 1.41609 1.47321 1.23507 0.97311 0.96567 1.29083 1.84379 1.07294 0.94320 1.65183 1.29463 0.95843 1.06564 1.02701 1.86031 1.12605 0.87293 1.86996 1.24375 0.91875 1.05271 1.06511 1.21528 1.02604 0.86976 1.02252 1.19112 0.87241 0.96860 0.97807 1.21166 0.92249 0.91568 1.51315 0.92427 1.25010 0.96020 0.98213 0.95065 1.69952 0.98054 1.34885 1.50344 0.86560 0.77643 0.85432 0.78194 1.20577 1.21161 1.19791 1.66423 1.30722 1.01914 1.20407 1.21102 0.92215 0.90629 0.90861 1.20747 0.94696 0.95705 1.04030 0.91294 0.91300 0.90160 0.91344 0.91341 0.88631 0.88627 0.91686 0.91684 0.96099 0.96090 0.92831 0.89564 0.88148 0.90147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.66 16 2 C 0.06 0.57 6.10 37.16 0.23 0.80 16 3 O -0.35 -4.20 9.91 -41.20 -0.41 -4.61 16 4 C 0.56 7.31 7.72 32.05 0.25 7.55 16 5 O -0.50 -6.99 13.93 -19.41 -0.27 -7.26 16 6 C -0.34 -4.54 6.32 -38.76 -0.25 -4.79 16 7 S 0.23 3.02 21.27 -107.50 -2.29 0.73 16 8 C 0.03 0.49 7.59 52.13 0.40 0.88 16 9 S 0.03 0.47 22.31 -107.50 -2.40 -1.93 16 10 C -0.13 -1.94 4.62 37.16 0.17 -1.77 16 11 C -0.09 -1.70 5.16 -26.73 -0.14 -1.84 16 12 C 0.03 0.68 4.97 -27.89 -0.14 0.54 16 13 C -0.52 -13.97 9.11 -34.44 -0.31 -14.29 16 14 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.89 -25.65 13.29 55.43 0.74 -24.92 16 17 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 21 N -0.48 -6.98 10.54 -10.30 -0.11 -7.09 16 22 C 0.20 2.66 6.83 -83.54 -0.57 2.09 16 23 C -0.09 -0.99 9.67 36.01 0.35 -0.64 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 28 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 29 H 0.10 1.35 7.96 -51.92 -0.41 0.94 16 30 H 0.10 1.35 7.96 -51.91 -0.41 0.94 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 1.09 5.99 -51.93 -0.31 0.78 16 38 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 353.43 15.07 5.33 5.33 Total: -1.00 -29.85 353.43 -9.49 -39.34 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: -5.33 Total: -4.79 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 0.27 Total: -10.61 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 0.63 Total: -32.01 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -0.68 Total: -11.87 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -4.68 Total: -1.20 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.85 -9.49 -39.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295924865.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.163 kcal (2) G-P(sol) polarization free energy of solvation -29.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds