Wall clock time and date at job start Tue Mar 31 2020 10:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.46941 * 2 1 4 4 C 1.34958 * 116.99737 * 180.02562 * 3 2 1 5 5 O 1.21690 * 120.00327 * 359.97438 * 4 3 2 6 6 C 1.41685 * 120.00031 * 180.02562 * 4 3 2 7 7 S 1.76195 * 126.11337 * 359.97438 * 6 4 3 8 8 C 1.70921 * 90.42365 * 180.02562 * 7 6 4 9 9 S 1.76198 * 124.74154 * 179.97438 * 8 7 6 10 10 C 1.80993 * 100.00330 * 0.02562 * 9 8 7 11 11 C 1.52998 * 109.47648 * 180.02562 * 10 9 8 12 12 C 1.52998 * 109.47788 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47425 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00016 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99874 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99821 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99589 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47197 * 89.99846 * 17 15 13 19 19 H 1.48504 * 109.46786 * 209.99749 * 17 15 13 20 20 H 1.48494 * 109.47513 * 329.99873 * 17 15 13 21 21 N 1.30344 * 110.51188 * 0.02562 * 8 7 6 22 22 C 1.30764 * 117.27394 * 359.97438 * 21 8 7 23 23 C 1.50699 * 122.99366 * 179.73604 * 22 21 8 24 24 H 1.08999 * 109.47545 * 300.00298 * 1 2 3 25 25 H 1.08999 * 109.47075 * 60.00001 * 1 2 3 26 26 H 1.08998 * 109.47569 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46921 * 240.00074 * 2 1 3 28 28 H 1.08999 * 109.47075 * 119.99999 * 2 1 3 29 29 H 1.08999 * 109.47519 * 300.00189 * 10 9 8 30 30 H 1.09005 * 109.47263 * 59.99565 * 10 9 8 31 31 H 1.09007 * 109.46644 * 300.00336 * 11 10 9 32 32 H 1.09005 * 109.47158 * 59.99484 * 11 10 9 33 33 H 1.09004 * 109.46555 * 299.99761 * 12 11 10 34 34 H 1.09001 * 109.46954 * 59.99362 * 12 11 10 35 35 H 0.97005 * 119.99277 * 179.97438 * 16 15 13 36 36 H 1.08994 * 109.47628 * 90.02495 * 23 22 21 37 37 H 1.09004 * 109.47103 * 210.02543 * 23 22 21 38 38 H 1.08998 * 109.46925 * 330.02175 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3442 1.5241 -0.0005 5 8 4.0856 0.5591 -0.0005 6 6 3.8858 2.8334 0.0000 7 16 2.9674 4.3371 0.0007 8 6 4.4195 5.2387 0.0002 9 16 4.5087 6.9984 -0.0002 10 6 2.7445 7.4027 0.0009 11 6 2.5695 8.9226 0.0001 12 6 1.0782 9.2644 0.0017 13 6 0.9059 10.7615 0.0016 14 1 1.7733 11.4049 0.0001 15 6 -0.3592 11.3098 0.0023 16 7 -1.4154 10.5263 0.0026 17 14 -0.5727 13.1655 0.0014 18 1 -0.6304 13.6565 -1.3989 19 1 -1.8333 13.5190 0.7023 20 1 0.5757 13.7964 0.7001 21 7 5.4515 4.4425 -0.0010 22 6 5.2160 3.1563 -0.0010 23 6 6.3114 2.1214 -0.0081 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.2750 6.9829 -0.8886 30 1 2.2761 6.9831 0.8913 31 1 3.0392 9.3429 0.8896 32 1 3.0378 9.3419 -0.8904 33 1 0.6083 8.8441 -0.8875 34 1 0.6103 8.8452 0.8925 35 1 -2.3054 10.9121 0.0035 36 1 6.5809 1.8705 1.0177 37 1 5.9617 1.2256 -0.5214 38 1 7.1840 2.5196 -0.5260 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295924865.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:50 Heat of formation + Delta-G solvation = -80.882157 kcal Electronic energy + Delta-G solvation = -20453.244659 eV Core-core repulsion = 17126.659738 eV Total energy + Delta-G solvation = -3326.584922 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.97777 -40.72172 -37.87584 -36.42707 -34.11081 -33.36611 -32.59999 -29.95648 -29.60938 -26.94069 -25.35605 -24.82876 -23.14691 -22.29757 -20.74915 -20.15703 -18.63130 -18.37499 -18.02347 -17.89939 -16.98685 -16.60427 -16.55944 -16.09524 -15.75361 -15.02170 -14.78606 -14.73998 -14.47566 -13.98095 -13.92059 -13.70887 -13.53062 -13.43900 -13.02570 -12.97619 -12.76486 -12.61951 -12.47120 -12.40256 -12.11242 -11.69970 -11.66630 -11.55308 -11.34138 -11.17623 -11.12446 -10.89737 -10.53441 -10.47049 -8.84357 -8.18978 -6.28897 -1.31595 -0.32440 -0.18455 0.31037 0.91451 1.11509 1.43518 1.44004 1.54710 1.62081 1.69358 2.42963 3.09611 3.15723 3.63186 3.84486 3.85155 3.89208 3.99029 4.06482 4.32426 4.42567 4.46490 4.63294 4.69546 4.74749 4.80539 4.87487 4.89574 5.03266 5.12837 5.18585 5.38563 5.51943 5.69605 5.84732 6.20119 6.23600 6.51372 6.87388 7.40432 8.92492 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.016971 B = 0.002757 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.470257 B =10154.904437 C =11762.717974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 O -0.359 6.359 4 C 0.555 3.445 5 O -0.514 6.514 6 C -0.347 4.347 7 S 0.254 5.746 8 C 0.020 3.980 9 S 0.050 5.950 10 C -0.128 4.128 11 C -0.082 4.082 12 C 0.030 3.970 13 C -0.542 4.542 14 H 0.062 0.938 15 C 0.003 3.997 16 N -0.930 5.930 17 Si 0.960 3.040 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.264 1.264 21 N -0.489 5.489 22 C 0.190 3.810 23 C -0.089 4.089 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.104 0.896 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.001 0.999 34 H 0.002 0.998 35 H 0.263 0.737 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.887 -19.821 -0.006 21.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.019 4.019 3 O -0.276 6.276 4 C 0.401 3.599 5 O -0.406 6.406 6 C -0.474 4.474 7 S 0.509 5.491 8 C -0.359 4.359 9 S 0.287 5.713 10 C -0.278 4.278 11 C -0.121 4.121 12 C -0.009 4.009 13 C -0.581 4.581 14 H 0.080 0.920 15 C -0.195 4.195 16 N -0.570 5.570 17 Si 0.785 3.215 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.188 1.188 21 N -0.209 5.209 22 C 0.044 3.956 23 C -0.148 4.148 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.122 0.878 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.020 0.980 34 H 0.020 0.980 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.242 -18.712 -0.005 20.870 hybrid contribution -0.846 -0.680 0.007 1.085 sum 8.396 -19.392 0.002 21.132 Atomic orbital electron populations 1.21856 0.90638 1.04551 1.03546 1.22971 0.96907 0.79010 1.03001 1.86217 1.22737 1.34461 1.84216 1.17932 0.81213 0.87522 0.73186 1.90830 1.60091 1.41848 1.47875 1.23692 0.97611 0.96975 1.29075 1.84286 1.06408 0.93896 1.64540 1.29483 0.96498 1.06621 1.03347 1.85914 1.10700 0.87388 1.87328 1.24144 0.93342 1.03017 1.07270 1.21206 0.98779 0.89448 1.02657 1.18987 0.90755 0.95303 0.95860 1.21663 0.92496 0.93367 1.50545 0.91961 1.25888 0.95881 1.02920 0.94833 1.70071 0.98502 1.36876 1.51600 0.85523 0.77719 0.79880 0.78402 1.19946 1.21000 1.18797 1.66443 1.31145 1.02464 1.20803 1.21494 0.92949 0.90683 0.90438 1.20801 0.94285 0.94829 1.04849 0.91578 0.91580 0.87751 0.90890 0.90900 0.87999 0.87996 0.91281 0.91257 0.98021 0.98010 0.92783 0.88430 0.88387 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.28 71.98 0.74 -1.06 16 2 C 0.05 0.92 6.10 71.98 0.44 1.35 16 3 O -0.36 -8.26 9.91 -58.75 -0.58 -8.85 16 4 C 0.55 14.14 7.72 68.67 0.53 14.67 16 5 O -0.51 -13.79 13.93 19.21 0.27 -13.52 16 6 C -0.35 -9.01 6.32 22.80 0.14 -8.87 16 7 S 0.25 6.34 21.27 -56.49 -1.20 5.14 16 8 C 0.02 0.55 7.59 130.46 0.99 1.54 16 9 S 0.05 1.34 22.31 -56.49 -1.26 0.08 16 10 C -0.13 -3.68 4.62 71.98 0.33 -3.35 16 11 C -0.08 -2.90 5.16 30.59 0.16 -2.74 16 12 C 0.03 1.43 4.97 29.85 0.15 1.58 16 13 C -0.54 -28.94 9.11 25.60 0.23 -28.71 16 14 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 15 C 0.00 0.16 5.46 84.66 0.46 0.63 16 16 N -0.93 -54.09 13.29 21.45 0.28 -53.80 16 17 Si 0.96 42.53 29.54 68.60 2.03 44.56 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 20 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 21 N -0.49 -13.79 10.54 -186.50 -1.96 -15.76 16 22 C 0.19 4.89 6.83 42.40 0.29 5.18 16 23 C -0.09 -1.78 9.67 71.24 0.69 -1.09 16 24 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 28 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 29 H 0.10 2.79 7.96 -2.40 -0.02 2.77 16 30 H 0.10 2.79 7.96 -2.39 -0.02 2.78 16 31 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 32 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 33 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.26 14.46 8.31 -92.70 -0.77 13.69 16 36 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.10 2.03 5.99 -2.38 -0.01 2.01 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -62.90 353.43 3.79 -59.11 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: 1.06 Total: 3.91 kcal Atomic # 6 Polarization: -26.03 SS G_CDS: 5.16 Total: -20.87 kcal Atomic # 7 Polarization: -67.88 SS G_CDS: -1.68 Total: -69.56 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.31 Total: -22.37 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 16 Polarization: 7.67 SS G_CDS: -2.46 Total: 5.21 kcal Total: -62.90 3.79 -59.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295924865.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.771 kcal (2) G-P(sol) polarization free energy of solvation -62.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds