Wall clock time and date at job start Tue Mar 31 2020 11:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.38848 * 121.34561 * 194.68592 * 3 2 1 5 5 C 1.40017 * 119.42967 * 180.02562 * 4 3 2 6 6 N 1.38765 * 118.82217 * 180.02562 * 5 4 3 7 7 C 1.46505 * 119.99920 * 0.02562 * 6 5 4 8 8 C 1.53000 * 109.47021 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.46779 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.46446 * 179.97438 * 9 8 7 11 11 H 1.07992 * 120.00286 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99335 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00344 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99879 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47155 * 90.00049 * 14 12 10 16 16 H 1.48502 * 109.47161 * 210.00368 * 14 12 10 17 17 H 1.48500 * 109.46940 * 330.00275 * 14 12 10 18 18 N 1.31476 * 122.35278 * 359.95449 * 5 4 3 19 19 C 1.33652 * 122.34020 * 0.07378 * 18 5 4 20 20 C 1.40605 * 121.06868 * 179.97438 * 19 18 5 21 21 C 1.36137 * 119.74548 * 180.02562 * 20 19 18 22 22 C 1.39371 * 121.05453 * 359.97438 * 21 20 19 23 23 Cl 1.73597 * 119.61839 * 180.02562 * 22 21 20 24 24 C 1.36475 * 120.76323 * 0.02562 * 22 21 20 25 25 C 1.39867 * 119.58408 * 0.02562 * 24 22 21 26 26 H 1.08001 * 120.28527 * 0.05390 * 4 3 2 27 27 H 0.96995 * 120.00210 * 179.97438 * 6 5 4 28 28 H 1.09007 * 109.47015 * 300.00021 * 7 6 5 29 29 H 1.09001 * 109.47101 * 59.99715 * 7 6 5 30 30 H 1.08999 * 109.46846 * 299.99182 * 8 7 6 31 31 H 1.08996 * 109.47134 * 59.99941 * 8 7 6 32 32 H 1.08999 * 109.46814 * 299.99264 * 9 8 7 33 33 H 1.08996 * 109.47285 * 60.00096 * 9 8 7 34 34 H 0.97006 * 119.99750 * 179.97438 * 13 12 10 35 35 H 1.07997 * 120.12858 * 0.02562 * 20 19 18 36 36 H 1.07996 * 119.46832 * 180.02562 * 21 20 19 37 37 H 1.08005 * 120.20301 * 179.73116 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2898 1.1480 0.3006 5 6 4.6892 1.1035 0.2882 6 7 5.3979 2.2574 0.5911 7 6 4.6812 3.4930 0.9168 8 6 5.6899 4.6060 1.2080 9 6 4.9413 5.8965 1.5475 10 6 5.9349 6.9926 1.8349 11 1 6.9941 6.7890 1.7813 12 6 5.4915 8.2554 2.1664 13 7 4.2015 8.5032 2.2322 14 14 6.7229 9.6139 2.5234 15 1 7.0495 10.3295 1.2638 16 1 6.1373 10.5692 3.4980 17 1 7.9608 9.0229 3.0922 18 7 5.3557 0.0072 0.0012 19 6 4.7448 -1.1426 -0.3006 20 6 5.4844 -2.2993 -0.6040 21 6 4.8343 -3.4561 -0.9082 22 6 3.4420 -3.5156 -0.9241 23 17 2.6516 -5.0106 -1.3166 24 6 2.6928 -2.4123 -0.6347 25 6 3.3304 -1.2080 -0.3192 26 1 2.7762 2.0669 0.5424 27 1 6.3678 2.2458 0.5880 28 1 4.0545 3.7827 0.0732 29 1 4.0561 3.3298 1.7947 30 1 6.3167 4.3166 2.0514 31 1 6.3146 4.7690 0.3299 32 1 4.3147 6.1857 0.7038 33 1 4.3163 5.7338 2.4255 34 1 3.8896 9.3915 2.4658 35 1 6.5639 -2.2702 -0.5957 36 1 5.4068 -4.3420 -1.1401 37 1 1.6143 -2.4675 -0.6540 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000301291000.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:20 Heat of formation + Delta-G solvation = 67.749357 kcal Electronic energy + Delta-G solvation = -21434.490865 eV Core-core repulsion = 18009.156182 eV Total energy + Delta-G solvation = -3425.334682 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.083 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.08332 -38.42982 -37.20250 -36.80514 -35.59488 -33.69799 -33.50388 -31.58009 -30.66859 -29.34067 -26.61624 -25.34735 -23.87521 -23.19425 -22.41727 -20.67799 -19.33458 -18.18239 -18.07409 -16.48758 -16.16818 -15.66312 -15.51705 -15.46334 -14.70397 -14.65749 -14.53931 -14.30030 -13.99832 -13.82364 -13.38734 -13.34435 -13.03179 -12.47984 -12.30909 -12.26921 -12.11284 -11.93871 -11.38999 -11.25718 -10.96558 -10.88474 -10.68267 -10.65822 -10.04744 -9.84208 -9.63015 -9.60655 -9.24848 -8.90783 -8.46441 -7.74078 -6.11403 -4.14605 -0.27149 0.52565 1.22622 1.79416 2.18115 2.47722 2.86992 2.93645 3.25418 3.29303 3.32477 3.35141 3.79904 4.07415 4.26424 4.36512 4.38622 4.58002 4.80082 4.85346 4.99915 5.21044 5.25037 5.31874 5.45273 5.48935 5.54688 5.74195 5.83940 5.85459 5.90879 6.26849 6.37842 6.41585 6.78984 6.85108 7.01302 7.41812 7.50067 7.60808 7.86093 7.91582 8.27148 8.91718 9.50496 10.99744 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.029280 B = 0.002145 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.057553 B =13048.381477 C =13978.689376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C 0.253 3.747 3 C 0.063 3.937 4 C -0.139 4.139 5 C 0.441 3.559 6 N -0.702 5.702 7 C 0.112 3.888 8 C -0.121 4.121 9 C 0.024 3.976 10 C -0.524 4.524 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.280 1.280 16 H -0.286 1.286 17 H -0.274 1.274 18 N -0.545 5.545 19 C 0.198 3.802 20 C -0.092 4.092 21 C -0.082 4.082 22 C -0.052 4.052 23 Cl -0.072 7.072 24 C -0.068 4.068 25 C -0.118 4.118 26 H 0.155 0.845 27 H 0.411 0.589 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.262 0.738 35 H 0.147 0.853 36 H 0.139 0.861 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.068 -24.173 -6.347 24.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.063 5.063 2 C -0.063 4.063 3 C 0.053 3.947 4 C -0.166 4.166 5 C 0.190 3.810 6 N -0.332 5.332 7 C -0.011 4.011 8 C -0.159 4.159 9 C -0.013 4.013 10 C -0.562 4.562 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.721 3.279 15 H -0.206 1.206 16 H -0.212 1.212 17 H -0.198 1.198 18 N -0.267 5.267 19 C 0.075 3.925 20 C -0.112 4.112 21 C -0.102 4.102 22 C -0.080 4.080 23 Cl -0.043 7.043 24 C -0.087 4.087 25 C -0.125 4.125 26 H 0.173 0.827 27 H 0.248 0.752 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.071 0.929 35 H 0.165 0.835 36 H 0.157 0.843 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.125 -23.995 -6.295 24.832 hybrid contribution 0.375 0.779 0.193 0.886 sum -0.750 -23.216 -6.102 24.016 Atomic orbital electron populations 1.81304 1.11456 1.06592 1.06914 1.25187 0.92086 0.94326 0.94663 1.16834 0.84456 0.93555 0.99881 1.21956 0.93597 0.98889 1.02149 1.18260 0.87315 0.87081 0.88343 1.45121 1.09757 1.06935 1.71388 1.21940 0.96523 0.82410 1.00224 1.21883 0.97633 0.95279 1.01082 1.19038 0.95625 0.89597 0.97074 1.21176 0.93027 0.94748 1.47277 0.92557 1.25024 0.95202 0.98806 0.95392 1.69952 1.13006 1.21829 1.48480 0.86574 0.81339 0.81800 0.78176 1.20609 1.21182 1.19838 1.67142 1.39135 0.98062 1.22323 1.18312 0.88272 0.91675 0.94237 1.20673 1.00675 0.89797 1.00066 1.20730 0.91953 0.98925 0.98624 1.20454 0.92947 0.87943 1.06630 1.98375 1.80470 1.32813 1.92624 1.20603 1.00049 0.90426 0.97657 1.19077 0.93628 0.92447 1.07318 0.82700 0.75215 0.91488 0.91485 0.92300 0.92303 0.96240 0.96234 0.92859 0.83536 0.84284 0.84948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -5.01 18.54 41.84 0.78 -4.24 16 2 C 0.25 2.84 14.36 -22.47 -0.32 2.51 16 3 C 0.06 0.66 5.93 -104.46 -0.62 0.04 16 4 C -0.14 -1.47 9.03 -38.69 -0.35 -1.82 16 5 C 0.44 5.13 7.61 -155.70 -1.18 3.95 16 6 N -0.70 -8.21 5.72 -60.46 -0.35 -8.56 16 7 C 0.11 1.48 4.85 -4.04 -0.02 1.46 16 8 C -0.12 -2.05 5.27 -26.73 -0.14 -2.19 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.52 -13.83 9.11 -34.44 -0.31 -14.15 16 11 H 0.06 1.44 7.74 -52.49 -0.41 1.04 16 12 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 13 N -0.89 -25.64 13.29 55.43 0.74 -24.91 16 14 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 N -0.54 -6.49 10.27 -10.31 -0.11 -6.59 16 19 C 0.20 2.14 6.62 -84.90 -0.56 1.58 16 20 C -0.09 -0.79 9.99 -39.44 -0.39 -1.19 16 21 C -0.08 -0.63 9.72 -39.92 -0.39 -1.02 16 22 C -0.05 -0.46 6.28 -39.80 -0.25 -0.71 16 23 Cl -0.07 -0.60 28.92 -51.86 -1.50 -2.10 16 24 C -0.07 -0.65 9.21 -39.61 -0.36 -1.01 16 25 C -0.12 -1.23 5.90 -104.71 -0.62 -1.85 16 26 H 0.16 1.47 6.58 -52.49 -0.35 1.12 16 27 H 0.41 4.57 8.58 -40.82 -0.35 4.22 16 28 H 0.07 0.86 7.88 -51.92 -0.41 0.45 16 29 H 0.07 0.86 7.88 -51.93 -0.41 0.45 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 37 H 0.13 1.20 7.35 -52.48 -0.39 0.81 16 LS Contribution 344.90 15.07 5.20 5.20 Total: -1.00 -28.99 344.90 -10.00 -39.00 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -3.98 Total: -1.06 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -5.76 Total: -12.49 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 1.06 Total: -44.29 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.50 Total: -2.10 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.99 -10.00 -39.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301291000.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.747 kcal (2) G-P(sol) polarization free energy of solvation -28.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds