Wall clock time and date at job start Tue Mar 31 2020 11:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.38848 * 121.34561 * 194.68592 * 3 2 1 5 5 C 1.40017 * 119.42967 * 180.02562 * 4 3 2 6 6 N 1.38765 * 118.82217 * 180.02562 * 5 4 3 7 7 C 1.46505 * 119.99920 * 0.02562 * 6 5 4 8 8 C 1.53000 * 109.47021 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.46779 * 179.97438 * 8 7 6 10 10 C 1.50706 * 109.46446 * 179.97438 * 9 8 7 11 11 H 1.07992 * 120.00286 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99335 * 179.97438 * 10 9 8 13 13 N 1.31517 * 120.00344 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99879 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47155 * 90.00049 * 14 12 10 16 16 H 1.48502 * 109.47161 * 210.00368 * 14 12 10 17 17 H 1.48500 * 109.46940 * 330.00275 * 14 12 10 18 18 N 1.31476 * 122.35278 * 359.95449 * 5 4 3 19 19 C 1.33652 * 122.34020 * 0.07378 * 18 5 4 20 20 C 1.40605 * 121.06868 * 179.97438 * 19 18 5 21 21 C 1.36137 * 119.74548 * 180.02562 * 20 19 18 22 22 C 1.39371 * 121.05453 * 359.97438 * 21 20 19 23 23 Cl 1.73597 * 119.61839 * 180.02562 * 22 21 20 24 24 C 1.36475 * 120.76323 * 0.02562 * 22 21 20 25 25 C 1.39867 * 119.58408 * 0.02562 * 24 22 21 26 26 H 1.08001 * 120.28527 * 0.05390 * 4 3 2 27 27 H 0.96995 * 120.00210 * 179.97438 * 6 5 4 28 28 H 1.09007 * 109.47015 * 300.00021 * 7 6 5 29 29 H 1.09001 * 109.47101 * 59.99715 * 7 6 5 30 30 H 1.08999 * 109.46846 * 299.99182 * 8 7 6 31 31 H 1.08996 * 109.47134 * 59.99941 * 8 7 6 32 32 H 1.08999 * 109.46814 * 299.99264 * 9 8 7 33 33 H 1.08996 * 109.47285 * 60.00096 * 9 8 7 34 34 H 0.97006 * 119.99750 * 179.97438 * 13 12 10 35 35 H 1.07997 * 120.12858 * 0.02562 * 20 19 18 36 36 H 1.07996 * 119.46832 * 180.02562 * 21 20 19 37 37 H 1.08005 * 120.20301 * 179.73116 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2898 1.1480 0.3006 5 6 4.6892 1.1035 0.2882 6 7 5.3979 2.2574 0.5911 7 6 4.6812 3.4930 0.9168 8 6 5.6899 4.6060 1.2080 9 6 4.9413 5.8965 1.5475 10 6 5.9349 6.9926 1.8349 11 1 6.9941 6.7890 1.7813 12 6 5.4915 8.2554 2.1664 13 7 4.2015 8.5032 2.2322 14 14 6.7229 9.6139 2.5234 15 1 7.0495 10.3295 1.2638 16 1 6.1373 10.5692 3.4980 17 1 7.9608 9.0229 3.0922 18 7 5.3557 0.0072 0.0012 19 6 4.7448 -1.1426 -0.3006 20 6 5.4844 -2.2993 -0.6040 21 6 4.8343 -3.4561 -0.9082 22 6 3.4420 -3.5156 -0.9241 23 17 2.6516 -5.0106 -1.3166 24 6 2.6928 -2.4123 -0.6347 25 6 3.3304 -1.2080 -0.3192 26 1 2.7762 2.0669 0.5424 27 1 6.3678 2.2458 0.5880 28 1 4.0545 3.7827 0.0732 29 1 4.0561 3.3298 1.7947 30 1 6.3167 4.3166 2.0514 31 1 6.3146 4.7690 0.3299 32 1 4.3147 6.1857 0.7038 33 1 4.3163 5.7338 2.4255 34 1 3.8896 9.3915 2.4658 35 1 6.5639 -2.2702 -0.5957 36 1 5.4068 -4.3420 -1.1401 37 1 1.6143 -2.4675 -0.6540 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000301291000.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:20 Heat of formation + Delta-G solvation = 53.502421 kcal Electronic energy + Delta-G solvation = -21435.108658 eV Core-core repulsion = 18009.156182 eV Total energy + Delta-G solvation = -3425.952476 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.083 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.88694 -39.24613 -38.13711 -37.60339 -36.65881 -35.21108 -34.47649 -33.12025 -31.41106 -30.37433 -28.12850 -26.19659 -25.22297 -24.03032 -23.45015 -22.13404 -20.23156 -18.98654 -18.93441 -18.37248 -17.11069 -16.53837 -16.50094 -16.42222 -16.27017 -15.74991 -15.50313 -15.18960 -14.85017 -14.74783 -14.31766 -14.27627 -14.21448 -13.85042 -13.68656 -13.52027 -13.08787 -12.86508 -12.80110 -12.48193 -12.33905 -12.24979 -11.93443 -11.57911 -11.49406 -11.44363 -11.17674 -10.67857 -10.52831 -10.48403 -9.65962 -8.58625 -8.18444 -6.27941 -1.07826 -0.24672 0.46538 1.09391 1.27684 1.42817 1.43270 1.53817 1.67599 2.00713 2.02580 2.39983 2.44051 2.99638 3.16185 3.31292 3.49569 3.57077 3.85096 4.04073 4.10275 4.16724 4.25017 4.27681 4.46119 4.60624 4.73938 4.83605 4.96403 5.00114 5.05405 5.16231 5.21406 5.23225 5.55056 5.58236 5.77354 5.85311 5.88528 6.11447 6.27029 6.53044 6.89860 7.04898 7.41360 8.92906 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.029280 B = 0.002145 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.057553 B =13048.381477 C =13978.689376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C 0.273 3.727 3 C 0.063 3.937 4 C -0.139 4.139 5 C 0.433 3.567 6 N -0.701 5.701 7 C 0.127 3.873 8 C -0.106 4.106 9 C 0.024 3.976 10 C -0.540 4.540 11 H 0.061 0.939 12 C -0.001 4.001 13 N -0.932 5.932 14 Si 0.959 3.041 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.263 1.263 18 N -0.551 5.551 19 C 0.180 3.820 20 C -0.090 4.090 21 C -0.074 4.074 22 C -0.049 4.049 23 Cl -0.066 7.066 24 C -0.079 4.079 25 C -0.120 4.120 26 H 0.164 0.836 27 H 0.414 0.586 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.062 0.938 32 H -0.001 1.001 33 H -0.001 1.001 34 H 0.262 0.738 35 H 0.164 0.836 36 H 0.167 0.833 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.551 -25.646 -6.737 26.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.095 5.095 2 C -0.042 4.042 3 C 0.052 3.948 4 C -0.165 4.165 5 C 0.182 3.818 6 N -0.332 5.332 7 C 0.003 3.997 8 C -0.144 4.144 9 C -0.013 4.013 10 C -0.578 4.578 11 H 0.080 0.920 12 C -0.198 4.198 13 N -0.572 5.572 14 Si 0.784 3.216 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.187 1.187 18 N -0.273 5.273 19 C 0.057 3.943 20 C -0.110 4.110 21 C -0.094 4.094 22 C -0.077 4.077 23 Cl -0.037 7.037 24 C -0.099 4.099 25 C -0.127 4.127 26 H 0.181 0.819 27 H 0.252 0.748 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.017 0.983 33 H 0.017 0.983 34 H 0.071 0.929 35 H 0.182 0.818 36 H 0.185 0.815 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.370 -25.508 -6.696 26.374 hybrid contribution -0.079 1.082 0.273 1.118 sum 0.291 -24.426 -6.423 25.258 Atomic orbital electron populations 1.81319 1.12315 1.07685 1.08146 1.25202 0.92020 0.93317 0.93661 1.16804 0.83903 0.93828 1.00267 1.22005 0.93331 0.99241 1.01971 1.18262 0.87565 0.86984 0.88997 1.44821 1.09751 1.06479 1.72186 1.21595 0.95375 0.82022 1.00695 1.21576 0.97767 0.93707 1.01317 1.18942 0.95092 0.91978 0.95322 1.21702 0.93942 0.95798 1.46384 0.92028 1.25918 0.96945 1.01513 0.95472 1.70078 1.14906 1.22387 1.49840 0.85530 0.79221 0.78736 0.78066 1.19995 1.21160 1.18729 1.67109 1.39621 0.98390 1.22168 1.18624 0.88613 0.92041 0.95008 1.20904 1.01526 0.89190 0.99378 1.21011 0.91523 0.99584 0.97250 1.20636 0.93565 0.87867 1.05608 1.98383 1.80502 1.32330 1.92487 1.20642 1.00256 0.90533 0.98419 1.19150 0.93693 0.92609 1.07223 0.81889 0.74838 0.91061 0.91060 0.91915 0.91902 0.98285 0.98279 0.92897 0.81823 0.81538 0.84878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -10.81 18.54 19.00 0.35 -10.45 16 2 C 0.27 6.03 14.36 88.33 1.27 7.30 16 3 C 0.06 1.27 5.93 -19.76 -0.12 1.15 16 4 C -0.14 -2.81 9.03 22.85 0.21 -2.61 16 5 C 0.43 9.59 7.61 133.63 1.02 10.61 16 6 N -0.70 -15.57 5.72 -345.18 -1.97 -17.54 16 7 C 0.13 3.25 4.85 86.38 0.42 3.67 16 8 C -0.11 -3.53 5.27 30.60 0.16 -3.37 16 9 C 0.02 1.14 4.97 29.85 0.15 1.29 16 10 C -0.54 -28.62 9.11 25.60 0.23 -28.39 16 11 H 0.06 3.12 7.74 -2.91 -0.02 3.09 16 12 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 13 N -0.93 -54.40 13.29 21.45 0.28 -54.11 16 14 Si 0.96 42.54 29.54 68.60 2.03 44.56 16 15 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 16 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 17 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 18 N -0.55 -12.36 10.27 -186.54 -1.92 -14.28 16 19 C 0.18 3.60 6.62 40.28 0.27 3.87 16 20 C -0.09 -1.34 9.99 22.36 0.22 -1.12 16 21 C -0.07 -0.92 9.72 22.05 0.21 -0.71 16 22 C -0.05 -0.77 6.28 22.13 0.14 -0.63 16 23 Cl -0.07 -0.97 28.92 -2.72 -0.08 -1.05 16 24 C -0.08 -1.41 9.21 22.25 0.20 -1.20 16 25 C -0.12 -2.38 5.90 -19.92 -0.12 -2.50 16 26 H 0.16 2.96 6.58 -2.91 -0.02 2.95 16 27 H 0.41 8.65 8.58 -92.71 -0.80 7.85 16 28 H 0.07 1.78 7.88 -2.38 -0.02 1.76 16 29 H 0.07 1.78 7.88 -2.39 -0.02 1.76 16 30 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 33 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 35 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 36 H 0.17 1.17 8.06 -2.91 -0.02 1.14 16 37 H 0.13 2.31 7.35 -2.91 -0.02 2.29 16 Total: -1.00 -61.95 344.90 3.75 -58.20 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 0.33 Total: 6.88 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 4.73 Total: -12.20 kcal Atomic # 7 Polarization: -93.13 SS G_CDS: -3.25 Total: -96.39 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -0.08 Total: -1.05 kcal Total: -61.95 3.75 -58.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000301291000.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.700 kcal (2) G-P(sol) polarization free energy of solvation -61.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds