Wall clock time and date at job start Tue Mar 31 2020 10:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47191 * 2 1 4 4 N 1.46499 * 109.47170 * 183.37585 * 3 2 1 5 5 C 1.36940 * 119.99625 * 273.60687 * 4 3 2 6 6 H 1.08001 * 120.00132 * 137.78145 * 5 4 3 7 7 C 1.38813 * 120.00242 * 317.78050 * 5 4 3 8 8 N 1.31613 * 120.00286 * 157.82477 * 7 5 4 9 9 Si 1.86810 * 119.99712 * 337.82012 * 7 5 4 10 10 H 1.48498 * 109.46729 * 95.58230 * 9 7 5 11 11 H 1.48500 * 109.46930 * 215.57698 * 9 7 5 12 12 H 1.48496 * 109.47119 * 335.58011 * 9 7 5 13 13 S 1.65595 * 120.00224 * 93.60617 * 4 3 2 14 14 O 1.42100 * 106.40154 * 156.45904 * 13 4 3 15 15 O 1.42097 * 106.40176 * 23.54241 * 13 4 3 16 16 C 1.76191 * 107.22149 * 269.99865 * 13 4 3 17 17 C 1.38322 * 119.96011 * 269.98100 * 16 13 4 18 18 C 1.38289 * 120.15887 * 180.02562 * 17 16 13 19 19 C 1.38101 * 120.07999 * 359.68251 * 18 17 16 20 20 C 1.38955 * 119.92050 * 0.61054 * 19 18 17 21 21 S 1.76197 * 120.08115 * 179.68153 * 20 19 18 22 22 C 1.81401 * 103.00095 * 359.72794 * 21 20 19 23 23 C 1.38067 * 119.96008 * 89.99821 * 16 13 4 24 24 H 1.09005 * 109.46871 * 299.99758 * 1 2 3 25 25 H 1.08990 * 109.47435 * 59.99862 * 1 2 3 26 26 H 1.08999 * 109.47094 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47020 * 239.99702 * 2 1 3 28 28 H 1.09002 * 109.47166 * 119.99910 * 2 1 3 29 29 H 1.09005 * 109.47164 * 63.37104 * 3 2 1 30 30 H 1.08998 * 109.46718 * 303.37334 * 3 2 1 31 31 H 0.97003 * 120.00328 * 180.02562 * 8 7 5 32 32 H 1.07994 * 119.92102 * 359.97438 * 17 16 13 33 33 H 1.07999 * 119.95664 * 179.97438 * 18 17 16 34 34 H 1.08002 * 120.03911 * 180.29815 * 19 18 17 35 35 H 1.09001 * 109.46939 * 59.99994 * 22 21 20 36 36 H 1.09000 * 109.46813 * 179.97438 * 22 21 20 37 37 H 1.08998 * 109.46749 * 299.99779 * 22 21 20 38 38 H 1.08001 * 120.03596 * 0.02562 * 23 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5028 1.4433 -0.0813 5 6 4.2520 1.3458 1.0608 6 1 5.1247 0.7100 1.0815 7 6 3.8898 2.0644 2.1919 8 7 4.3007 1.6733 3.3795 9 14 2.8193 3.5866 2.0284 10 1 1.3986 3.2191 2.2553 11 1 3.2365 4.5955 3.0350 12 1 2.9721 4.1550 0.6651 13 16 4.2501 1.5620 -1.5543 14 8 5.5486 2.0824 -1.3046 15 8 3.3182 2.1844 -2.4280 16 6 4.4788 -0.0778 -2.1569 17 6 5.6380 -0.7693 -1.8548 18 6 5.8219 -2.0564 -2.3261 19 6 4.8453 -2.6582 -3.0949 20 6 3.6821 -1.9643 -3.4055 21 16 2.4370 -2.7250 -4.3932 22 6 3.1385 -4.3602 -4.7462 23 6 3.5008 -0.6707 -2.9303 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.7269 1.9386 0.9187 30 1 1.6281 1.9734 -0.8582 31 1 4.0473 2.1751 4.1700 32 1 6.4015 -0.3028 -1.2502 33 1 6.7285 -2.5932 -2.0886 34 1 4.9876 -3.6651 -3.4586 35 1 3.3128 -4.8906 -3.8100 36 1 2.4417 -4.9293 -5.3615 37 1 4.0823 -4.2433 -5.2788 38 1 2.5963 -0.1299 -3.1663 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337764843.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:45 Heat of formation + Delta-G solvation = -40.864885 kcal Electronic energy + Delta-G solvation = -22822.127913 eV Core-core repulsion = 19497.278270 eV Total energy + Delta-G solvation = -3324.849643 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -38.91958 -36.55176 -36.20284 -34.86276 -32.79942 -31.53751 -31.33506 -30.99094 -29.07447 -25.92987 -23.84404 -23.05537 -22.83023 -21.13687 -18.89607 -18.08343 -17.05589 -16.58274 -16.31873 -15.73985 -15.57353 -15.09020 -14.46134 -14.17061 -14.07937 -14.05603 -13.68815 -13.32991 -13.07531 -12.97810 -12.81876 -12.50744 -12.05601 -12.02692 -11.71264 -11.62338 -11.23592 -11.10957 -10.96704 -10.88079 -10.74034 -10.48654 -10.36827 -10.23787 -10.02735 -9.89879 -9.79993 -9.23745 -8.85331 -8.05544 -7.48939 -6.42577 -4.04432 0.88178 1.26751 1.31272 1.42497 2.25262 3.13221 3.29478 3.37413 3.46625 4.06693 4.23990 4.56666 4.77388 4.78766 4.79337 4.83343 4.92509 5.16466 5.31751 5.36495 5.52375 5.54251 5.60244 5.68940 5.80397 5.88007 6.00104 6.07265 6.27018 6.29781 6.31745 6.34253 6.42274 6.69429 6.82945 6.84552 7.14543 7.66327 8.25717 9.08720 9.13477 10.66847 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.017892 B = 0.005282 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.584936 B = 5300.102926 C = 5811.720223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.112 3.888 4 N -0.864 5.864 5 C -0.292 4.292 6 H 0.103 0.897 7 C 0.075 3.925 8 N -0.856 5.856 9 Si 0.868 3.132 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.262 1.262 13 S 2.632 3.368 14 O -0.959 6.959 15 O -0.995 6.995 16 C -0.633 4.633 17 C -0.017 4.017 18 C -0.124 4.124 19 C -0.091 4.091 20 C -0.112 4.112 21 S -0.117 6.117 22 C -0.145 4.145 23 C -0.002 4.002 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.275 0.725 32 H 0.145 0.855 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.083 0.917 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.218 -10.837 -10.964 15.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.178 4.178 3 C -0.014 4.014 4 N -0.695 5.695 5 C -0.428 4.428 6 H 0.121 0.879 7 C -0.135 4.135 8 N -0.493 5.493 9 Si 0.695 3.305 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.186 1.186 13 S 2.730 3.270 14 O -0.949 6.949 15 O -0.984 6.984 16 C -0.718 4.718 17 C -0.038 4.038 18 C -0.144 4.144 19 C -0.115 4.115 20 C -0.225 4.225 21 S 0.124 5.876 22 C -0.314 4.314 23 C -0.026 4.026 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.163 0.837 33 H 0.150 0.850 34 H 0.144 0.856 35 H 0.103 0.897 36 H 0.126 0.874 37 H 0.102 0.898 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.036 -9.745 -11.808 15.833 hybrid contribution 0.735 -0.554 0.550 1.072 sum -3.301 -10.299 -11.258 15.611 Atomic orbital electron populations 1.21732 0.96320 1.01177 1.01553 1.21938 0.94860 0.98250 1.02797 1.21571 0.81103 0.96472 1.02290 1.52883 1.10490 1.86706 1.19434 1.18620 1.12120 1.25224 0.86812 0.87917 1.25441 0.96587 0.96592 0.94925 1.69826 1.43871 1.37813 0.97832 0.87028 0.80174 0.84055 0.79200 1.19829 1.21235 1.18574 1.04960 0.74127 0.73637 0.74266 1.93470 1.40745 1.75935 1.84746 1.93428 1.63826 1.73339 1.67845 1.31423 1.01682 1.27386 1.11300 1.21061 0.95072 0.93552 0.94155 1.21162 0.99196 0.95518 0.98519 1.21324 0.93003 0.99196 0.97969 1.21723 0.98420 0.98221 1.04101 1.85522 1.25706 1.13713 1.62682 1.23664 1.05270 0.96956 1.05499 1.20482 0.97504 0.92254 0.92384 0.92810 0.92948 0.92989 0.92671 0.90482 0.91112 0.90834 0.91504 0.83724 0.84969 0.85644 0.89739 0.87427 0.89847 0.84109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.91 37.16 0.37 -1.84 16 2 C -0.14 -2.49 6.25 -26.73 -0.17 -2.66 16 3 C 0.11 2.34 4.58 -4.04 -0.02 2.32 16 4 N -0.86 -20.08 2.37 -59.91 -0.14 -20.22 16 5 C -0.29 -7.56 9.27 -15.06 -0.14 -7.70 16 6 H 0.10 2.77 8.06 -52.49 -0.42 2.35 16 7 C 0.07 1.99 5.30 -17.43 -0.09 1.90 16 8 N -0.86 -23.54 13.97 55.49 0.78 -22.77 16 9 Si 0.87 20.69 25.26 -169.99 -4.29 16.39 16 10 H -0.27 -6.04 6.71 56.52 0.38 -5.66 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.26 -6.35 7.11 56.52 0.40 -5.94 16 13 S 2.63 58.90 5.65 -107.50 -0.61 58.30 16 14 O -0.96 -23.89 16.49 -57.17 -0.94 -24.83 16 15 O -0.99 -23.00 15.84 -57.17 -0.91 -23.91 16 16 C -0.63 -11.89 5.97 -39.61 -0.24 -12.13 16 17 C -0.02 -0.29 9.52 -39.53 -0.38 -0.67 16 18 C -0.12 -1.70 10.04 -39.61 -0.40 -2.10 16 19 C -0.09 -1.18 9.36 -39.37 -0.37 -1.55 16 20 C -0.11 -1.64 6.11 -39.04 -0.24 -1.88 16 21 S -0.12 -1.42 22.56 -107.50 -2.43 -3.84 16 22 C -0.15 -1.12 9.15 101.05 0.92 -0.20 16 23 C 0.00 -0.04 7.98 -39.36 -0.31 -0.35 16 24 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.95 6.80 -51.93 -0.35 0.59 16 28 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 29 H 0.07 1.53 3.73 -51.93 -0.19 1.34 16 30 H 0.07 1.45 6.94 -51.93 -0.36 1.09 16 31 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 32 H 0.15 2.44 7.61 -52.49 -0.40 2.04 16 33 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 34 H 0.13 1.21 5.88 -52.49 -0.31 0.91 16 35 H 0.08 0.60 7.74 -51.92 -0.40 0.20 16 36 H 0.11 0.64 8.14 -51.92 -0.42 0.21 16 37 H 0.08 0.58 7.76 -51.92 -0.40 0.17 16 38 H 0.14 2.36 7.61 -52.49 -0.40 1.96 16 LS Contribution 335.73 15.07 5.06 5.06 Total: -1.00 -30.66 335.73 -9.48 -40.14 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -4.94 Total: 2.55 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: -1.06 Total: -26.86 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.63 Total: -42.99 kcal Atomic # 8 Polarization: -46.90 SS G_CDS: -1.85 Total: -48.74 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.29 Total: 16.39 kcal Atomic # 16 Polarization: 57.49 SS G_CDS: -3.03 Total: 54.45 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.66 -9.48 -40.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337764843.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.724 kcal (2) G-P(sol) polarization free energy of solvation -30.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds