Wall clock time and date at job start Tue Mar 31 2020 10:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81390 * 1 3 3 C 1.76193 * 103.00179 * 2 1 4 4 C 1.39006 * 120.07741 * 0.02562 * 3 2 1 5 5 C 1.38061 * 119.91785 * 179.97438 * 4 3 2 6 6 C 1.38322 * 120.07947 * 359.72516 * 5 4 3 7 7 C 1.38277 * 120.16530 * 0.55168 * 6 5 4 8 8 S 1.76203 * 119.96458 * 179.72325 * 7 6 5 9 9 O 1.42100 * 106.40258 * 156.18403 * 8 7 6 10 10 O 1.42101 * 106.40099 * 23.26680 * 8 7 6 11 11 N 1.65597 * 107.21595 * 269.72742 * 8 7 6 12 12 C 1.46503 * 119.99956 * 269.99410 * 11 8 7 13 13 C 1.46497 * 120.00227 * 89.99875 * 11 8 7 14 14 H 1.09003 * 109.46733 * 0.02562 * 13 11 8 15 15 C 1.53000 * 109.47145 * 119.99787 * 13 11 8 16 16 C 1.50694 * 109.47115 * 239.99861 * 13 11 8 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 13 11 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 11 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.38112 * 120.07770 * 359.44811 * 7 6 5 25 25 H 1.09008 * 109.47484 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47575 * 299.99748 * 1 2 3 27 27 H 1.08996 * 109.47539 * 59.99900 * 1 2 3 28 28 H 1.08000 * 120.03879 * 359.96080 * 4 3 2 29 29 H 1.07993 * 119.95950 * 180.02562 * 5 4 3 30 30 H 1.08003 * 119.92243 * 180.29536 * 6 5 4 31 31 H 1.08994 * 109.47665 * 270.00896 * 12 11 8 32 32 H 1.09008 * 109.46786 * 30.00504 * 12 11 8 33 33 H 1.08997 * 109.47360 * 149.99945 * 12 11 8 34 34 H 1.09007 * 109.47356 * 300.00099 * 15 13 11 35 35 H 1.09000 * 109.47156 * 59.99824 * 15 13 11 36 36 H 1.08997 * 109.47359 * 180.02562 * 15 13 11 37 37 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 38 38 H 1.07999 * 120.03950 * 180.25068 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1950 2.6662 0.0005 5 6 1.5093 4.0105 0.0011 6 6 2.8327 4.4130 0.0068 7 6 3.8454 3.4715 0.0005 8 16 5.5293 3.9902 0.0005 9 8 6.2808 2.9138 0.5444 10 8 5.5450 5.3025 0.5455 11 7 5.9975 4.1352 -1.5813 12 6 6.5782 2.9869 -2.2815 13 6 5.8311 5.4118 -2.2804 14 1 5.3873 6.1417 -1.6032 15 6 7.1964 5.9175 -2.7508 16 6 4.9293 5.2181 -3.4721 17 1 4.5212 4.2417 -3.6875 18 6 4.6260 6.2874 -4.2881 19 7 5.1232 7.4764 -4.0261 20 14 3.5087 6.0470 -5.7657 21 1 4.3273 5.6925 -6.9529 22 1 2.5446 4.9531 -5.4846 23 1 2.7659 7.3046 -6.0343 24 6 3.5385 2.1249 0.0000 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.1615 2.3525 0.0003 29 1 0.7211 4.7487 0.0019 30 1 3.0757 5.4654 0.0120 31 1 7.6603 2.9909 -2.1510 32 1 6.1662 2.0649 -1.8712 33 1 6.3400 3.0503 -3.3433 34 1 7.8487 6.0576 -1.8888 35 1 7.6406 5.1877 -3.4277 36 1 7.0727 6.8675 -3.2705 37 1 4.9101 8.2285 -4.6004 38 1 4.3300 1.3901 -0.0008 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337797496.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:25 Heat of formation + Delta-G solvation = -43.924067 kcal Electronic energy + Delta-G solvation = -22615.163435 eV Core-core repulsion = 19290.181136 eV Total energy + Delta-G solvation = -3324.982299 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.95302 -36.74936 -36.18514 -35.30143 -32.63509 -31.60057 -31.03751 -29.12534 -29.08042 -25.54786 -25.20322 -23.16283 -22.88236 -20.76689 -18.96534 -17.72961 -16.87653 -16.46454 -16.37397 -15.89598 -15.55185 -15.01602 -14.49247 -14.42301 -14.08937 -13.75117 -13.51206 -13.25255 -13.01445 -12.87643 -12.70027 -12.14102 -12.00094 -11.85007 -11.67003 -11.50009 -11.39142 -11.23631 -10.99806 -10.87608 -10.55877 -10.45277 -10.39412 -10.23254 -10.10106 -9.91546 -9.34012 -9.20224 -8.51338 -7.99098 -7.51473 -6.12610 -4.20882 0.77713 1.06696 1.25466 1.36155 2.22580 3.22012 3.29639 3.31258 3.36898 3.73509 4.29749 4.33113 4.69057 4.77399 4.78563 4.80665 4.94653 5.18066 5.26425 5.34815 5.45704 5.61127 5.62226 5.80246 6.01662 6.16534 6.20826 6.29749 6.31812 6.65035 6.79414 6.85115 6.87288 7.08535 7.42141 7.59322 7.74754 8.01709 8.22333 8.82387 9.45589 10.92342 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.012873 B = 0.005538 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.526511 B = 5054.607890 C = 6185.322808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.118 6.118 3 C -0.113 4.113 4 C -0.087 4.087 5 C -0.121 4.121 6 C -0.008 4.008 7 C -0.647 4.647 8 S 2.684 3.316 9 O -0.974 6.974 10 O -0.957 6.957 11 N -0.978 5.978 12 C 0.104 3.896 13 C 0.265 3.735 14 H 0.061 0.939 15 C -0.144 4.144 16 C -0.527 4.527 17 H 0.063 0.937 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.894 3.106 21 H -0.280 1.280 22 H -0.275 1.275 23 H -0.286 1.286 24 C -0.001 4.001 25 H 0.108 0.892 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.127 0.873 29 H 0.134 0.866 30 H 0.146 0.854 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.014 0.986 35 H 0.033 0.967 36 H 0.094 0.906 37 H 0.264 0.736 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.791 -10.641 6.252 14.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.314 4.314 2 S 0.123 5.877 3 C -0.226 4.226 4 C -0.110 4.110 5 C -0.142 4.142 6 C -0.029 4.029 7 C -0.733 4.733 8 S 2.774 3.226 9 O -0.964 6.964 10 O -0.947 6.947 11 N -0.818 5.818 12 C -0.042 4.042 13 C 0.163 3.837 14 H 0.079 0.921 15 C -0.204 4.204 16 C -0.566 4.566 17 H 0.081 0.919 18 C -0.137 4.137 19 N -0.524 5.524 20 Si 0.722 3.278 21 H -0.206 1.206 22 H -0.200 1.200 23 H -0.212 1.212 24 C -0.026 4.026 25 H 0.126 0.874 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.145 0.855 29 H 0.152 0.848 30 H 0.164 0.836 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.033 0.967 35 H 0.052 0.948 36 H 0.112 0.888 37 H 0.074 0.926 38 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.670 -11.369 6.915 14.885 hybrid contribution -2.297 0.818 -1.326 2.776 sum -8.967 -10.551 5.589 14.932 Atomic orbital electron populations 1.23669 0.95000 1.07060 1.05649 1.85482 1.06130 1.02908 1.93159 1.21714 0.96740 0.96566 1.07539 1.21363 0.98068 0.93432 0.98172 1.21174 0.96882 0.95349 1.00757 1.21049 0.91949 0.99765 0.90184 1.31367 1.26515 1.00732 1.14733 1.02173 0.73604 0.73302 0.73553 1.93518 1.68630 1.56654 1.77590 1.93559 1.86600 1.37511 1.77027 1.57424 1.74202 1.19956 1.30250 1.21261 0.97272 0.86134 0.99573 1.18812 0.94487 0.77929 0.92489 0.92117 1.22055 0.96291 1.03295 0.98753 1.21386 1.29017 0.95687 1.10531 0.91876 1.24896 0.96008 0.95081 0.97674 1.69877 1.44020 0.99958 1.38551 0.86567 0.80754 0.77583 0.82925 1.20570 1.19985 1.21156 1.20450 0.95007 0.94179 0.92948 0.87383 0.89800 0.89686 0.85545 0.84804 0.83609 0.93414 0.93004 0.89962 0.96704 0.94754 0.88786 0.92606 0.84132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.15 101.05 0.92 -0.21 16 2 S -0.12 -1.41 22.56 -107.50 -2.43 -3.83 16 3 C -0.11 -1.64 6.11 -39.03 -0.24 -1.88 16 4 C -0.09 -1.14 9.36 -39.36 -0.37 -1.51 16 5 C -0.12 -1.71 10.04 -39.62 -0.40 -2.11 16 6 C -0.01 -0.14 9.52 -39.54 -0.38 -0.51 16 7 C -0.65 -11.54 5.97 -39.61 -0.24 -11.78 16 8 S 2.68 53.09 5.64 -107.50 -0.61 52.49 16 9 O -0.97 -19.73 16.35 -57.17 -0.93 -20.67 16 10 O -0.96 -21.18 15.83 -57.17 -0.91 -22.09 16 11 N -0.98 -20.13 3.06 -115.85 -0.35 -20.48 16 12 C 0.10 1.84 9.28 59.85 0.56 2.39 16 13 C 0.27 6.34 2.62 -69.09 -0.18 6.15 16 14 H 0.06 1.58 6.91 -51.93 -0.36 1.22 16 15 C -0.14 -3.36 8.97 37.16 0.33 -3.03 16 16 C -0.53 -13.28 7.99 -34.44 -0.28 -13.56 16 17 H 0.06 1.57 7.33 -52.49 -0.38 1.19 16 18 C 0.07 1.71 5.30 -17.82 -0.09 1.62 16 19 N -0.89 -23.80 11.32 55.43 0.63 -23.17 16 20 Si 0.89 20.19 29.54 -169.99 -5.02 15.17 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 24 C 0.00 -0.02 9.27 -39.36 -0.36 -0.39 16 25 H 0.11 0.64 8.14 -51.92 -0.42 0.22 16 26 H 0.08 0.58 7.75 -51.92 -0.40 0.18 16 27 H 0.08 0.63 7.75 -51.93 -0.40 0.23 16 28 H 0.13 1.25 5.88 -52.49 -0.31 0.94 16 29 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.15 2.46 7.60 -52.48 -0.40 2.06 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.80 7.79 -51.92 -0.40 0.39 16 33 H 0.08 1.47 7.02 -51.93 -0.36 1.11 16 34 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.03 0.74 7.67 -51.93 -0.40 0.35 16 36 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 37 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 38 H 0.14 2.17 7.61 -52.49 -0.40 1.77 16 LS Contribution 339.40 15.07 5.11 5.11 Total: -1.00 -30.35 339.40 -10.19 -40.54 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -4.96 Total: 1.74 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: -0.72 Total: -24.80 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: 0.27 Total: -43.65 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -1.84 Total: -42.76 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 51.69 SS G_CDS: -3.03 Total: 48.65 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.35 -10.19 -40.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337797496.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.386 kcal (2) G-P(sol) polarization free energy of solvation -30.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds