Wall clock time and date at job start Tue Mar 31 2020 10:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81390 * 1 3 3 C 1.76193 * 103.00179 * 2 1 4 4 C 1.39006 * 120.07741 * 0.02562 * 3 2 1 5 5 C 1.38061 * 119.91785 * 179.97438 * 4 3 2 6 6 C 1.38322 * 120.07947 * 359.72516 * 5 4 3 7 7 C 1.38277 * 120.16530 * 0.55168 * 6 5 4 8 8 S 1.76203 * 119.96458 * 179.72325 * 7 6 5 9 9 O 1.42100 * 106.40258 * 156.18403 * 8 7 6 10 10 O 1.42101 * 106.40099 * 23.26680 * 8 7 6 11 11 N 1.65597 * 107.21595 * 269.72742 * 8 7 6 12 12 C 1.46503 * 119.99956 * 269.99410 * 11 8 7 13 13 C 1.46497 * 120.00227 * 89.99875 * 11 8 7 14 14 H 1.09003 * 109.46733 * 0.02562 * 13 11 8 15 15 C 1.53000 * 109.47145 * 119.99787 * 13 11 8 16 16 C 1.50694 * 109.47115 * 239.99861 * 13 11 8 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 13 11 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 11 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.38112 * 120.07770 * 359.44811 * 7 6 5 25 25 H 1.09008 * 109.47484 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47575 * 299.99748 * 1 2 3 27 27 H 1.08996 * 109.47539 * 59.99900 * 1 2 3 28 28 H 1.08000 * 120.03879 * 359.96080 * 4 3 2 29 29 H 1.07993 * 119.95950 * 180.02562 * 5 4 3 30 30 H 1.08003 * 119.92243 * 180.29536 * 6 5 4 31 31 H 1.08994 * 109.47665 * 270.00896 * 12 11 8 32 32 H 1.09008 * 109.46786 * 30.00504 * 12 11 8 33 33 H 1.08997 * 109.47360 * 149.99945 * 12 11 8 34 34 H 1.09007 * 109.47356 * 300.00099 * 15 13 11 35 35 H 1.09000 * 109.47156 * 59.99824 * 15 13 11 36 36 H 1.08997 * 109.47359 * 180.02562 * 15 13 11 37 37 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 38 38 H 1.07999 * 120.03950 * 180.25068 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1950 2.6662 0.0005 5 6 1.5093 4.0105 0.0011 6 6 2.8327 4.4130 0.0068 7 6 3.8454 3.4715 0.0005 8 16 5.5293 3.9902 0.0005 9 8 6.2808 2.9138 0.5444 10 8 5.5450 5.3025 0.5455 11 7 5.9975 4.1352 -1.5813 12 6 6.5782 2.9869 -2.2815 13 6 5.8311 5.4118 -2.2804 14 1 5.3873 6.1417 -1.6032 15 6 7.1964 5.9175 -2.7508 16 6 4.9293 5.2181 -3.4721 17 1 4.5212 4.2417 -3.6875 18 6 4.6260 6.2874 -4.2881 19 7 5.1232 7.4764 -4.0261 20 14 3.5087 6.0470 -5.7657 21 1 4.3273 5.6925 -6.9529 22 1 2.5446 4.9531 -5.4846 23 1 2.7659 7.3046 -6.0343 24 6 3.5385 2.1249 0.0000 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.1615 2.3525 0.0003 29 1 0.7211 4.7487 0.0019 30 1 3.0757 5.4654 0.0120 31 1 7.6603 2.9909 -2.1510 32 1 6.1662 2.0649 -1.8712 33 1 6.3400 3.0503 -3.3433 34 1 7.8487 6.0576 -1.8888 35 1 7.6406 5.1877 -3.4277 36 1 7.0727 6.8675 -3.2705 37 1 4.9101 8.2285 -4.6004 38 1 4.3300 1.3901 -0.0008 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337797496.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:24 Heat of formation + Delta-G solvation = -62.479298 kcal Electronic energy + Delta-G solvation = -22615.968050 eV Core-core repulsion = 19290.181136 eV Total energy + Delta-G solvation = -3325.786914 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.11219 -38.39080 -37.91350 -36.94698 -34.51985 -32.72946 -32.19485 -30.93057 -29.75713 -27.25240 -27.03158 -24.37241 -24.04036 -22.58434 -20.31602 -19.20109 -18.52417 -18.31042 -17.47859 -17.21615 -17.01180 -16.60159 -15.99624 -15.42596 -15.20755 -14.96203 -14.81970 -14.72070 -14.45743 -14.01052 -13.73504 -13.71356 -13.45395 -13.28860 -13.18893 -13.16619 -12.99946 -12.74358 -12.69534 -12.66772 -12.22477 -12.14192 -12.00121 -11.79818 -11.27584 -11.17704 -11.04099 -10.49225 -10.41169 -9.67076 -8.47768 -8.08805 -6.23121 -0.62224 -0.27853 0.07789 0.45545 1.41186 1.44171 1.46282 1.54771 1.97529 2.36691 2.46718 2.77217 3.19517 3.29630 3.70678 3.83372 4.01715 4.09623 4.24096 4.26204 4.32484 4.42957 4.67164 4.70473 4.79269 4.82115 4.88988 4.98900 5.00420 5.02112 5.15181 5.15517 5.24632 5.61254 5.64690 5.69514 5.84341 6.09867 6.28911 6.85158 7.46118 8.95758 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.012873 B = 0.005538 C = 0.004526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.526511 B = 5054.607890 C = 6185.322808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.138 6.138 3 C -0.116 4.116 4 C -0.078 4.078 5 C -0.118 4.118 6 C -0.037 4.037 7 C -0.658 4.658 8 S 2.693 3.307 9 O -0.983 6.983 10 O -0.990 6.990 11 N -0.985 5.985 12 C 0.096 3.904 13 C 0.270 3.730 14 H 0.032 0.968 15 C -0.139 4.139 16 C -0.530 4.530 17 H 0.064 0.936 18 C 0.021 3.979 19 N -0.915 5.915 20 Si 0.954 3.046 21 H -0.276 1.276 22 H -0.270 1.270 23 H -0.286 1.286 24 C -0.020 4.020 25 H 0.130 0.870 26 H 0.099 0.901 27 H 0.095 0.905 28 H 0.167 0.833 29 H 0.166 0.834 30 H 0.133 0.867 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.021 0.979 35 H 0.044 0.956 36 H 0.072 0.928 37 H 0.264 0.736 38 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.408 -12.661 5.809 17.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.103 5.897 3 C -0.229 4.229 4 C -0.102 4.102 5 C -0.138 4.138 6 C -0.058 4.058 7 C -0.748 4.748 8 S 2.787 3.213 9 O -0.973 6.973 10 O -0.980 6.980 11 N -0.825 5.825 12 C -0.049 4.049 13 C 0.166 3.834 14 H 0.049 0.951 15 C -0.199 4.199 16 C -0.569 4.569 17 H 0.082 0.918 18 C -0.179 4.179 19 N -0.554 5.554 20 Si 0.780 3.220 21 H -0.201 1.201 22 H -0.195 1.195 23 H -0.212 1.212 24 C -0.044 4.044 25 H 0.148 0.852 26 H 0.117 0.883 27 H 0.113 0.887 28 H 0.185 0.815 29 H 0.183 0.817 30 H 0.151 0.849 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.040 0.960 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.235 -13.406 6.472 17.519 hybrid contribution -1.596 1.322 -1.118 2.355 sum -10.831 -12.083 5.354 17.088 Atomic orbital electron populations 1.23852 0.90905 1.08985 1.06879 1.85619 1.10605 1.00753 1.92696 1.22004 0.96241 0.98598 1.06080 1.21847 0.99724 0.92606 0.95993 1.21548 0.96197 0.96818 0.99207 1.21149 0.93458 0.99134 0.92108 1.30857 1.24772 1.01834 1.17300 1.01566 0.74304 0.72482 0.72979 1.93492 1.69766 1.56471 1.77614 1.93508 1.87490 1.39373 1.77664 1.57304 1.75184 1.19723 1.30284 1.21469 0.98128 0.85998 0.99329 1.18507 0.94289 0.78847 0.91740 0.95060 1.21949 0.96424 1.02470 0.99009 1.21578 1.28958 0.95669 1.10710 0.91750 1.25604 0.97306 0.94844 1.00115 1.70003 1.45199 1.00615 1.39557 0.85625 0.79088 0.77406 0.79903 1.20146 1.19458 1.21163 1.20568 0.96450 0.93455 0.93960 0.85150 0.88264 0.88660 0.81539 0.81670 0.84915 0.92199 0.90836 0.90228 0.95967 0.93673 0.90920 0.92653 0.84004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.15 113.37 1.04 -0.48 16 2 S -0.14 -2.92 22.56 -56.49 -1.27 -4.19 16 3 C -0.12 -3.12 6.11 22.63 0.14 -2.98 16 4 C -0.08 -1.79 9.36 22.41 0.21 -1.58 16 5 C -0.12 -3.06 10.04 22.25 0.22 -2.84 16 6 C -0.04 -1.24 9.52 22.30 0.21 -1.03 16 7 C -0.66 -23.72 5.97 22.25 0.13 -23.58 16 8 S 2.69 109.75 5.64 -56.49 -0.32 109.43 16 9 O -0.98 -40.45 16.35 -128.00 -2.09 -42.54 16 10 O -0.99 -46.06 15.83 -128.00 -2.03 -48.09 16 11 N -0.99 -41.28 3.06 -520.45 -1.59 -42.88 16 12 C 0.10 3.36 9.28 127.77 1.19 4.55 16 13 C 0.27 13.24 2.62 44.24 0.12 13.36 16 14 H 0.03 1.72 6.91 -2.39 -0.02 1.70 16 15 C -0.14 -6.61 8.97 71.98 0.65 -5.97 16 16 C -0.53 -26.93 7.99 25.60 0.20 -26.72 16 17 H 0.06 3.19 7.33 -2.91 -0.02 3.17 16 18 C 0.02 1.10 5.30 84.66 0.45 1.55 16 19 N -0.91 -50.01 11.32 21.45 0.24 -49.77 16 20 Si 0.95 41.13 29.54 68.60 2.03 43.15 16 21 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 23 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 24 C -0.02 -0.63 9.27 22.41 0.21 -0.42 16 25 H 0.13 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.10 0.85 7.75 -2.39 -0.02 0.84 16 27 H 0.09 0.93 7.75 -2.39 -0.02 0.91 16 28 H 0.17 2.42 5.88 -2.91 -0.02 2.40 16 29 H 0.17 3.15 8.06 -2.91 -0.02 3.13 16 30 H 0.13 4.73 7.60 -2.91 -0.02 4.70 16 31 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.07 2.22 7.79 -2.38 -0.02 2.20 16 33 H 0.08 2.81 7.02 -2.39 -0.02 2.80 16 34 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.04 1.98 7.67 -2.39 -0.02 1.97 16 36 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 37 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 38 H 0.14 4.37 7.61 -2.91 -0.02 4.35 16 Total: -1.00 -66.25 339.40 0.79 -65.47 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 1.06 Total: 15.59 kcal Atomic # 6 Polarization: -50.93 SS G_CDS: 4.76 Total: -46.16 kcal Atomic # 7 Polarization: -91.30 SS G_CDS: -1.35 Total: -92.65 kcal Atomic # 8 Polarization: -86.51 SS G_CDS: -4.12 Total: -90.63 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.15 kcal Atomic # 16 Polarization: 106.83 SS G_CDS: -1.59 Total: 105.24 kcal Total: -66.25 0.79 -65.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337797496.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.986 kcal (2) G-P(sol) polarization free energy of solvation -66.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds