Wall clock time and date at job start Tue Mar 31 2020 10:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76207 * 102.99635 * 2 1 4 4 C 1.38995 * 120.08215 * 0.02562 * 3 2 1 5 5 C 1.38058 * 119.91914 * 179.97438 * 4 3 2 6 6 C 1.38321 * 120.08291 * 0.02562 * 5 4 3 7 7 C 1.38288 * 120.16096 * 359.97438 * 6 5 4 8 8 S 1.76197 * 119.95967 * 180.02562 * 7 6 5 9 9 O 1.42102 * 106.40426 * 23.54552 * 8 7 6 10 10 O 1.42099 * 106.39990 * 156.46055 * 8 7 6 11 11 N 1.65600 * 107.21702 * 270.00217 * 8 7 6 12 12 C 1.46496 * 120.00187 * 90.00607 * 11 8 7 13 13 C 1.46500 * 119.99827 * 269.99890 * 11 8 7 14 14 H 1.08995 * 109.47274 * 0.02562 * 13 11 8 15 15 C 1.52997 * 109.47011 * 240.00266 * 13 11 8 16 16 C 1.50705 * 109.46852 * 120.00512 * 13 11 8 17 17 H 1.07994 * 120.00076 * 359.97438 * 16 13 11 18 18 C 1.37881 * 119.99791 * 180.02562 * 16 13 11 19 19 N 1.31514 * 120.00186 * 359.97438 * 18 16 13 20 20 Si 1.86789 * 119.99864 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47160 * 89.99779 * 20 18 16 22 22 H 1.48495 * 109.47440 * 209.99844 * 20 18 16 23 23 H 1.48507 * 109.47362 * 329.99851 * 20 18 16 24 24 C 1.38108 * 120.07776 * 0.02562 * 7 6 5 25 25 H 1.09000 * 109.46908 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47624 * 299.99940 * 1 2 3 27 27 H 1.09005 * 109.46966 * 60.00404 * 1 2 3 28 28 H 1.07997 * 120.03777 * 359.95614 * 4 3 2 29 29 H 1.07996 * 119.95772 * 180.02562 * 5 4 3 30 30 H 1.07995 * 119.92425 * 180.02562 * 6 5 4 31 31 H 1.08997 * 109.47515 * 89.99196 * 12 11 8 32 32 H 1.08996 * 109.47007 * 210.00087 * 12 11 8 33 33 H 1.09007 * 109.46722 * 329.99178 * 12 11 8 34 34 H 1.09001 * 109.47797 * 59.99996 * 15 13 11 35 35 H 1.09006 * 109.47274 * 180.02562 * 15 13 11 36 36 H 1.09001 * 109.47245 * 299.99720 * 15 13 11 37 37 H 0.96993 * 120.00345 * 180.02562 * 19 18 16 38 38 H 1.07995 * 120.03688 * 180.27531 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2102 1.7169 0.0000 4 6 1.1950 2.6663 0.0005 5 6 1.5093 4.0106 0.0011 6 6 2.8326 4.4132 0.0005 7 6 3.8454 3.4716 0.0000 8 16 5.5292 3.9904 0.0000 9 8 5.5448 5.3027 0.5451 10 8 6.2807 2.9140 0.5439 11 7 5.9974 4.1355 -1.5818 12 6 5.8311 5.4121 -2.2808 13 6 6.5781 2.9872 -2.2820 14 1 6.6214 2.1333 -1.6060 15 6 7.9911 3.3380 -2.7524 16 6 5.7233 2.6409 -3.4740 17 1 4.8361 3.2182 -3.6881 18 6 6.0735 1.5865 -4.2904 19 7 7.1537 0.8831 -4.0293 20 14 5.0137 1.1569 -5.7673 21 1 5.4902 1.9108 -6.9546 22 1 5.1068 -0.3005 -6.0363 23 1 3.6013 1.5188 -5.4852 24 6 3.5385 2.1251 -0.0005 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.1616 2.3526 0.0002 29 1 0.7210 4.7488 0.0019 30 1 3.0755 5.4655 0.0014 31 1 6.7279 6.0177 -2.1500 32 1 5.6697 5.2266 -3.3427 33 1 4.9717 5.9421 -1.8699 34 1 8.6094 3.5885 -1.8905 35 1 8.4231 2.4837 -3.2739 36 1 7.9475 4.1917 -3.4287 37 1 7.4002 0.1416 -4.6038 38 1 4.3299 1.3903 0.0035 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337797501.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:27 Heat of formation + Delta-G solvation = -43.230773 kcal Electronic energy + Delta-G solvation = -22707.433659 eV Core-core repulsion = 19382.481423 eV Total energy + Delta-G solvation = -3324.952235 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.94430 -36.74550 -36.17596 -35.29711 -32.61262 -31.58499 -31.02349 -29.11037 -29.00781 -25.54707 -25.18057 -23.13941 -22.88965 -20.74849 -18.95107 -17.70869 -16.87308 -16.48482 -16.33100 -15.79482 -15.59284 -15.00189 -14.44932 -14.39449 -14.00842 -13.74075 -13.47820 -13.27223 -13.00218 -12.80427 -12.68204 -12.12708 -11.99144 -11.84596 -11.64962 -11.49435 -11.38183 -11.22068 -10.98248 -10.85168 -10.54756 -10.43423 -10.27058 -10.21405 -10.07601 -9.90577 -9.32095 -9.18628 -8.48371 -7.98069 -7.41167 -6.09610 -4.17965 0.77674 1.06666 1.28533 1.46061 2.34352 3.24833 3.32279 3.33536 3.37218 3.73836 4.30150 4.36161 4.66841 4.83245 4.85612 4.87451 4.97666 5.16205 5.21371 5.42213 5.50434 5.59931 5.61182 5.81262 6.09291 6.15578 6.19536 6.22737 6.30820 6.65069 6.78587 6.85993 6.88465 7.10025 7.43122 7.61252 7.76969 8.03669 8.24410 8.84761 9.48571 10.95488 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.010396 B = 0.006937 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.633372 B = 4035.390347 C = 5718.519373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 S -0.105 6.105 3 C -0.108 4.108 4 C -0.088 4.088 5 C -0.126 4.126 6 C -0.029 4.029 7 C -0.647 4.647 8 S 2.684 3.316 9 O -0.974 6.974 10 O -0.957 6.957 11 N -0.978 5.978 12 C 0.104 3.896 13 C 0.265 3.735 14 H 0.061 0.939 15 C -0.144 4.144 16 C -0.527 4.527 17 H 0.063 0.937 18 C 0.067 3.933 19 N -0.885 5.885 20 Si 0.894 3.106 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.017 3.983 25 H 0.108 0.892 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.127 0.873 29 H 0.131 0.869 30 H 0.139 0.861 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.014 0.986 35 H 0.094 0.906 36 H 0.033 0.967 37 H 0.264 0.736 38 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.119 3.382 6.244 14.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 S 0.137 5.863 3 C -0.221 4.221 4 C -0.113 4.113 5 C -0.146 4.146 6 C -0.051 4.051 7 C -0.733 4.733 8 S 2.774 3.226 9 O -0.964 6.964 10 O -0.947 6.947 11 N -0.818 5.818 12 C -0.042 4.042 13 C 0.163 3.837 14 H 0.079 0.921 15 C -0.203 4.203 16 C -0.567 4.567 17 H 0.081 0.919 18 C -0.136 4.136 19 N -0.523 5.523 20 Si 0.722 3.278 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.007 4.007 25 H 0.126 0.874 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.144 0.856 29 H 0.149 0.851 30 H 0.157 0.843 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.070 0.930 34 H 0.033 0.967 35 H 0.112 0.888 36 H 0.052 0.948 37 H 0.074 0.926 38 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.889 2.288 6.907 13.096 hybrid contribution -2.225 0.587 -1.323 2.654 sum -13.113 2.875 5.584 14.540 Atomic orbital electron populations 1.23686 0.95542 1.07084 1.05428 1.85765 1.05397 1.02456 1.92635 1.21806 0.96756 0.96904 1.06617 1.21346 0.98086 0.93394 0.98430 1.21084 0.96609 0.95358 1.01593 1.20917 0.92170 0.99049 0.92934 1.31357 1.26241 1.00994 1.14752 1.02174 0.73639 0.73272 0.73559 1.93513 1.87020 1.38326 1.77578 1.93563 1.68162 1.55915 1.77046 1.57428 1.74717 1.19448 1.30248 1.21254 0.99672 0.83689 0.99589 1.18816 0.90876 0.81536 0.92485 0.92138 1.22052 0.97409 1.02156 0.98728 1.21366 1.09910 1.14874 1.10541 0.91920 1.24887 0.95154 0.95859 0.97700 1.69867 1.24088 1.19852 1.38528 0.86566 0.80770 0.77691 0.82811 1.20656 1.21079 1.19949 1.20562 0.95234 0.94422 0.90514 0.87357 0.89918 0.89772 0.85551 0.85080 0.84310 0.93448 0.89976 0.93030 0.96714 0.88780 0.94775 0.92589 0.83499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.15 101.05 0.92 -0.41 16 2 S -0.10 -1.46 22.56 -107.50 -2.43 -3.89 16 3 C -0.11 -1.71 6.11 -39.04 -0.24 -1.94 16 4 C -0.09 -1.17 9.36 -39.37 -0.37 -1.54 16 5 C -0.13 -1.62 10.04 -39.62 -0.40 -2.02 16 6 C -0.03 -0.44 9.52 -39.53 -0.38 -0.81 16 7 C -0.65 -11.58 5.97 -39.61 -0.24 -11.82 16 8 S 2.68 53.24 5.64 -107.50 -0.61 52.63 16 9 O -0.97 -19.41 16.35 -57.17 -0.93 -20.35 16 10 O -0.96 -21.60 15.84 -57.17 -0.91 -22.51 16 11 N -0.98 -20.17 3.06 -115.86 -0.35 -20.53 16 12 C 0.10 1.81 9.28 59.84 0.56 2.37 16 13 C 0.27 6.42 2.62 -69.08 -0.18 6.24 16 14 H 0.06 1.61 6.91 -51.93 -0.36 1.25 16 15 C -0.14 -3.37 8.97 37.16 0.33 -3.04 16 16 C -0.53 -13.48 7.99 -34.44 -0.28 -13.76 16 17 H 0.06 1.57 7.33 -52.49 -0.38 1.19 16 18 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 19 N -0.89 -24.17 11.32 55.43 0.63 -23.54 16 20 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 C 0.02 0.31 9.27 -39.36 -0.36 -0.06 16 25 H 0.11 0.78 8.14 -51.92 -0.42 0.36 16 26 H 0.08 0.63 7.75 -51.93 -0.40 0.23 16 27 H 0.08 0.71 7.75 -51.92 -0.40 0.30 16 28 H 0.13 1.26 5.88 -52.49 -0.31 0.95 16 29 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.14 1.83 7.61 -52.49 -0.40 1.43 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.45 7.02 -51.93 -0.36 1.09 16 33 H 0.05 0.76 7.79 -51.93 -0.40 0.36 16 34 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 36 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 37 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 38 H 0.15 2.82 7.61 -52.49 -0.40 2.43 16 LS Contribution 339.41 15.07 5.11 5.11 Total: -1.00 -30.92 339.41 -10.19 -41.11 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -4.96 Total: 1.57 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: -0.72 Total: -25.13 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.27 Total: -44.06 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -1.84 Total: -42.86 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 51.78 SS G_CDS: -3.03 Total: 48.75 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.92 -10.19 -41.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337797501.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.119 kcal (2) G-P(sol) polarization free energy of solvation -30.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds