Wall clock time and date at job start Tue Mar 31 2020 10:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76207 * 102.99635 * 2 1 4 4 C 1.38995 * 120.08215 * 0.02562 * 3 2 1 5 5 C 1.38058 * 119.91914 * 179.97438 * 4 3 2 6 6 C 1.38321 * 120.08291 * 0.02562 * 5 4 3 7 7 C 1.38288 * 120.16096 * 359.97438 * 6 5 4 8 8 S 1.76197 * 119.95967 * 180.02562 * 7 6 5 9 9 O 1.42102 * 106.40426 * 23.54552 * 8 7 6 10 10 O 1.42099 * 106.39990 * 156.46055 * 8 7 6 11 11 N 1.65600 * 107.21702 * 270.00217 * 8 7 6 12 12 C 1.46496 * 120.00187 * 90.00607 * 11 8 7 13 13 C 1.46500 * 119.99827 * 269.99890 * 11 8 7 14 14 H 1.08995 * 109.47274 * 0.02562 * 13 11 8 15 15 C 1.52997 * 109.47011 * 240.00266 * 13 11 8 16 16 C 1.50705 * 109.46852 * 120.00512 * 13 11 8 17 17 H 1.07994 * 120.00076 * 359.97438 * 16 13 11 18 18 C 1.37881 * 119.99791 * 180.02562 * 16 13 11 19 19 N 1.31514 * 120.00186 * 359.97438 * 18 16 13 20 20 Si 1.86789 * 119.99864 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47160 * 89.99779 * 20 18 16 22 22 H 1.48495 * 109.47440 * 209.99844 * 20 18 16 23 23 H 1.48507 * 109.47362 * 329.99851 * 20 18 16 24 24 C 1.38108 * 120.07776 * 0.02562 * 7 6 5 25 25 H 1.09000 * 109.46908 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47624 * 299.99940 * 1 2 3 27 27 H 1.09005 * 109.46966 * 60.00404 * 1 2 3 28 28 H 1.07997 * 120.03777 * 359.95614 * 4 3 2 29 29 H 1.07996 * 119.95772 * 180.02562 * 5 4 3 30 30 H 1.07995 * 119.92425 * 180.02562 * 6 5 4 31 31 H 1.08997 * 109.47515 * 89.99196 * 12 11 8 32 32 H 1.08996 * 109.47007 * 210.00087 * 12 11 8 33 33 H 1.09007 * 109.46722 * 329.99178 * 12 11 8 34 34 H 1.09001 * 109.47797 * 59.99996 * 15 13 11 35 35 H 1.09006 * 109.47274 * 180.02562 * 15 13 11 36 36 H 1.09001 * 109.47245 * 299.99720 * 15 13 11 37 37 H 0.96993 * 120.00345 * 180.02562 * 19 18 16 38 38 H 1.07995 * 120.03688 * 180.27531 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2102 1.7169 0.0000 4 6 1.1950 2.6663 0.0005 5 6 1.5093 4.0106 0.0011 6 6 2.8326 4.4132 0.0005 7 6 3.8454 3.4716 0.0000 8 16 5.5292 3.9904 0.0000 9 8 5.5448 5.3027 0.5451 10 8 6.2807 2.9140 0.5439 11 7 5.9974 4.1355 -1.5818 12 6 5.8311 5.4121 -2.2808 13 6 6.5781 2.9872 -2.2820 14 1 6.6214 2.1333 -1.6060 15 6 7.9911 3.3380 -2.7524 16 6 5.7233 2.6409 -3.4740 17 1 4.8361 3.2182 -3.6881 18 6 6.0735 1.5865 -4.2904 19 7 7.1537 0.8831 -4.0293 20 14 5.0137 1.1569 -5.7673 21 1 5.4902 1.9108 -6.9546 22 1 5.1068 -0.3005 -6.0363 23 1 3.6013 1.5188 -5.4852 24 6 3.5385 2.1251 -0.0005 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 0.1616 2.3526 0.0002 29 1 0.7210 4.7488 0.0019 30 1 3.0755 5.4655 0.0014 31 1 6.7279 6.0177 -2.1500 32 1 5.6697 5.2266 -3.3427 33 1 4.9717 5.9421 -1.8699 34 1 8.6094 3.5885 -1.8905 35 1 8.4231 2.4837 -3.2739 36 1 7.9475 4.1917 -3.4287 37 1 7.4002 0.1416 -4.6038 38 1 4.3299 1.3903 0.0035 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337797501.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:50:26 Heat of formation + Delta-G solvation = -62.859394 kcal Electronic energy + Delta-G solvation = -22708.284820 eV Core-core repulsion = 19382.481423 eV Total energy + Delta-G solvation = -3325.803396 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.09917 -38.38748 -37.91295 -36.94424 -34.52427 -32.72280 -32.17151 -30.93834 -29.77459 -27.25945 -27.01685 -24.33265 -24.05754 -22.58835 -20.31044 -19.19424 -18.53453 -18.32044 -17.49162 -17.20437 -17.01223 -16.62345 -15.99767 -15.42239 -15.21671 -14.94175 -14.79118 -14.73462 -14.46337 -14.00554 -13.74908 -13.72684 -13.44250 -13.25441 -13.21821 -13.15862 -12.99898 -12.73983 -12.67931 -12.67058 -12.23436 -12.14622 -11.99875 -11.79128 -11.24791 -11.18552 -11.03662 -10.50071 -10.39128 -9.66363 -8.51702 -8.09772 -6.24212 -0.61521 -0.26936 0.10090 0.45399 1.42902 1.43651 1.44562 1.53345 1.98415 2.37726 2.46210 2.77792 3.18810 3.30263 3.73349 3.84726 4.03294 4.10938 4.24033 4.25054 4.33234 4.45338 4.67562 4.71234 4.80151 4.81431 4.92805 4.97903 5.01206 5.03168 5.12698 5.15284 5.26520 5.60808 5.67716 5.69476 5.84306 6.09089 6.27700 6.84145 7.45107 8.94978 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.010396 B = 0.006937 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.633372 B = 4035.390347 C = 5718.519373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.166 6.166 3 C -0.114 4.114 4 C -0.080 4.080 5 C -0.112 4.112 6 C -0.038 4.038 7 C -0.659 4.659 8 S 2.693 3.307 9 O -0.977 6.977 10 O -0.997 6.997 11 N -0.986 5.986 12 C 0.095 3.905 13 C 0.271 3.729 14 H 0.024 0.976 15 C -0.137 4.137 16 C -0.530 4.530 17 H 0.067 0.933 18 C 0.019 3.981 19 N -0.916 5.916 20 Si 0.954 3.046 21 H -0.272 1.272 22 H -0.288 1.288 23 H -0.269 1.269 24 C -0.019 4.019 25 H 0.128 0.872 26 H 0.103 0.897 27 H 0.096 0.904 28 H 0.168 0.832 29 H 0.180 0.820 30 H 0.159 0.841 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.021 0.979 35 H 0.070 0.930 36 H 0.047 0.953 37 H 0.264 0.736 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.979 4.973 5.775 17.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.076 5.924 3 C -0.227 4.227 4 C -0.103 4.103 5 C -0.132 4.132 6 C -0.060 4.060 7 C -0.749 4.749 8 S 2.786 3.214 9 O -0.967 6.967 10 O -0.988 6.988 11 N -0.825 5.825 12 C -0.050 4.050 13 C 0.167 3.833 14 H 0.042 0.958 15 C -0.197 4.197 16 C -0.569 4.569 17 H 0.085 0.915 18 C -0.181 4.181 19 N -0.555 5.555 20 Si 0.780 3.220 21 H -0.198 1.198 22 H -0.214 1.214 23 H -0.194 1.194 24 C -0.044 4.044 25 H 0.146 0.854 26 H 0.122 0.878 27 H 0.115 0.885 28 H 0.185 0.815 29 H 0.197 0.803 30 H 0.177 0.823 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.040 0.960 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.711 3.916 6.437 16.528 hybrid contribution -1.160 0.090 -1.095 1.598 sum -15.871 4.006 5.342 17.218 Atomic orbital electron populations 1.23828 0.90148 1.08955 1.07028 1.85996 1.11347 1.02432 1.92611 1.21950 0.96289 0.98093 1.06374 1.21892 0.99275 0.93078 0.96090 1.21647 0.96606 0.96228 0.98722 1.21305 0.92702 0.99416 0.92562 1.30862 1.25100 1.01519 1.17423 1.01572 0.74265 0.72557 0.72986 1.93493 1.87568 1.38181 1.77462 1.93506 1.70250 1.57201 1.77838 1.57294 1.75378 1.19575 1.30284 1.21510 1.01620 0.82556 0.99348 1.18461 0.91389 0.81870 0.91593 0.95783 1.21932 0.97177 1.01612 0.98994 1.21593 1.09941 1.14759 1.10612 0.91527 1.25640 0.96244 0.95937 1.00302 1.70004 1.25587 1.20343 1.39576 0.85621 0.79357 0.77172 0.79894 1.19761 1.21355 1.19392 1.20446 0.96144 0.94238 0.93560 0.85405 0.87801 0.88468 0.81478 0.80254 0.82305 0.92274 0.90308 0.90099 0.95996 0.91089 0.93425 0.92705 0.86660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 9.15 113.37 1.04 -0.83 16 2 S -0.17 -4.56 22.56 -56.49 -1.27 -5.83 16 3 C -0.11 -3.51 6.11 22.62 0.14 -3.37 16 4 C -0.08 -1.79 9.36 22.41 0.21 -1.58 16 5 C -0.11 -2.37 10.04 22.25 0.22 -2.14 16 6 C -0.04 -1.05 9.52 22.30 0.21 -0.84 16 7 C -0.66 -23.68 5.97 22.25 0.13 -23.54 16 8 S 2.69 109.76 5.64 -56.49 -0.32 109.44 16 9 O -0.98 -38.57 16.35 -128.00 -2.09 -40.67 16 10 O -1.00 -48.21 15.84 -128.00 -2.03 -50.24 16 11 N -0.99 -41.28 3.06 -520.46 -1.59 -42.87 16 12 C 0.09 3.19 9.28 127.77 1.19 4.38 16 13 C 0.27 13.60 2.62 44.25 0.12 13.71 16 14 H 0.02 1.39 6.91 -2.39 -0.02 1.37 16 15 C -0.14 -6.65 8.97 71.98 0.65 -6.01 16 16 C -0.53 -27.54 7.99 25.60 0.20 -27.34 16 17 H 0.07 3.34 7.33 -2.91 -0.02 3.31 16 18 C 0.02 0.99 5.30 84.66 0.45 1.44 16 19 N -0.92 -51.68 11.32 21.45 0.24 -51.44 16 20 Si 0.95 42.26 29.54 68.60 2.03 44.29 16 21 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 22 H -0.29 -12.77 7.11 99.48 0.71 -12.07 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 24 C -0.02 -0.73 9.27 22.41 0.21 -0.52 16 25 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.10 1.08 7.75 -2.39 -0.02 1.06 16 27 H 0.10 1.18 7.75 -2.39 -0.02 1.16 16 28 H 0.17 2.34 5.88 -2.91 -0.02 2.33 16 29 H 0.18 2.09 8.06 -2.91 -0.02 2.07 16 30 H 0.16 3.65 7.61 -2.91 -0.02 3.63 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.08 2.70 7.02 -2.39 -0.02 2.68 16 33 H 0.08 2.22 7.79 -2.38 -0.02 2.20 16 34 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 3.77 6.07 -2.38 -0.01 3.76 16 36 H 0.05 2.11 7.67 -2.39 -0.02 2.09 16 37 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 38 H 0.12 4.95 7.61 -2.91 -0.02 4.93 16 Total: -1.00 -70.50 339.41 0.79 -69.72 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 1.06 Total: 14.24 kcal Atomic # 6 Polarization: -51.40 SS G_CDS: 4.76 Total: -46.64 kcal Atomic # 7 Polarization: -92.96 SS G_CDS: -1.35 Total: -94.31 kcal Atomic # 8 Polarization: -86.78 SS G_CDS: -4.12 Total: -90.90 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Atomic # 16 Polarization: 105.20 SS G_CDS: -1.59 Total: 103.61 kcal Total: -70.50 0.79 -69.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337797501.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.857 kcal (2) G-P(sol) polarization free energy of solvation -70.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds