Wall clock time and date at job start Tue Mar 31 2020 10:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47179 * 2 1 4 4 H 1.08997 * 109.47467 * 305.56873 * 3 2 1 5 5 C 1.50701 * 109.47038 * 185.56886 * 3 2 1 6 6 H 1.08002 * 119.99802 * 244.99760 * 5 3 2 7 7 C 1.37882 * 120.00037 * 64.99357 * 5 3 2 8 8 N 1.31511 * 119.99456 * 9.04533 * 7 5 3 9 9 Si 1.86793 * 120.00035 * 189.04373 * 7 5 3 10 10 H 1.48496 * 109.47389 * 180.02562 * 9 7 5 11 11 H 1.48508 * 109.47253 * 300.00162 * 9 7 5 12 12 H 1.48500 * 109.47340 * 60.00351 * 9 7 5 13 13 N 1.46498 * 109.47050 * 65.57160 * 3 2 1 14 14 S 1.65604 * 120.00040 * 215.10170 * 13 3 2 15 15 O 1.42098 * 106.40089 * 179.36739 * 14 13 3 16 16 O 1.42108 * 106.39796 * 312.28505 * 14 13 3 17 17 C 1.76197 * 107.21954 * 65.82351 * 14 13 3 18 18 C 1.38326 * 119.96096 * 273.41778 * 17 14 13 19 19 C 1.38283 * 120.15884 * 179.76893 * 18 17 14 20 20 C 1.38098 * 120.08096 * 0.50636 * 19 18 17 21 21 C 1.38960 * 119.92043 * 359.74390 * 20 19 18 22 22 S 1.76192 * 120.08024 * 179.97438 * 21 20 19 23 23 C 1.81397 * 103.00291 * 0.02593 * 22 21 20 24 24 C 1.38060 * 119.95686 * 93.69186 * 17 14 13 25 25 H 1.09002 * 109.47066 * 64.56312 * 1 2 3 26 26 H 1.08996 * 109.47400 * 184.56392 * 1 2 3 27 27 H 1.09001 * 109.47327 * 304.56872 * 1 2 3 28 28 H 1.09006 * 109.46782 * 239.99921 * 2 1 3 29 29 H 1.08997 * 109.47075 * 120.00241 * 2 1 3 30 30 H 0.96992 * 120.00854 * 356.97575 * 8 7 5 31 31 H 0.97003 * 120.00386 * 35.09208 * 13 3 2 32 32 H 1.08005 * 119.91772 * 359.97438 * 18 17 14 33 33 H 1.08002 * 119.95978 * 180.25632 * 19 18 17 34 34 H 1.07999 * 120.04078 * 179.76952 * 20 19 18 35 35 H 1.09000 * 109.47268 * 300.00065 * 23 22 21 36 36 H 1.08998 * 109.47313 * 59.99840 * 23 22 21 37 37 H 1.08997 * 109.47372 * 180.02562 * 23 22 21 38 38 H 1.07994 * 120.04320 * 359.95306 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5976 1.9843 -0.8359 5 6 3.5407 1.4447 -0.1379 6 1 4.1566 1.8132 0.6692 7 6 4.1275 0.9762 -1.2943 8 7 3.3836 0.6949 -2.3417 9 14 5.9789 0.7411 -1.3733 10 1 6.3564 0.2319 -2.7162 11 1 6.6538 2.0414 -1.1299 12 1 6.3985 -0.2361 -0.3369 13 7 1.6643 2.0933 1.2576 14 16 1.2652 3.7005 1.2712 15 8 0.9401 4.0217 2.6167 16 8 2.2785 4.3717 0.5349 17 6 -0.2227 3.8763 0.3440 18 6 -0.1661 4.0425 -1.0281 19 6 -1.3315 4.1761 -1.7603 20 6 -2.5562 4.1546 -1.1224 21 6 -2.6167 3.9931 0.2565 22 16 -4.1768 3.9658 1.0747 23 6 -5.3558 4.1801 -0.2871 24 6 -1.4434 3.8539 0.9886 25 1 -0.3633 0.4414 -0.9281 26 1 -0.3634 -1.0243 0.0818 27 1 -0.3634 0.5831 0.8462 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.4185 0.7750 -2.2868 31 1 1.6491 1.5828 2.0823 32 1 0.7905 4.0645 -1.5290 33 1 -1.2838 4.3015 -2.8320 34 1 -3.4658 4.2628 -1.6945 35 1 -5.1626 5.1282 -0.7891 36 1 -5.2416 3.3624 -0.9987 37 1 -6.3716 4.1791 0.1081 38 1 -1.4867 3.7278 2.0603 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337833613.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:59 Heat of formation + Delta-G solvation = -58.650063 kcal Electronic energy + Delta-G solvation = -22593.240296 eV Core-core repulsion = 19267.619431 eV Total energy + Delta-G solvation = -3325.620866 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.07964 -36.77841 -36.22830 -35.26963 -32.26205 -31.70351 -31.14477 -30.83953 -29.17372 -26.19902 -23.26590 -23.17907 -22.98904 -20.46146 -19.31817 -18.22384 -17.22502 -16.89480 -16.45477 -15.84027 -15.66541 -15.02906 -14.56413 -14.17293 -14.11947 -13.79468 -13.75979 -13.36876 -13.18409 -13.03304 -12.94924 -12.36736 -12.22484 -11.78065 -11.61378 -11.57868 -11.45870 -11.30172 -10.76029 -10.69610 -10.55610 -10.47709 -10.16499 -10.13927 -10.09977 -9.98774 -9.60673 -9.36126 -8.42625 -8.06225 -7.60762 -6.40762 -4.13320 0.68273 1.00912 1.14002 1.27734 2.14140 3.28788 3.45324 3.47673 3.65182 3.75480 4.25115 4.52071 4.63568 4.70163 4.71260 4.72275 4.93819 5.16839 5.26157 5.28368 5.37927 5.54070 5.71036 5.87234 5.89047 5.91777 6.05251 6.11764 6.19144 6.27547 6.53430 6.62241 6.68426 6.78424 7.16997 7.30400 7.82676 8.00220 8.45434 8.77522 9.54266 10.94888 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.020156 B = 0.004386 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.810937 B = 6382.360077 C = 6741.301205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C 0.270 3.730 4 H 0.033 0.967 5 C -0.602 4.602 6 H 0.059 0.941 7 C 0.026 3.974 8 N -0.908 5.908 9 Si 1.066 2.934 10 H -0.283 1.283 11 H -0.286 1.286 12 H -0.287 1.287 13 N -1.095 6.095 14 S 2.689 3.311 15 O -0.981 6.981 16 O -0.940 6.940 17 C -0.651 4.651 18 C -0.016 4.016 19 C -0.121 4.121 20 C -0.086 4.086 21 C -0.112 4.112 22 S -0.116 6.116 23 C -0.146 4.146 24 C 0.000 4.000 25 H 0.044 0.956 26 H 0.040 0.960 27 H 0.045 0.955 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.269 0.731 31 H 0.408 0.592 32 H 0.147 0.853 33 H 0.135 0.865 34 H 0.128 0.872 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.108 0.892 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.384 4.227 2.199 16.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C 0.165 3.835 4 H 0.050 0.950 5 C -0.642 4.642 6 H 0.077 0.923 7 C -0.179 4.179 8 N -0.544 5.544 9 Si 0.894 3.106 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.214 1.214 13 N -0.855 5.855 14 S 2.776 3.224 15 O -0.971 6.971 16 O -0.930 6.930 17 C -0.737 4.737 18 C -0.037 4.037 19 C -0.141 4.141 20 C -0.109 4.109 21 C -0.225 4.225 22 S 0.125 5.875 23 C -0.314 4.314 24 C -0.025 4.025 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.241 0.759 32 H 0.165 0.835 33 H 0.153 0.847 34 H 0.146 0.854 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.127 0.873 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.104 4.446 2.563 15.009 hybrid contribution -1.698 0.098 -0.502 1.773 sum -15.802 4.545 2.061 16.571 Atomic orbital electron populations 1.21848 0.98242 1.00029 1.00717 1.21948 0.92754 0.99629 1.02528 1.18642 0.95865 0.89572 0.79423 0.94953 1.22268 0.90777 1.46036 1.05086 0.92259 1.25744 1.06992 0.93520 0.91609 1.70849 1.07306 1.46676 1.29607 0.83580 0.74318 0.76726 0.75987 1.20817 1.21234 1.21380 1.55377 1.83101 1.29371 1.17651 1.02075 0.73688 0.73631 0.73055 1.93524 1.85367 1.83539 1.34680 1.93626 1.53472 1.72635 1.73280 1.31371 1.19455 1.14984 1.07878 1.21148 0.99995 0.90676 0.91874 1.21204 0.91852 1.00639 1.00401 1.21387 0.98773 0.97981 0.92797 1.21744 0.97048 1.07192 0.96509 1.85530 0.95999 1.91783 1.14177 1.23678 1.01421 1.05520 1.00798 1.20479 0.89337 0.92886 0.99775 0.93722 0.94038 0.93630 0.90336 0.92773 0.92021 0.75900 0.83509 0.84682 0.85434 0.89748 0.89676 0.87315 0.83931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.86 37.16 0.37 -2.24 16 2 C -0.13 -2.65 5.22 -26.73 -0.14 -2.79 16 3 C 0.27 6.10 1.77 -69.08 -0.12 5.98 16 4 H 0.03 0.77 6.37 -51.93 -0.33 0.44 16 5 C -0.60 -15.98 8.77 -34.44 -0.30 -16.28 16 6 H 0.06 1.62 7.83 -52.49 -0.41 1.21 16 7 C 0.03 0.71 5.16 -17.82 -0.09 0.62 16 8 N -0.91 -25.39 13.02 55.43 0.72 -24.67 16 9 Si 1.07 24.55 29.91 -169.99 -5.08 19.46 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 12 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 13 N -1.09 -21.45 4.86 -5.88 -0.03 -21.48 16 14 S 2.69 52.37 5.65 -107.50 -0.61 51.76 16 15 O -0.98 -19.71 17.19 -57.17 -0.98 -20.69 16 16 O -0.94 -21.75 17.11 -57.17 -0.98 -22.72 16 17 C -0.65 -11.08 5.88 -39.61 -0.23 -11.31 16 18 C -0.02 -0.25 8.76 -39.53 -0.35 -0.60 16 19 C -0.12 -1.61 10.04 -39.62 -0.40 -2.00 16 20 C -0.09 -1.04 9.36 -39.37 -0.37 -1.41 16 21 C -0.11 -1.52 6.11 -39.03 -0.24 -1.76 16 22 S -0.12 -1.30 22.56 -107.50 -2.43 -3.72 16 23 C -0.15 -1.03 9.15 101.05 0.92 -0.11 16 24 C 0.00 -0.01 9.27 -39.37 -0.36 -0.37 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.04 0.73 7.65 -51.93 -0.40 0.33 16 28 H 0.08 1.80 6.31 -51.93 -0.33 1.47 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.27 7.30 6.04 -40.82 -0.25 7.06 16 31 H 0.41 7.02 8.84 -34.47 -0.30 6.72 16 32 H 0.15 2.51 7.55 -52.48 -0.40 2.12 16 33 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.13 1.15 5.88 -52.49 -0.31 0.84 16 35 H 0.08 0.53 7.75 -51.92 -0.40 0.13 16 36 H 0.08 0.56 7.75 -51.92 -0.40 0.15 16 37 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.14 2.11 7.54 -52.49 -0.40 1.71 16 LS Contribution 341.09 15.07 5.14 5.14 Total: -1.00 -32.35 341.09 -10.39 -42.74 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -4.83 Total: 6.47 kcal Atomic # 6 Polarization: -30.97 SS G_CDS: -1.31 Total: -32.29 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 0.69 Total: -46.14 kcal Atomic # 8 Polarization: -41.46 SS G_CDS: -1.96 Total: -43.42 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.08 Total: 19.46 kcal Atomic # 16 Polarization: 51.07 SS G_CDS: -3.03 Total: 48.04 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.35 -10.39 -42.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337833613.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.907 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds