Wall clock time and date at job start Tue Mar 31 2020 10:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47179 * 2 1 4 4 H 1.08997 * 109.47467 * 305.56873 * 3 2 1 5 5 C 1.50701 * 109.47038 * 185.56886 * 3 2 1 6 6 H 1.08002 * 119.99802 * 244.99760 * 5 3 2 7 7 C 1.37882 * 120.00037 * 64.99357 * 5 3 2 8 8 N 1.31511 * 119.99456 * 9.04533 * 7 5 3 9 9 Si 1.86793 * 120.00035 * 189.04373 * 7 5 3 10 10 H 1.48496 * 109.47389 * 180.02562 * 9 7 5 11 11 H 1.48508 * 109.47253 * 300.00162 * 9 7 5 12 12 H 1.48500 * 109.47340 * 60.00351 * 9 7 5 13 13 N 1.46498 * 109.47050 * 65.57160 * 3 2 1 14 14 S 1.65604 * 120.00040 * 215.10170 * 13 3 2 15 15 O 1.42098 * 106.40089 * 179.36739 * 14 13 3 16 16 O 1.42108 * 106.39796 * 312.28505 * 14 13 3 17 17 C 1.76197 * 107.21954 * 65.82351 * 14 13 3 18 18 C 1.38326 * 119.96096 * 273.41778 * 17 14 13 19 19 C 1.38283 * 120.15884 * 179.76893 * 18 17 14 20 20 C 1.38098 * 120.08096 * 0.50636 * 19 18 17 21 21 C 1.38960 * 119.92043 * 359.74390 * 20 19 18 22 22 S 1.76192 * 120.08024 * 179.97438 * 21 20 19 23 23 C 1.81397 * 103.00291 * 0.02593 * 22 21 20 24 24 C 1.38060 * 119.95686 * 93.69186 * 17 14 13 25 25 H 1.09002 * 109.47066 * 64.56312 * 1 2 3 26 26 H 1.08996 * 109.47400 * 184.56392 * 1 2 3 27 27 H 1.09001 * 109.47327 * 304.56872 * 1 2 3 28 28 H 1.09006 * 109.46782 * 239.99921 * 2 1 3 29 29 H 1.08997 * 109.47075 * 120.00241 * 2 1 3 30 30 H 0.96992 * 120.00854 * 356.97575 * 8 7 5 31 31 H 0.97003 * 120.00386 * 35.09208 * 13 3 2 32 32 H 1.08005 * 119.91772 * 359.97438 * 18 17 14 33 33 H 1.08002 * 119.95978 * 180.25632 * 19 18 17 34 34 H 1.07999 * 120.04078 * 179.76952 * 20 19 18 35 35 H 1.09000 * 109.47268 * 300.00065 * 23 22 21 36 36 H 1.08998 * 109.47313 * 59.99840 * 23 22 21 37 37 H 1.08997 * 109.47372 * 180.02562 * 23 22 21 38 38 H 1.07994 * 120.04320 * 359.95306 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5976 1.9843 -0.8359 5 6 3.5407 1.4447 -0.1379 6 1 4.1566 1.8132 0.6692 7 6 4.1275 0.9762 -1.2943 8 7 3.3836 0.6949 -2.3417 9 14 5.9789 0.7411 -1.3733 10 1 6.3564 0.2319 -2.7162 11 1 6.6538 2.0414 -1.1299 12 1 6.3985 -0.2361 -0.3369 13 7 1.6643 2.0933 1.2576 14 16 1.2652 3.7005 1.2712 15 8 0.9401 4.0217 2.6167 16 8 2.2785 4.3717 0.5349 17 6 -0.2227 3.8763 0.3440 18 6 -0.1661 4.0425 -1.0281 19 6 -1.3315 4.1761 -1.7603 20 6 -2.5562 4.1546 -1.1224 21 6 -2.6167 3.9931 0.2565 22 16 -4.1768 3.9658 1.0747 23 6 -5.3558 4.1801 -0.2871 24 6 -1.4434 3.8539 0.9886 25 1 -0.3633 0.4414 -0.9281 26 1 -0.3634 -1.0243 0.0818 27 1 -0.3634 0.5831 0.8462 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.4185 0.7750 -2.2868 31 1 1.6491 1.5828 2.0823 32 1 0.7905 4.0645 -1.5290 33 1 -1.2838 4.3015 -2.8320 34 1 -3.4658 4.2628 -1.6945 35 1 -5.1626 5.1282 -0.7891 36 1 -5.2416 3.3624 -0.9987 37 1 -6.3716 4.1791 0.1081 38 1 -1.4867 3.7278 2.0603 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337833613.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:58 Heat of formation + Delta-G solvation = -80.307576 kcal Electronic energy + Delta-G solvation = -22594.179437 eV Core-core repulsion = 19267.619431 eV Total energy + Delta-G solvation = -3326.560006 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.19773 -38.45627 -37.96050 -36.95003 -34.21533 -32.79286 -32.42398 -32.25258 -29.77471 -28.06971 -25.00322 -24.43056 -24.12758 -22.15961 -20.74160 -19.64959 -19.09335 -18.47562 -17.48636 -17.23114 -16.98569 -16.44929 -15.72077 -15.64851 -15.44115 -14.99463 -14.97287 -14.80799 -14.77431 -14.07538 -14.01991 -13.72798 -13.41841 -13.30190 -13.20492 -13.15991 -13.02100 -12.74076 -12.59376 -12.41498 -12.06161 -11.91809 -11.75388 -11.70868 -11.39050 -11.29390 -11.11825 -10.47722 -10.43169 -9.92161 -8.52877 -8.51039 -6.25799 -0.65150 -0.35157 0.01532 0.42419 1.38969 1.57445 1.63304 1.82703 2.00941 2.34072 2.60394 2.74034 3.21016 3.35241 3.68029 3.79517 3.94866 4.20719 4.25491 4.27738 4.30176 4.35124 4.37171 4.48737 4.62791 4.66481 4.79038 4.86082 4.92428 4.96057 5.10377 5.16052 5.16928 5.49994 5.55738 5.57899 6.04140 6.19664 6.40000 6.67797 7.46950 8.83630 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.020156 B = 0.004386 C = 0.004153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.810937 B = 6382.360077 C = 6741.301205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.121 4.121 3 C 0.273 3.727 4 H 0.022 0.978 5 C -0.619 4.619 6 H 0.043 0.957 7 C -0.017 4.017 8 N -0.927 5.927 9 Si 1.102 2.898 10 H -0.281 1.281 11 H -0.284 1.284 12 H -0.269 1.269 13 N -1.093 6.093 14 S 2.699 3.301 15 O -0.991 6.991 16 O -0.987 6.987 17 C -0.655 4.655 18 C -0.042 4.042 19 C -0.114 4.114 20 C -0.073 4.073 21 C -0.112 4.112 22 S -0.136 6.136 23 C -0.139 4.139 24 C -0.016 4.016 25 H 0.042 0.958 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.264 0.736 31 H 0.417 0.583 32 H 0.126 0.874 33 H 0.165 0.835 34 H 0.169 0.831 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.130 0.870 38 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.242 4.065 1.668 18.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C 0.167 3.833 4 H 0.040 0.960 5 C -0.658 4.658 6 H 0.061 0.939 7 C -0.217 4.217 8 N -0.565 5.565 9 Si 0.925 3.075 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.194 1.194 13 N -0.854 5.854 14 S 2.791 3.209 15 O -0.982 6.982 16 O -0.977 6.977 17 C -0.746 4.746 18 C -0.064 4.064 19 C -0.135 4.135 20 C -0.097 4.097 21 C -0.225 4.225 22 S 0.105 5.895 23 C -0.307 4.307 24 C -0.041 4.041 25 H 0.061 0.939 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.252 0.748 32 H 0.144 0.856 33 H 0.182 0.818 34 H 0.186 0.814 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.148 0.852 38 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.939 4.270 2.092 17.594 hybrid contribution -1.015 0.224 -0.332 1.091 sum -17.954 4.494 1.760 18.591 Atomic orbital electron populations 1.21752 0.95341 1.01690 1.01143 1.21774 0.95309 0.97561 1.01480 1.18438 0.93787 0.90906 0.80145 0.96032 1.22613 0.93053 1.45611 1.04568 0.93889 1.26837 1.10107 0.93228 0.91513 1.70919 1.07272 1.48134 1.30130 0.83118 0.70734 0.77144 0.76505 1.20608 1.21002 1.19447 1.55150 1.83683 1.29257 1.17283 1.01327 0.73957 0.72999 0.72650 1.93496 1.85666 1.83562 1.35462 1.93563 1.56396 1.73630 1.74094 1.30691 1.18247 1.17687 1.07937 1.21134 1.00600 0.92802 0.91827 1.21534 0.91090 0.99094 1.01748 1.21856 0.99783 0.95643 0.92436 1.22005 0.97662 1.05640 0.97237 1.85691 0.95699 1.91354 1.16719 1.23865 1.00731 1.06744 0.99350 1.20566 0.89621 0.93827 1.00057 0.93924 0.91803 0.92472 0.92805 0.92319 0.92537 0.74757 0.85573 0.81760 0.81361 0.88321 0.88437 0.85180 0.83908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.72 9.86 71.98 0.71 -4.01 16 2 C -0.12 -5.02 5.22 30.59 0.16 -4.86 16 3 C 0.27 12.68 1.77 44.25 0.08 12.75 16 4 H 0.02 1.07 6.37 -2.39 -0.02 1.06 16 5 C -0.62 -33.83 8.77 25.60 0.22 -33.60 16 6 H 0.04 2.42 7.83 -2.91 -0.02 2.40 16 7 C -0.02 -0.92 5.16 84.66 0.44 -0.48 16 8 N -0.93 -52.91 13.02 21.45 0.28 -52.63 16 9 Si 1.10 50.05 29.91 68.60 2.05 52.10 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 12 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 13 N -1.09 -44.00 4.86 -172.53 -0.84 -44.84 16 14 S 2.70 109.14 5.65 -56.49 -0.32 108.82 16 15 O -0.99 -40.85 17.19 -128.00 -2.20 -43.05 16 16 O -0.99 -48.16 17.11 -128.00 -2.19 -50.35 16 17 C -0.66 -22.56 5.88 22.25 0.13 -22.43 16 18 C -0.04 -1.37 8.76 22.30 0.20 -1.17 16 19 C -0.11 -2.80 10.04 22.25 0.22 -2.57 16 20 C -0.07 -1.53 9.36 22.41 0.21 -1.32 16 21 C -0.11 -2.77 6.11 22.63 0.14 -2.64 16 22 S -0.14 -2.64 22.56 -56.49 -1.27 -3.92 16 23 C -0.14 -1.30 9.15 113.37 1.04 -0.27 16 24 C -0.02 -0.48 9.27 22.41 0.21 -0.28 16 25 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 27 H 0.06 1.76 7.65 -2.39 -0.02 1.74 16 28 H 0.05 2.50 6.31 -2.38 -0.02 2.49 16 29 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.26 14.77 6.04 -92.71 -0.56 14.21 16 31 H 0.42 14.64 8.84 -96.74 -0.85 13.79 16 32 H 0.13 4.59 7.55 -2.91 -0.02 4.56 16 33 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 34 H 0.17 2.10 5.88 -2.91 -0.02 2.09 16 35 H 0.10 0.72 7.75 -2.39 -0.02 0.70 16 36 H 0.10 0.75 7.75 -2.39 -0.02 0.73 16 37 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.14 4.20 7.54 -2.91 -0.02 4.18 16 Total: -1.00 -71.78 341.09 -0.30 -72.08 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.44 Total: 22.66 kcal Atomic # 6 Polarization: -64.63 SS G_CDS: 3.75 Total: -60.87 kcal Atomic # 7 Polarization: -96.90 SS G_CDS: -0.56 Total: -97.46 kcal Atomic # 8 Polarization: -89.01 SS G_CDS: -4.39 Total: -93.40 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 2.05 Total: 52.10 kcal Atomic # 16 Polarization: 106.50 SS G_CDS: -1.59 Total: 104.90 kcal Total: -71.78 -0.30 -72.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337833613.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.228 kcal (2) G-P(sol) polarization free energy of solvation -71.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds