Wall clock time and date at job start Tue Mar 31 2020 10:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.46987 * 2 1 4 4 C 1.46497 * 119.99921 * 269.99924 * 3 2 1 5 5 C 1.50704 * 109.47282 * 270.00071 * 4 3 2 6 6 H 1.08001 * 120.00232 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00104 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00173 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99977 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47058 * 89.99854 * 9 7 5 11 11 H 1.48499 * 109.47147 * 209.99973 * 9 7 5 12 12 H 1.48500 * 109.46959 * 329.99770 * 9 7 5 13 13 C 1.34771 * 119.99864 * 90.00390 * 3 2 1 14 14 O 1.21289 * 119.99562 * 179.97438 * 13 3 2 15 15 C 1.50693 * 120.00612 * 359.97438 * 13 3 2 16 16 O 1.42902 * 109.47540 * 180.02562 * 15 13 3 17 17 C 1.35956 * 116.99736 * 180.02562 * 16 15 13 18 18 C 1.38647 * 120.06190 * 0.02562 * 17 16 15 19 19 C 1.38280 * 119.96107 * 179.97438 * 18 17 16 20 20 Cl 1.73600 * 119.96941 * 179.97438 * 19 18 17 21 21 C 1.38378 * 120.06892 * 0.02562 * 19 18 17 22 22 C 1.38250 * 120.10903 * 359.97438 * 21 19 18 23 23 C 1.38329 * 120.04653 * 0.02562 * 22 21 19 24 24 F 1.35094 * 120.03682 * 180.27707 * 23 22 21 25 25 H 1.09005 * 109.47160 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46927 * 300.00085 * 1 2 3 27 27 H 1.08997 * 109.47321 * 59.99671 * 1 2 3 28 28 H 1.08995 * 109.47199 * 239.99963 * 2 1 3 29 29 H 1.09001 * 109.47349 * 119.99834 * 2 1 3 30 30 H 1.09000 * 109.47133 * 29.99751 * 4 3 2 31 31 H 1.09001 * 109.47490 * 150.00162 * 4 3 2 32 32 H 0.96996 * 119.99980 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.46974 * 59.99851 * 15 13 3 34 34 H 1.09008 * 109.47276 * 300.00224 * 15 13 3 35 35 H 1.08005 * 120.01571 * 359.95749 * 18 17 16 36 36 H 1.07991 * 119.94457 * 180.02562 * 21 19 18 37 37 H 1.08000 * 119.97454 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1490 2.3896 -2.8780 8 7 5.3910 2.1826 -3.2579 9 14 3.0127 3.4351 -3.9293 10 1 3.1161 4.8554 -3.5082 11 1 3.4055 3.3119 -5.3560 12 1 1.6130 2.9691 -3.7592 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1599 1.1671 15 6 1.9914 1.3064 2.4723 16 8 2.3005 2.1821 3.5584 17 6 2.1273 1.6921 4.8147 18 6 1.6702 0.3960 4.9978 19 6 1.4953 -0.1004 6.2766 20 17 0.9223 -1.7230 6.5061 21 6 1.7756 0.6951 7.3735 22 6 2.2316 1.9879 7.1943 23 6 2.4082 2.4893 5.9172 24 9 2.8591 3.7506 5.7422 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.5817 1.6876 -2.0284 31 1 2.0955 3.1411 -1.1385 32 1 5.7167 2.5725 -4.0842 33 1 2.6212 0.4187 2.5302 34 1 0.9432 1.0126 2.5299 35 1 1.4506 -0.2254 4.1422 36 1 1.6387 0.3053 8.3712 37 1 2.4501 2.6068 8.0520 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344159691.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:45 Heat of formation + Delta-G solvation = -90.870707 kcal Electronic energy + Delta-G solvation = -23575.671827 eV Core-core repulsion = 19680.396886 eV Total energy + Delta-G solvation = -3895.274940 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.94740 -40.51736 -39.18380 -37.78719 -36.61455 -35.51389 -32.80463 -31.02220 -30.73230 -30.38039 -28.97448 -27.01597 -23.56079 -23.11595 -22.88460 -22.07856 -18.95308 -18.70869 -17.39550 -17.21256 -16.99493 -16.55905 -16.34663 -15.92495 -15.50801 -15.33133 -14.74448 -14.39196 -14.19333 -13.72075 -13.61670 -13.50693 -13.36949 -13.08261 -12.59517 -12.40453 -12.31507 -12.01139 -11.77951 -11.73286 -11.46695 -11.36499 -11.14288 -11.03789 -10.79472 -10.55515 -10.20910 -9.59672 -9.28935 -9.17841 -8.62609 -8.49861 -7.88236 -6.12355 -4.12059 0.56388 0.78823 1.66944 2.54713 3.03550 3.09666 3.26874 3.32548 3.35123 3.72767 3.95396 4.25499 4.36228 4.51482 4.56157 4.72215 4.85267 4.97778 5.06011 5.16600 5.20897 5.22413 5.40395 5.51321 5.56407 5.62086 5.70860 5.82751 6.03084 6.13064 6.27287 6.58676 6.84417 6.94966 7.20561 7.54925 8.04390 8.40705 8.76108 8.90651 9.46980 11.00898 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.018744 B = 0.003240 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.467058 B = 8640.191607 C = 9572.855293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.102 3.898 3 N -0.587 5.587 4 C 0.218 3.782 5 C -0.533 4.533 6 H 0.075 0.925 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.510 3.490 14 O -0.513 6.513 15 C 0.038 3.962 16 O -0.272 6.272 17 C 0.118 3.882 18 C -0.180 4.180 19 C -0.006 4.006 20 Cl -0.060 7.060 21 C -0.124 4.124 22 C -0.103 4.103 23 C 0.078 3.922 24 F -0.122 7.122 25 H 0.065 0.935 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.066 0.934 30 H 0.034 0.966 31 H 0.038 0.962 32 H 0.265 0.735 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.149 0.851 36 H 0.145 0.855 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.875 -8.347 20.117 24.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.022 4.022 3 N -0.321 5.321 4 C 0.098 3.902 5 C -0.571 4.571 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 C 0.295 3.705 14 O -0.387 6.387 15 C -0.041 4.041 16 O -0.184 6.184 17 C 0.070 3.930 18 C -0.200 4.200 19 C -0.033 4.033 20 Cl -0.031 7.031 21 C -0.143 4.143 22 C -0.123 4.123 23 C 0.057 3.943 24 F -0.101 7.101 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.109 0.891 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.167 0.833 36 H 0.162 0.838 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.480 -7.578 19.873 24.170 hybrid contribution -0.458 0.232 -0.750 0.909 sum -11.938 -7.346 19.123 23.710 Atomic orbital electron populations 1.22262 0.96464 1.01884 1.02433 1.21535 0.93624 0.83615 1.03454 1.47860 1.64278 1.13498 1.06432 1.19707 0.97560 0.93453 0.79432 1.21307 0.95265 1.33249 1.07284 0.90683 1.24850 0.95016 0.95722 0.97331 1.69891 1.15121 1.44818 1.23527 0.86854 0.81383 0.81687 0.79790 1.19820 1.21003 1.19049 1.19601 0.79633 0.87140 0.84158 1.90748 1.43874 1.17540 1.86584 1.22845 1.02070 0.93493 0.85677 1.86310 1.81575 1.39932 1.10534 1.18966 0.96847 0.91928 0.85273 1.21033 1.06287 0.94957 0.97697 1.20628 1.01296 0.87339 0.94010 1.98390 1.87186 1.20184 1.97299 1.20785 1.01882 0.93016 0.98624 1.20959 1.00001 0.96095 0.95196 1.17059 1.04432 0.81005 0.91759 1.91566 1.86453 1.35981 1.96065 0.91642 0.93058 0.91872 0.89093 0.91566 0.94841 0.94406 0.92474 0.88869 0.89100 0.83292 0.83764 0.82970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 10.24 37.16 0.38 -1.55 16 2 C 0.10 1.43 5.93 -4.04 -0.02 1.41 16 3 N -0.59 -11.52 2.46 -175.06 -0.43 -11.95 16 4 C 0.22 5.20 4.23 -5.19 -0.02 5.18 16 5 C -0.53 -15.08 9.94 -34.44 -0.34 -15.42 16 6 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 7 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 8 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 9 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 10 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 13 C 0.51 10.31 7.75 -10.99 -0.09 10.23 16 14 O -0.51 -13.04 16.08 -14.36 -0.23 -13.28 16 15 C 0.04 0.54 3.77 36.00 0.14 0.68 16 16 O -0.27 -4.49 9.53 -39.51 -0.38 -4.87 16 17 C 0.12 1.55 6.69 -39.18 -0.26 1.28 16 18 C -0.18 -1.86 8.82 -39.42 -0.35 -2.20 16 19 C -0.01 -0.05 6.32 -39.51 -0.25 -0.30 16 20 Cl -0.06 -0.49 28.95 -51.86 -1.50 -1.99 16 21 C -0.12 -0.98 9.82 -39.53 -0.39 -1.36 16 22 C -0.10 -0.90 10.02 -39.54 -0.40 -1.30 16 23 C 0.08 0.97 7.31 -39.30 -0.29 0.68 16 24 F -0.12 -1.81 17.11 2.25 0.04 -1.77 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.54 7.22 -51.93 -0.37 0.16 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 29 H 0.07 0.74 6.44 -51.93 -0.33 0.41 16 30 H 0.03 0.75 7.13 -51.93 -0.37 0.38 16 31 H 0.04 0.97 6.85 -51.93 -0.36 0.62 16 32 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.09 1.12 6.92 -51.93 -0.36 0.76 16 34 H 0.09 1.00 6.71 -51.92 -0.35 0.65 16 35 H 0.15 1.28 6.30 -52.48 -0.33 0.95 16 36 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.15 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 337.02 15.07 5.08 5.08 Total: -1.00 -34.97 337.02 -7.48 -42.45 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: -4.17 Total: -3.02 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: -1.99 Total: -0.66 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.34 Total: -38.61 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.61 Total: -18.15 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.04 Total: -1.77 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.50 Total: -1.99 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.97 -7.48 -42.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344159691.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.420 kcal (2) G-P(sol) polarization free energy of solvation -34.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds