Wall clock time and date at job start Tue Mar 31 2020 10:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.46987 * 2 1 4 4 C 1.46497 * 119.99921 * 269.99924 * 3 2 1 5 5 C 1.50704 * 109.47282 * 270.00071 * 4 3 2 6 6 H 1.08001 * 120.00232 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00104 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00173 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99977 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47058 * 89.99854 * 9 7 5 11 11 H 1.48499 * 109.47147 * 209.99973 * 9 7 5 12 12 H 1.48500 * 109.46959 * 329.99770 * 9 7 5 13 13 C 1.34771 * 119.99864 * 90.00390 * 3 2 1 14 14 O 1.21289 * 119.99562 * 179.97438 * 13 3 2 15 15 C 1.50693 * 120.00612 * 359.97438 * 13 3 2 16 16 O 1.42902 * 109.47540 * 180.02562 * 15 13 3 17 17 C 1.35956 * 116.99736 * 180.02562 * 16 15 13 18 18 C 1.38647 * 120.06190 * 0.02562 * 17 16 15 19 19 C 1.38280 * 119.96107 * 179.97438 * 18 17 16 20 20 Cl 1.73600 * 119.96941 * 179.97438 * 19 18 17 21 21 C 1.38378 * 120.06892 * 0.02562 * 19 18 17 22 22 C 1.38250 * 120.10903 * 359.97438 * 21 19 18 23 23 C 1.38329 * 120.04653 * 0.02562 * 22 21 19 24 24 F 1.35094 * 120.03682 * 180.27707 * 23 22 21 25 25 H 1.09005 * 109.47160 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46927 * 300.00085 * 1 2 3 27 27 H 1.08997 * 109.47321 * 59.99671 * 1 2 3 28 28 H 1.08995 * 109.47199 * 239.99963 * 2 1 3 29 29 H 1.09001 * 109.47349 * 119.99834 * 2 1 3 30 30 H 1.09000 * 109.47133 * 29.99751 * 4 3 2 31 31 H 1.09001 * 109.47490 * 150.00162 * 4 3 2 32 32 H 0.96996 * 119.99980 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.46974 * 59.99851 * 15 13 3 34 34 H 1.09008 * 109.47276 * 300.00224 * 15 13 3 35 35 H 1.08005 * 120.01571 * 359.95749 * 18 17 16 36 36 H 1.07991 * 119.94457 * 180.02562 * 21 19 18 37 37 H 1.08000 * 119.97454 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7038 6 1 4.3426 1.2303 -1.0962 7 6 4.1490 2.3896 -2.8780 8 7 5.3910 2.1826 -3.2579 9 14 3.0127 3.4351 -3.9293 10 1 3.1161 4.8554 -3.5082 11 1 3.4055 3.3119 -5.3560 12 1 1.6130 2.9691 -3.7592 13 6 2.2429 2.0165 1.1672 14 8 2.6477 3.1599 1.1671 15 6 1.9914 1.3064 2.4723 16 8 2.3005 2.1821 3.5584 17 6 2.1273 1.6921 4.8147 18 6 1.6702 0.3960 4.9978 19 6 1.4953 -0.1004 6.2766 20 17 0.9223 -1.7230 6.5061 21 6 1.7756 0.6951 7.3735 22 6 2.2316 1.9879 7.1943 23 6 2.4082 2.4893 5.9172 24 9 2.8591 3.7506 5.7422 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.5817 1.6876 -2.0284 31 1 2.0955 3.1411 -1.1385 32 1 5.7167 2.5725 -4.0842 33 1 2.6212 0.4187 2.5302 34 1 0.9432 1.0126 2.5299 35 1 1.4506 -0.2254 4.1422 36 1 1.6387 0.3053 8.3712 37 1 2.4501 2.6068 8.0520 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344159691.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:44 Heat of formation + Delta-G solvation = -113.183899 kcal Electronic energy + Delta-G solvation = -23576.639399 eV Core-core repulsion = 19680.396886 eV Total energy + Delta-G solvation = -3896.242513 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.93726 -41.59243 -40.50142 -38.74017 -37.34283 -37.07095 -34.90074 -32.14332 -31.77659 -31.42910 -30.26164 -28.57174 -24.80779 -24.37002 -23.73336 -23.46448 -20.22358 -19.83925 -19.15008 -18.35173 -18.20202 -17.69292 -17.58450 -17.17733 -16.64095 -16.49725 -16.12732 -15.62158 -15.44686 -15.06043 -14.75934 -14.52693 -14.37737 -14.21730 -14.11068 -13.81449 -13.46077 -13.28142 -13.19054 -12.81299 -12.59034 -12.53589 -12.37221 -12.07194 -12.01340 -11.99675 -11.80682 -11.76209 -10.85496 -10.80172 -10.03495 -9.54237 -9.35753 -8.36020 -6.41625 -0.20472 0.03015 0.97278 1.30514 1.36123 1.41862 1.45308 1.58218 2.29051 2.29252 2.47252 2.98354 3.08810 3.34493 3.59422 3.71339 3.89190 3.93636 3.94646 4.13925 4.35418 4.37631 4.46793 4.59847 4.72654 4.75726 4.85325 4.96625 4.97290 4.99898 5.00675 5.37405 5.39215 5.43904 5.55603 6.00507 6.20368 6.54076 6.60115 7.15093 7.27880 8.80881 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.018744 B = 0.003240 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.467058 B = 8640.191607 C = 9572.855293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.091 3.909 3 N -0.591 5.591 4 C 0.226 3.774 5 C -0.539 4.539 6 H 0.030 0.970 7 C 0.011 3.989 8 N -0.944 5.944 9 Si 0.947 3.053 10 H -0.279 1.279 11 H -0.274 1.274 12 H -0.235 1.235 13 C 0.497 3.503 14 O -0.582 6.582 15 C 0.050 3.950 16 O -0.314 6.314 17 C 0.091 3.909 18 C -0.175 4.175 19 C -0.008 4.008 20 Cl -0.046 7.046 21 C -0.110 4.110 22 C -0.090 4.090 23 C 0.044 3.956 24 F -0.147 7.147 25 H 0.099 0.901 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.017 0.983 32 H 0.269 0.731 33 H 0.120 0.880 34 H 0.133 0.867 35 H 0.167 0.833 36 H 0.178 0.822 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.679 -10.424 21.808 28.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.031 4.031 3 N -0.323 5.323 4 C 0.104 3.896 5 C -0.578 4.578 6 H 0.048 0.952 7 C -0.187 4.187 8 N -0.584 5.584 9 Si 0.769 3.231 10 H -0.205 1.205 11 H -0.199 1.199 12 H -0.158 1.158 13 C 0.285 3.715 14 O -0.461 6.461 15 C -0.027 4.027 16 O -0.227 6.227 17 C 0.045 3.955 18 C -0.195 4.195 19 C -0.035 4.035 20 Cl -0.017 7.017 21 C -0.128 4.128 22 C -0.109 4.109 23 C 0.024 3.976 24 F -0.125 7.125 25 H 0.118 0.882 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.035 0.965 32 H 0.078 0.922 33 H 0.138 0.862 34 H 0.150 0.850 35 H 0.184 0.816 36 H 0.195 0.805 37 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -14.325 -9.733 21.589 27.678 hybrid contribution 0.466 0.742 -1.116 1.419 sum -13.858 -8.991 20.474 26.307 Atomic orbital electron populations 1.22202 0.93585 1.04065 1.02318 1.21944 0.95926 0.80487 1.04701 1.47961 1.63817 1.15465 1.05068 1.19355 0.95063 0.93031 0.82134 1.21562 0.97092 1.32329 1.06784 0.95152 1.25850 0.96728 0.97115 0.98985 1.70044 1.17423 1.46489 1.24471 0.85736 0.80622 0.78898 0.77833 1.20496 1.19863 1.15766 1.20668 0.78038 0.86653 0.86148 1.90702 1.46963 1.20680 1.87802 1.22784 1.04955 0.92591 0.82366 1.86237 1.82842 1.41518 1.12075 1.19187 0.99026 0.93388 0.83948 1.21167 1.05457 0.93820 0.99027 1.20789 1.00750 0.88019 0.93923 1.98402 1.86943 1.19160 1.97205 1.21195 0.99638 0.92141 0.99854 1.21280 0.98496 0.96690 0.94421 1.17629 1.06161 0.80499 0.93296 1.91496 1.87083 1.37638 1.96319 0.88214 0.91920 0.93310 0.90185 0.88135 0.92526 0.96534 0.92219 0.86239 0.85000 0.81550 0.80512 0.80225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 10.24 71.98 0.74 -2.36 16 2 C 0.09 2.37 5.93 86.38 0.51 2.88 16 3 N -0.59 -23.15 2.46 -826.17 -2.03 -25.18 16 4 C 0.23 10.91 4.23 85.63 0.36 11.27 16 5 C -0.54 -31.73 9.94 25.60 0.25 -31.48 16 6 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 7 C 0.01 0.68 5.47 84.65 0.46 1.14 16 8 N -0.94 -60.00 13.96 21.45 0.30 -59.71 16 9 Si 0.95 44.52 27.47 68.60 1.88 46.40 16 10 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 11 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.23 -9.77 6.54 99.48 0.65 -9.12 16 13 C 0.50 20.47 7.75 87.66 0.68 21.14 16 14 O -0.58 -31.23 16.08 15.98 0.26 -30.98 16 15 C 0.05 1.40 3.77 71.23 0.27 1.67 16 16 O -0.31 -10.51 9.53 -74.02 -0.71 -11.22 16 17 C 0.09 2.33 6.69 22.53 0.15 2.48 16 18 C -0.18 -3.17 8.82 22.38 0.20 -2.97 16 19 C -0.01 -0.11 6.32 22.31 0.14 0.03 16 20 Cl -0.05 -0.59 28.95 -2.72 -0.08 -0.67 16 21 C -0.11 -1.33 9.82 22.31 0.22 -1.11 16 22 C -0.09 -1.37 10.02 22.29 0.22 -1.15 16 23 C 0.04 1.09 7.31 22.45 0.16 1.25 16 24 F -0.15 -4.54 17.11 44.97 0.77 -3.77 16 25 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 26 H 0.06 1.06 7.22 -2.39 -0.02 1.04 16 27 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.08 2.27 8.07 -2.39 -0.02 2.25 16 29 H 0.10 1.91 6.44 -2.39 -0.02 1.90 16 30 H 0.06 2.46 7.13 -2.39 -0.02 2.45 16 31 H 0.02 0.87 6.85 -2.39 -0.02 0.86 16 32 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 33 H 0.12 2.61 6.92 -2.39 -0.02 2.59 16 34 H 0.13 2.49 6.71 -2.38 -0.02 2.47 16 35 H 0.17 2.25 6.30 -2.91 -0.02 2.24 16 36 H 0.18 1.01 8.06 -2.91 -0.02 0.98 16 37 H 0.18 1.64 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -83.77 337.02 5.82 -77.95 By element: Atomic # 1 Polarization: 3.31 SS G_CDS: 1.05 Total: 4.36 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 4.37 Total: 2.80 kcal Atomic # 7 Polarization: -83.15 SS G_CDS: -1.73 Total: -84.88 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -0.45 Total: -42.20 kcal Atomic # 9 Polarization: -4.54 SS G_CDS: 0.77 Total: -3.77 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.40 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.08 Total: -0.67 kcal Total: -83.77 5.82 -77.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344159691.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.229 kcal (2) G-P(sol) polarization free energy of solvation -83.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds