Wall clock time and date at job start Tue Mar 31 2020 10:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36806 * 119.99843 * 2 1 4 4 H 1.08000 * 119.99584 * 221.90236 * 3 2 1 5 5 C 1.39083 * 120.00280 * 41.90000 * 3 2 1 6 6 N 1.31342 * 119.99469 * 7.03167 * 5 3 2 7 7 Si 1.86795 * 119.99989 * 187.03385 * 5 3 2 8 8 H 1.48505 * 109.47108 * 90.00244 * 7 5 3 9 9 H 1.48498 * 109.47077 * 210.00000 * 7 5 3 10 10 H 1.48498 * 109.47097 * 330.00114 * 7 5 3 11 11 C 1.34770 * 120.00342 * 179.97438 * 2 1 3 12 12 O 1.21629 * 119.99929 * 355.53493 * 11 2 1 13 13 C 1.47549 * 120.00380 * 175.52922 * 11 2 1 14 14 N 1.33077 * 120.17288 * 5.68786 * 13 11 2 15 15 C 1.31748 * 120.00615 * 179.97438 * 14 13 11 16 16 C 1.38830 * 120.35863 * 359.97438 * 15 14 13 17 17 N 1.32018 * 120.35103 * 359.97438 * 16 15 14 18 18 C 1.32873 * 119.99298 * 0.02562 * 17 16 15 19 19 S 1.76196 * 120.18022 * 180.02562 * 18 17 16 20 20 C 1.76196 * 100.00182 * 354.82783 * 19 18 17 21 21 C 1.38948 * 120.07749 * 274.58254 * 20 19 18 22 22 C 1.38090 * 119.92066 * 179.78758 * 21 20 19 23 23 C 1.38305 * 120.07576 * 0.46737 * 22 21 20 24 24 C 1.38300 * 120.15740 * 359.78752 * 23 22 21 25 25 C 1.38087 * 120.07487 * 359.97438 * 24 23 22 26 26 H 1.08996 * 109.47442 * 273.99756 * 1 2 3 27 27 H 1.09004 * 109.47026 * 33.99635 * 1 2 3 28 28 H 1.08996 * 109.46920 * 153.98945 * 1 2 3 29 29 H 0.97004 * 119.99487 * 180.02562 * 6 5 3 30 30 H 1.08000 * 119.82105 * 180.27642 * 15 14 13 31 31 H 1.07990 * 119.82211 * 180.02562 * 16 15 14 32 32 H 1.08004 * 120.03723 * 0.02562 * 21 20 19 33 33 H 1.07997 * 119.96249 * 180.23471 * 22 21 20 34 34 H 1.07994 * 119.91945 * 179.76129 * 23 22 21 35 35 H 1.07995 * 119.96567 * 179.97438 * 24 23 22 36 36 H 1.07997 * 120.03864 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1490 1.1848 0.0000 4 1 3.0219 1.3043 -0.6247 5 6 1.7203 2.2353 0.8044 6 7 0.7458 2.0482 1.6648 7 14 2.5306 3.9123 0.6609 8 1 1.8120 4.7240 -0.3541 9 1 2.4767 4.6021 1.9749 10 1 3.9470 3.7440 0.2479 11 6 2.1389 -1.1671 0.0005 12 8 1.5336 -2.2188 0.0830 13 6 3.6111 -1.1691 -0.0991 14 7 4.2846 -0.0216 -0.0757 15 6 5.5991 -0.0272 -0.1643 16 6 6.2892 -1.2261 -0.2819 17 7 5.6354 -2.3727 -0.3055 18 6 4.3096 -2.3833 -0.2171 19 16 3.4320 -3.9108 -0.2474 20 6 4.7632 -5.0224 -0.5589 21 6 5.1773 -5.2648 -1.8629 22 6 6.2238 -6.1332 -2.1030 23 6 6.8531 -6.7687 -1.0480 24 6 6.4400 -6.5338 0.2508 25 6 5.3974 -5.6629 0.4985 26 1 -0.3634 0.0716 1.0251 27 1 -0.3633 0.8520 -0.5746 28 1 -0.3633 -0.9236 -0.4507 29 1 0.4465 2.7810 2.2255 30 1 6.1430 0.9055 -0.1406 31 1 7.3668 -1.2206 -0.3535 32 1 4.6839 -4.7717 -2.6874 33 1 6.5488 -6.3192 -3.1159 34 1 7.6687 -7.4504 -1.2389 35 1 6.9333 -7.0321 1.0722 36 1 5.0751 -5.4802 1.5129 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344883892.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:31 Heat of formation + Delta-G solvation = 68.110590 kcal Electronic energy + Delta-G solvation = -23104.712039 eV Core-core repulsion = 19681.436727 eV Total energy + Delta-G solvation = -3423.275312 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.078 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.42391 -38.78117 -38.15810 -34.94331 -33.70220 -31.56763 -31.11184 -30.87851 -30.73334 -26.72349 -25.29701 -24.21577 -23.61012 -22.48155 -22.46667 -19.71389 -18.18103 -17.92261 -17.18103 -16.82112 -15.64271 -15.53424 -14.98115 -14.86285 -14.56815 -14.42449 -14.32803 -13.80888 -13.55277 -13.37239 -13.21810 -12.75690 -12.42594 -11.87689 -11.59240 -11.50627 -11.26244 -11.19798 -11.13336 -10.95356 -10.83518 -10.43077 -10.35319 -10.13395 -9.40388 -9.16363 -9.01742 -8.86384 -8.56165 -8.23886 -7.57555 -7.09515 -6.40149 -4.05428 0.94555 1.05770 1.47853 1.56083 2.19389 2.72625 3.11032 3.19064 3.23132 3.62579 3.86359 4.04892 4.39250 4.48407 4.78798 4.80092 4.93482 4.98378 5.08510 5.10191 5.24783 5.49550 5.55834 5.56858 5.66031 5.83039 6.05259 6.06117 6.40049 6.48363 6.50442 6.54810 6.74934 6.79173 6.98113 7.21478 7.52487 7.62001 7.83277 8.22443 8.43704 9.00034 9.31882 9.75674 10.60874 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.023892 B = 0.004087 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.648730 B = 6849.786912 C = 7631.702607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.400 5.400 3 C -0.309 4.309 4 H 0.124 0.876 5 C 0.040 3.960 6 N -0.863 5.863 7 Si 0.925 3.075 8 H -0.277 1.277 9 H -0.284 1.284 10 H -0.264 1.264 11 C 0.490 3.510 12 O -0.582 6.582 13 C 0.082 3.918 14 N -0.359 5.359 15 C 0.022 3.978 16 C 0.052 3.948 17 N -0.444 5.444 18 C 0.069 3.931 19 S 0.154 5.846 20 C -0.165 4.165 21 C -0.060 4.060 22 C -0.134 4.134 23 C -0.101 4.101 24 C -0.134 4.134 25 C -0.060 4.060 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.271 0.729 30 H 0.164 0.836 31 H 0.162 0.838 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.570 -8.958 -4.432 14.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.114 5.114 3 C -0.439 4.439 4 H 0.141 0.859 5 C -0.166 4.166 6 N -0.500 5.500 7 Si 0.752 3.248 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.188 1.188 11 C 0.279 3.721 12 O -0.471 6.471 13 C -0.066 4.066 14 N -0.076 5.076 15 C -0.143 4.143 16 C -0.113 4.113 17 N -0.162 5.162 18 C -0.182 4.182 19 S 0.398 5.602 20 C -0.275 4.275 21 C -0.080 4.080 22 C -0.154 4.154 23 C -0.119 4.119 24 C -0.154 4.154 25 C -0.080 4.080 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.181 0.819 31 H 0.179 0.821 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 8.811 -9.673 -4.093 13.710 hybrid contribution 2.088 1.499 0.002 2.571 sum 10.899 -8.174 -4.091 14.225 Atomic orbital electron populations 1.21533 0.80619 0.99270 1.02490 1.43408 1.05636 1.04860 1.57524 1.20379 1.11754 0.88181 1.23565 0.85891 1.25635 0.96215 1.00550 0.94245 1.69894 1.26703 1.32903 1.20485 0.85941 0.80083 0.81182 0.77625 1.20308 1.20949 1.18837 1.17580 0.84484 0.84934 0.85133 1.90533 1.66704 1.30784 1.59058 1.22061 0.96582 0.87870 1.00092 1.69632 1.06703 1.26102 1.05154 1.23997 0.92108 0.99192 0.98968 1.23738 1.01131 0.89273 0.97132 1.68895 1.05913 1.29039 1.12400 1.24565 0.94005 0.99738 0.99926 1.86344 0.99821 0.88266 1.85755 1.22946 1.04717 1.04029 0.95841 1.21465 0.95085 0.95621 0.95843 1.21131 0.97042 0.98259 0.98964 1.21198 0.99034 0.98747 0.92952 1.21138 0.97905 0.99519 0.96845 1.21479 0.93781 0.94277 0.98478 0.91290 0.92582 0.93442 0.91908 0.81886 0.82115 0.85899 0.86152 0.86302 0.86119 0.85729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.47 9.01 59.85 0.54 3.01 16 2 N -0.40 -10.29 2.91 -123.39 -0.36 -10.64 16 3 C -0.31 -7.87 7.75 -15.02 -0.12 -7.99 16 4 H 0.12 3.07 5.58 -52.49 -0.29 2.78 16 5 C 0.04 1.01 5.30 -17.45 -0.09 0.92 16 6 N -0.86 -22.71 11.54 55.50 0.64 -22.07 16 7 Si 0.93 19.46 29.56 -169.99 -5.02 14.44 16 8 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 9 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 10 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 11 C 0.49 12.36 7.58 -12.47 -0.09 12.26 16 12 O -0.58 -14.96 13.36 5.25 0.07 -14.89 16 13 C 0.08 1.86 6.67 -82.65 -0.55 1.31 16 14 N -0.36 -7.70 6.42 -9.48 -0.06 -7.76 16 15 C 0.02 0.37 11.21 -17.37 -0.19 0.18 16 16 C 0.05 0.81 11.22 -17.25 -0.19 0.61 16 17 N -0.44 -8.07 9.33 -11.46 -0.11 -8.17 16 18 C 0.07 1.42 6.99 -16.22 -0.11 1.30 16 19 S 0.15 2.93 18.96 -107.50 -2.04 0.89 16 20 C -0.17 -2.63 4.63 -39.05 -0.18 -2.81 16 21 C -0.06 -0.86 9.79 -39.37 -0.39 -1.24 16 22 C -0.13 -1.60 10.04 -39.61 -0.40 -2.00 16 23 C -0.10 -1.12 10.04 -39.53 -0.40 -1.52 16 24 C -0.13 -1.60 10.04 -39.61 -0.40 -2.00 16 25 C -0.06 -0.86 9.79 -39.37 -0.39 -1.24 16 26 H 0.07 1.73 7.21 -51.93 -0.37 1.36 16 27 H 0.06 1.28 8.07 -51.93 -0.42 0.86 16 28 H 0.05 1.06 7.37 -51.93 -0.38 0.68 16 29 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 30 H 0.16 2.13 8.06 -52.49 -0.42 1.71 16 31 H 0.16 1.81 8.06 -52.49 -0.42 1.38 16 32 H 0.12 1.70 8.06 -52.48 -0.42 1.28 16 33 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 36 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 326.43 15.07 4.92 4.92 Total: -1.00 -30.24 326.43 -8.48 -38.73 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -3.56 Total: 3.76 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -2.96 Total: 0.80 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 0.11 Total: -48.64 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: 0.07 Total: -14.89 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -2.04 Total: 0.89 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.24 -8.48 -38.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344883892.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.840 kcal (2) G-P(sol) polarization free energy of solvation -30.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds