Wall clock time and date at job start Tue Mar 31 2020 10:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36806 * 119.99843 * 2 1 4 4 H 1.08000 * 119.99584 * 221.90236 * 3 2 1 5 5 C 1.39083 * 120.00280 * 41.90000 * 3 2 1 6 6 N 1.31342 * 119.99469 * 7.03167 * 5 3 2 7 7 Si 1.86795 * 119.99989 * 187.03385 * 5 3 2 8 8 H 1.48505 * 109.47108 * 90.00244 * 7 5 3 9 9 H 1.48498 * 109.47077 * 210.00000 * 7 5 3 10 10 H 1.48498 * 109.47097 * 330.00114 * 7 5 3 11 11 C 1.34770 * 120.00342 * 179.97438 * 2 1 3 12 12 O 1.21629 * 119.99929 * 355.53493 * 11 2 1 13 13 C 1.47549 * 120.00380 * 175.52922 * 11 2 1 14 14 N 1.33077 * 120.17288 * 5.68786 * 13 11 2 15 15 C 1.31748 * 120.00615 * 179.97438 * 14 13 11 16 16 C 1.38830 * 120.35863 * 359.97438 * 15 14 13 17 17 N 1.32018 * 120.35103 * 359.97438 * 16 15 14 18 18 C 1.32873 * 119.99298 * 0.02562 * 17 16 15 19 19 S 1.76196 * 120.18022 * 180.02562 * 18 17 16 20 20 C 1.76196 * 100.00182 * 354.82783 * 19 18 17 21 21 C 1.38948 * 120.07749 * 274.58254 * 20 19 18 22 22 C 1.38090 * 119.92066 * 179.78758 * 21 20 19 23 23 C 1.38305 * 120.07576 * 0.46737 * 22 21 20 24 24 C 1.38300 * 120.15740 * 359.78752 * 23 22 21 25 25 C 1.38087 * 120.07487 * 359.97438 * 24 23 22 26 26 H 1.08996 * 109.47442 * 273.99756 * 1 2 3 27 27 H 1.09004 * 109.47026 * 33.99635 * 1 2 3 28 28 H 1.08996 * 109.46920 * 153.98945 * 1 2 3 29 29 H 0.97004 * 119.99487 * 180.02562 * 6 5 3 30 30 H 1.08000 * 119.82105 * 180.27642 * 15 14 13 31 31 H 1.07990 * 119.82211 * 180.02562 * 16 15 14 32 32 H 1.08004 * 120.03723 * 0.02562 * 21 20 19 33 33 H 1.07997 * 119.96249 * 180.23471 * 22 21 20 34 34 H 1.07994 * 119.91945 * 179.76129 * 23 22 21 35 35 H 1.07995 * 119.96567 * 179.97438 * 24 23 22 36 36 H 1.07997 * 120.03864 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1490 1.1848 0.0000 4 1 3.0219 1.3043 -0.6247 5 6 1.7203 2.2353 0.8044 6 7 0.7458 2.0482 1.6648 7 14 2.5306 3.9123 0.6609 8 1 1.8120 4.7240 -0.3541 9 1 2.4767 4.6021 1.9749 10 1 3.9470 3.7440 0.2479 11 6 2.1389 -1.1671 0.0005 12 8 1.5336 -2.2188 0.0830 13 6 3.6111 -1.1691 -0.0991 14 7 4.2846 -0.0216 -0.0757 15 6 5.5991 -0.0272 -0.1643 16 6 6.2892 -1.2261 -0.2819 17 7 5.6354 -2.3727 -0.3055 18 6 4.3096 -2.3833 -0.2171 19 16 3.4320 -3.9108 -0.2474 20 6 4.7632 -5.0224 -0.5589 21 6 5.1773 -5.2648 -1.8629 22 6 6.2238 -6.1332 -2.1030 23 6 6.8531 -6.7687 -1.0480 24 6 6.4400 -6.5338 0.2508 25 6 5.3974 -5.6629 0.4985 26 1 -0.3634 0.0716 1.0251 27 1 -0.3633 0.8520 -0.5746 28 1 -0.3633 -0.9236 -0.4507 29 1 0.4465 2.7810 2.2255 30 1 6.1430 0.9055 -0.1406 31 1 7.3668 -1.2206 -0.3535 32 1 4.6839 -4.7717 -2.6874 33 1 6.5488 -6.3192 -3.1159 34 1 7.6687 -7.4504 -1.2389 35 1 6.9333 -7.0321 1.0722 36 1 5.0751 -5.4802 1.5129 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344883892.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:31 Heat of formation + Delta-G solvation = 50.517934 kcal Electronic energy + Delta-G solvation = -23105.474914 eV Core-core repulsion = 19681.436727 eV Total energy + Delta-G solvation = -3424.038186 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.078 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.95279 -40.04780 -39.70713 -36.82250 -35.21518 -33.44181 -32.57475 -31.86559 -31.78440 -28.56164 -27.07391 -25.72183 -25.19289 -23.53739 -23.46448 -21.51998 -19.85517 -19.28844 -18.72438 -17.97829 -17.42402 -16.73512 -16.48772 -16.36305 -16.16588 -15.84532 -15.76163 -15.24584 -15.08673 -14.67998 -14.33671 -14.02804 -13.78722 -13.69199 -13.24297 -13.06329 -12.94880 -12.70869 -12.65955 -12.38468 -12.06698 -12.04325 -11.89021 -11.69647 -10.97148 -10.86975 -10.55041 -9.91194 -9.85725 -9.76322 -9.40309 -8.61831 -8.24121 -5.99794 -0.54102 -0.08529 0.10844 0.49063 0.89952 1.42458 1.46863 1.48841 1.61718 1.95873 2.33036 2.69500 2.85011 2.85809 3.12423 3.43791 3.51178 3.66411 3.97289 4.10908 4.20843 4.22781 4.32538 4.44695 4.56441 4.58961 4.73933 4.84098 4.85656 5.10220 5.23171 5.31248 5.45619 5.46392 5.54321 5.65938 5.95131 6.03041 6.19496 6.52082 6.77455 7.13416 7.44678 7.87523 8.78101 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.023892 B = 0.004087 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.648730 B = 6849.786912 C = 7631.702607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.116 3.884 2 N -0.424 5.424 3 C -0.324 4.324 4 H 0.127 0.873 5 C -0.005 4.005 6 N -0.906 5.906 7 Si 0.990 3.010 8 H -0.273 1.273 9 H -0.288 1.288 10 H -0.249 1.249 11 C 0.484 3.516 12 O -0.600 6.600 13 C 0.042 3.958 14 N -0.386 5.386 15 C 0.024 3.976 16 C 0.083 3.917 17 N -0.449 5.449 18 C 0.068 3.932 19 S 0.105 5.895 20 C -0.176 4.176 21 C -0.076 4.076 22 C -0.130 4.130 23 C -0.090 4.090 24 C -0.130 4.130 25 C -0.077 4.077 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.269 0.731 30 H 0.207 0.793 31 H 0.218 0.782 32 H 0.117 0.883 33 H 0.150 0.850 34 H 0.158 0.842 35 H 0.150 0.850 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.267 -9.785 -5.421 18.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.139 5.139 3 C -0.453 4.453 4 H 0.144 0.856 5 C -0.207 4.207 6 N -0.544 5.544 7 Si 0.813 3.187 8 H -0.198 1.198 9 H -0.214 1.214 10 H -0.172 1.172 11 C 0.273 3.727 12 O -0.489 6.489 13 C -0.104 4.104 14 N -0.102 5.102 15 C -0.143 4.143 16 C -0.084 4.084 17 N -0.167 5.167 18 C -0.181 4.181 19 S 0.351 5.649 20 C -0.287 4.287 21 C -0.097 4.097 22 C -0.150 4.150 23 C -0.108 4.108 24 C -0.150 4.150 25 C -0.098 4.098 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.224 0.776 31 H 0.234 0.766 32 H 0.135 0.865 33 H 0.167 0.833 34 H 0.176 0.824 35 H 0.168 0.832 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 13.457 -10.542 -5.093 17.837 hybrid contribution 0.957 1.482 0.242 1.781 sum 14.414 -9.060 -4.851 17.703 Atomic orbital electron populations 1.21343 0.80742 0.99432 1.01160 1.43614 1.05930 1.05342 1.59034 1.20573 1.12174 0.88313 1.24249 0.85594 1.26486 0.96687 1.03893 0.93654 1.70028 1.28622 1.33810 1.21920 0.84971 0.79872 0.76616 0.77269 1.19806 1.21360 1.17189 1.18140 0.86136 0.84552 0.83880 1.90510 1.68056 1.31376 1.58964 1.21648 0.95418 0.89417 1.03945 1.69410 1.09192 1.26107 1.05532 1.24749 0.90564 1.01632 0.97372 1.24693 1.03419 0.87877 0.92376 1.69028 1.04689 1.30281 1.12671 1.24539 0.94846 0.99216 0.99502 1.86355 1.03104 0.89766 1.85650 1.22673 1.04523 1.04261 0.97226 1.21536 0.96307 0.96896 0.94939 1.21475 0.95676 0.96918 1.00905 1.21673 0.99096 0.98016 0.92045 1.21483 0.96653 0.98359 0.98481 1.21565 0.94916 0.95384 0.97889 0.93379 0.92405 0.93026 0.92122 0.77619 0.76559 0.86512 0.83258 0.82446 0.83218 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.90 9.01 127.77 1.15 7.05 16 2 N -0.42 -22.91 2.91 -662.54 -1.93 -24.84 16 3 C -0.32 -17.01 7.75 84.12 0.65 -16.36 16 4 H 0.13 6.38 5.58 -2.91 -0.02 6.36 16 5 C -0.01 -0.27 5.30 84.97 0.45 0.18 16 6 N -0.91 -49.71 11.54 21.69 0.25 -49.46 16 7 Si 0.99 40.10 29.56 68.60 2.03 42.13 16 8 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 9 H -0.29 -11.69 7.11 99.48 0.71 -10.99 16 10 H -0.25 -9.30 7.11 99.48 0.71 -8.59 16 11 C 0.48 25.68 7.58 86.70 0.66 26.33 16 12 O -0.60 -32.76 13.36 -4.12 -0.06 -32.82 16 13 C 0.04 1.95 6.67 41.98 0.28 2.23 16 14 N -0.39 -16.31 6.42 -183.91 -1.18 -17.49 16 15 C 0.02 0.71 11.21 84.85 0.95 1.66 16 16 C 0.08 2.23 11.22 84.81 0.95 3.18 16 17 N -0.45 -15.36 9.33 -190.18 -1.77 -17.14 16 18 C 0.07 2.80 6.99 85.11 0.60 3.40 16 19 S 0.10 4.16 18.96 -56.49 -1.07 3.09 16 20 C -0.18 -5.53 4.63 22.61 0.10 -5.43 16 21 C -0.08 -2.08 9.79 22.40 0.22 -1.86 16 22 C -0.13 -2.63 10.04 22.25 0.22 -2.41 16 23 C -0.09 -1.57 10.04 22.30 0.22 -1.35 16 24 C -0.13 -2.63 10.04 22.25 0.22 -2.41 16 25 C -0.08 -2.10 9.79 22.40 0.22 -1.89 16 26 H 0.05 2.59 7.21 -2.39 -0.02 2.58 16 27 H 0.06 2.81 8.07 -2.39 -0.02 2.79 16 28 H 0.05 2.48 7.37 -2.39 -0.02 2.46 16 29 H 0.27 13.97 8.31 -92.70 -0.77 13.20 16 30 H 0.21 4.32 8.06 -2.91 -0.02 4.30 16 31 H 0.22 3.36 8.06 -2.92 -0.02 3.34 16 32 H 0.12 3.22 8.06 -2.91 -0.02 3.19 16 33 H 0.15 2.13 8.06 -2.91 -0.02 2.10 16 34 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 35 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 36 H 0.12 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -70.85 326.43 4.29 -66.56 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 1.12 Total: 17.64 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 6.90 Total: 12.33 kcal Atomic # 7 Polarization: -104.29 SS G_CDS: -4.63 Total: -108.92 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -0.06 Total: -32.82 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -1.07 Total: 3.09 kcal Total: -70.85 4.29 -66.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344883892.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.074 kcal (2) G-P(sol) polarization free energy of solvation -70.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds