Wall clock time and date at job start Tue Mar 31 2020 11:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 119.99891 * 2 1 4 4 H 1.48502 * 109.47230 * 270.00227 * 3 2 1 5 5 H 1.48505 * 109.47283 * 30.00162 * 3 2 1 6 6 H 1.48497 * 109.47163 * 150.00300 * 3 2 1 7 7 C 1.37874 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99858 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00048 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46946 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46650 * 179.97438 * 10 9 7 12 12 S 1.81402 * 109.46775 * 179.97438 * 11 10 9 13 13 O 1.42094 * 110.54236 * 68.37781 * 12 11 10 14 14 O 1.42101 * 110.54114 * 291.62528 * 12 11 10 15 15 N 1.65599 * 104.44831 * 180.02562 * 12 11 10 16 16 C 1.46501 * 119.99961 * 64.99829 * 15 12 11 17 17 C 1.53777 * 113.61486 * 214.99631 * 16 15 12 18 18 C 1.53778 * 87.08479 * 220.02273 * 17 16 15 19 19 C 1.52997 * 113.61679 * 139.98340 * 18 17 16 20 20 F 1.39905 * 109.47157 * 61.52895 * 19 18 17 21 21 F 1.39900 * 109.47010 * 301.53286 * 19 18 17 22 22 F 1.39897 * 109.47422 * 181.52978 * 19 18 17 23 23 C 1.53783 * 87.17189 * 25.39160 * 18 17 16 24 24 H 0.97006 * 120.00593 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46703 * 59.99857 * 9 7 2 26 26 H 1.08997 * 109.46783 * 299.99675 * 9 7 2 27 27 H 1.08995 * 109.46892 * 59.99937 * 10 9 7 28 28 H 1.09001 * 109.46535 * 299.99766 * 10 9 7 29 29 H 1.09003 * 109.47022 * 60.00509 * 11 10 9 30 30 H 1.08997 * 109.47141 * 299.99841 * 11 10 9 31 31 H 0.97003 * 120.00237 * 245.00000 * 15 12 11 32 32 H 1.08999 * 112.85444 * 346.20123 * 16 15 12 33 33 H 1.09006 * 113.61080 * 105.47223 * 17 16 15 34 34 H 1.08997 * 113.61849 * 334.57714 * 17 16 15 35 35 H 1.09007 * 113.61285 * 270.80692 * 18 17 16 36 36 H 1.09000 * 113.61048 * 89.16040 * 23 18 17 37 37 H 1.09003 * 113.61260 * 220.06009 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5516 -2.6364 -0.0001 12 16 6.1563 -4.3467 0.0005 13 8 5.8602 -4.9807 -1.2362 14 8 5.8602 -4.9798 1.2377 15 7 7.8059 -4.2017 0.0011 16 6 8.4882 -3.6031 1.1511 17 6 9.7284 -2.7775 0.7703 18 6 10.4117 -3.3778 2.0102 19 6 11.8789 -3.7475 1.7828 20 9 12.6047 -2.5967 1.4572 21 9 11.9704 -4.6689 0.7341 22 9 12.4030 -4.3149 2.9492 23 6 9.4478 -4.5680 1.8711 24 1 -0.4851 0.8400 0.0004 25 1 3.8745 -0.6807 0.8905 26 1 3.8751 -0.6796 -0.8895 27 1 3.6586 -3.1501 -0.8903 28 1 3.6579 -3.1504 0.8897 29 1 5.9149 -2.1227 0.8900 30 1 5.9148 -2.1225 -0.8901 31 1 8.3205 -4.5130 -0.7600 32 1 7.8066 -3.0824 1.8237 33 1 9.5729 -1.7006 0.8358 34 1 10.1847 -3.0837 -0.1710 35 1 10.2579 -2.7952 2.9186 36 1 9.8274 -5.3647 1.2314 37 1 9.0663 -4.9345 2.8242 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344943875.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:14 Heat of formation + Delta-G solvation = -222.650022 kcal Electronic energy + Delta-G solvation = -24314.515560 eV Core-core repulsion = 19997.173511 eV Total energy + Delta-G solvation = -4317.342049 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.090 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.46847 -47.97886 -47.94423 -39.71984 -37.00563 -35.88684 -34.87342 -33.62782 -32.26034 -28.44331 -28.01891 -26.38549 -23.68077 -23.34514 -20.81451 -20.49960 -19.50659 -18.84104 -18.73136 -18.12467 -17.55313 -16.94091 -16.22139 -16.02113 -15.79292 -15.22610 -14.87741 -14.74197 -14.39232 -14.35278 -14.23812 -14.13168 -14.10464 -13.53004 -13.07479 -12.97254 -12.92404 -12.69685 -12.40241 -12.20180 -12.01288 -11.94064 -11.67395 -11.57028 -11.50050 -11.14855 -11.02445 -10.98124 -10.14807 -10.01111 -9.88505 -9.48557 -9.29890 -8.62496 -6.11879 -4.11543 0.28892 2.32783 2.68360 3.23410 3.28856 3.31026 3.32394 3.37151 3.56178 3.76946 3.96905 4.12643 4.24574 4.27006 4.31911 4.36698 4.64421 4.90617 4.97558 5.10403 5.10809 5.18164 5.21826 5.31629 5.43723 5.67119 5.84655 6.07918 6.20082 6.60985 6.68766 7.07390 7.21385 7.67038 8.43752 8.92475 9.48991 11.01417 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.020138 B = 0.002907 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.085966 B = 9628.670132 C =10547.246618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.528 4.528 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.098 4.098 11 C -0.615 4.615 12 S 2.599 3.401 13 O -0.959 6.959 14 O -0.956 6.956 15 N -1.110 6.110 16 C 0.136 3.864 17 C -0.135 4.135 18 C -0.169 4.169 19 C 0.462 3.538 20 F -0.183 7.183 21 F -0.182 7.182 22 F -0.184 7.184 23 C -0.140 4.140 24 H 0.264 0.736 25 H 0.020 0.980 26 H 0.016 0.984 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.126 0.874 30 H 0.130 0.870 31 H 0.418 0.582 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.139 0.861 36 H 0.103 0.897 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.943 -6.033 3.508 26.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.566 4.566 8 H 0.093 0.907 9 C -0.043 4.043 10 C -0.138 4.138 11 C -0.747 4.747 12 S 2.695 3.305 13 O -0.949 6.949 14 O -0.946 6.946 15 N -0.866 5.866 16 C 0.027 3.973 17 C -0.175 4.175 18 C -0.189 4.189 19 C 0.407 3.593 20 F -0.165 7.165 21 F -0.163 7.163 22 F -0.165 7.165 23 C -0.180 4.180 24 H 0.074 0.926 25 H 0.038 0.962 26 H 0.034 0.966 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.144 0.856 30 H 0.149 0.851 31 H 0.252 0.748 32 H 0.141 0.859 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.157 0.843 36 H 0.122 0.878 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 25.230 -6.714 3.649 26.362 hybrid contribution 1.108 1.526 -0.330 1.914 sum 26.338 -5.188 3.320 27.048 Atomic orbital electron populations 1.69906 1.06304 1.27027 1.50591 1.25028 0.94757 0.99187 0.94437 0.86771 0.80278 0.83618 0.78537 1.20217 1.21252 1.19089 1.21133 0.89250 0.94789 1.51457 0.90719 1.19528 0.97360 0.90675 0.96707 1.21323 0.86554 1.03000 1.02889 1.30620 1.09613 1.23260 1.11186 1.05394 0.72696 0.78051 0.74399 1.93597 1.82569 1.73609 1.45136 1.93594 1.82818 1.72674 1.45529 1.55764 1.26732 1.77123 1.26972 1.22102 0.93339 0.94149 0.87681 1.23478 0.95448 1.01810 0.96740 1.23890 0.88075 1.03046 1.03888 1.20359 0.90538 0.74523 0.73846 1.93194 1.80544 1.50031 1.92689 1.93166 1.96853 1.67537 1.58758 1.93193 1.88786 1.85537 1.48976 1.23617 0.94759 0.96286 1.03308 0.92584 0.96200 0.96601 0.90937 0.90903 0.85574 0.85143 0.74817 0.85918 0.88651 0.88032 0.84289 0.87819 0.88668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 20.96 27.47 -169.99 -4.67 16.29 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -5.96 6.54 56.52 0.37 -5.59 16 7 C -0.53 -14.73 9.66 -34.44 -0.33 -15.06 16 8 H 0.07 2.24 7.99 -52.49 -0.42 1.82 16 9 C 0.00 -0.09 4.04 -27.88 -0.11 -0.20 16 10 C -0.10 -1.81 5.16 -26.73 -0.14 -1.95 16 11 C -0.62 -7.89 6.07 37.16 0.23 -7.66 16 12 S 2.60 32.71 5.40 -107.50 -0.58 32.13 16 13 O -0.96 -15.34 18.08 -57.54 -1.04 -16.38 16 14 O -0.96 -14.91 17.81 -57.54 -1.02 -15.94 16 15 N -1.11 -9.21 5.68 -4.12 -0.02 -9.23 16 16 C 0.14 0.91 4.23 -67.03 -0.28 0.63 16 17 C -0.14 -0.70 7.24 -25.92 -0.19 -0.89 16 18 C -0.17 -0.91 3.79 -89.81 -0.34 -1.25 16 19 C 0.46 3.34 3.01 37.16 0.11 3.45 16 20 F -0.18 -1.48 17.20 2.25 0.04 -1.44 16 21 F -0.18 -1.47 15.74 2.25 0.04 -1.43 16 22 F -0.18 -1.52 17.32 2.25 0.04 -1.48 16 23 C -0.14 -0.89 7.34 -25.82 -0.19 -1.08 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 26 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 27 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.13 1.31 7.83 -51.92 -0.41 0.90 16 30 H 0.13 1.43 8.14 -51.93 -0.42 1.00 16 31 H 0.42 2.77 8.91 -34.47 -0.31 2.46 16 32 H 0.12 0.69 7.74 -51.93 -0.40 0.29 16 33 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.10 0.51 7.83 -51.93 -0.41 0.10 16 35 H 0.14 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.10 0.68 7.18 -51.93 -0.37 0.31 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 334.83 15.07 5.05 5.05 Total: -1.00 -35.62 334.83 -7.53 -43.16 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -4.78 Total: -1.96 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -1.34 Total: -22.18 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.75 Total: -35.81 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -2.07 Total: -32.32 kcal Atomic # 9 Polarization: -4.47 SS G_CDS: 0.11 Total: -4.36 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.67 Total: 16.29 kcal Atomic # 16 Polarization: 32.71 SS G_CDS: -0.58 Total: 32.13 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.62 -7.53 -43.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344943875.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.494 kcal (2) G-P(sol) polarization free energy of solvation -35.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds