Wall clock time and date at job start Tue Mar 31 2020 11:07:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31508 * 1
3 3 Si 1.86799 * 119.99891 * 2 1
4 4 H 1.48502 * 109.47230 * 270.00227 * 3 2 1
5 5 H 1.48505 * 109.47283 * 30.00162 * 3 2 1
6 6 H 1.48497 * 109.47163 * 150.00300 * 3 2 1
7 7 C 1.37874 * 120.00180 * 180.02562 * 2 1 3
8 8 H 1.08001 * 119.99858 * 359.97438 * 7 2 1
9 9 C 1.50706 * 120.00048 * 180.02562 * 7 2 1
10 10 C 1.53005 * 109.46946 * 179.97438 * 9 7 2
11 11 C 1.53001 * 109.46650 * 179.97438 * 10 9 7
12 12 S 1.81402 * 109.46775 * 179.97438 * 11 10 9
13 13 O 1.42094 * 110.54236 * 68.37781 * 12 11 10
14 14 O 1.42101 * 110.54114 * 291.62528 * 12 11 10
15 15 N 1.65599 * 104.44831 * 180.02562 * 12 11 10
16 16 C 1.46501 * 119.99961 * 64.99829 * 15 12 11
17 17 C 1.53777 * 113.61486 * 214.99631 * 16 15 12
18 18 C 1.53778 * 87.08479 * 220.02273 * 17 16 15
19 19 C 1.52997 * 113.61679 * 139.98340 * 18 17 16
20 20 F 1.39905 * 109.47157 * 61.52895 * 19 18 17
21 21 F 1.39900 * 109.47010 * 301.53286 * 19 18 17
22 22 F 1.39897 * 109.47422 * 181.52978 * 19 18 17
23 23 C 1.53783 * 87.17189 * 25.39160 * 18 17 16
24 24 H 0.97006 * 120.00593 * 359.97438 * 1 2 3
25 25 H 1.08999 * 109.46703 * 59.99857 * 9 7 2
26 26 H 1.08997 * 109.46783 * 299.99675 * 9 7 2
27 27 H 1.08995 * 109.46892 * 59.99937 * 10 9 7
28 28 H 1.09001 * 109.46535 * 299.99766 * 10 9 7
29 29 H 1.09003 * 109.47022 * 60.00509 * 11 10 9
30 30 H 1.08997 * 109.47141 * 299.99841 * 11 10 9
31 31 H 0.97003 * 120.00237 * 245.00000 * 15 12 11
32 32 H 1.08999 * 112.85444 * 346.20123 * 16 15 12
33 33 H 1.09006 * 113.61080 * 105.47223 * 17 16 15
34 34 H 1.08997 * 113.61849 * 334.57714 * 17 16 15
35 35 H 1.09007 * 113.61285 * 270.80692 * 18 17 16
36 36 H 1.09000 * 113.61048 * 89.16040 * 23 18 17
37 37 H 1.09003 * 113.61260 * 220.06009 * 23 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2490 1.6177 0.0000
4 1 2.4965 2.0465 -1.4001
5 1 1.4465 2.6527 0.7001
6 1 3.5466 1.4402 0.7000
7 6 2.0045 -1.1940 -0.0005
8 1 1.4645 -2.1293 -0.0005
9 6 3.5116 -1.1940 0.0000
10 6 4.0216 -2.6365 -0.0001
11 6 5.5516 -2.6364 -0.0001
12 16 6.1563 -4.3467 0.0005
13 8 5.8602 -4.9807 -1.2362
14 8 5.8602 -4.9798 1.2377
15 7 7.8059 -4.2017 0.0011
16 6 8.4882 -3.6031 1.1511
17 6 9.7284 -2.7775 0.7703
18 6 10.4117 -3.3778 2.0102
19 6 11.8789 -3.7475 1.7828
20 9 12.6047 -2.5967 1.4572
21 9 11.9704 -4.6689 0.7341
22 9 12.4030 -4.3149 2.9492
23 6 9.4478 -4.5680 1.8711
24 1 -0.4851 0.8400 0.0004
25 1 3.8745 -0.6807 0.8905
26 1 3.8751 -0.6796 -0.8895
27 1 3.6586 -3.1501 -0.8903
28 1 3.6579 -3.1504 0.8897
29 1 5.9149 -2.1227 0.8900
30 1 5.9148 -2.1225 -0.8901
31 1 8.3205 -4.5130 -0.7600
32 1 7.8066 -3.0824 1.8237
33 1 9.5729 -1.7006 0.8358
34 1 10.1847 -3.0837 -0.1710
35 1 10.2579 -2.7952 2.9186
36 1 9.8274 -5.3647 1.2314
37 1 9.0663 -4.9345 2.8242
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000344943875.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:07:14
Heat of formation + Delta-G solvation = -249.138665 kcal
Electronic energy + Delta-G solvation = -24315.664194 eV
Core-core repulsion = 19997.173511 eV
Total energy + Delta-G solvation = -4318.490683 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 315.090 amu
Computer time = 0.45 seconds
Orbital eigenvalues (eV)
-51.04058 -48.56296 -48.52741 -40.19132 -38.12898 -37.01412 -36.47692 -34.28496
-34.22983 -30.13261 -28.55361 -26.79629 -25.37625 -23.89211 -22.25577 -21.18187
-20.43115 -19.41729 -19.30377 -18.98526 -18.79066 -18.32507 -17.23488 -17.07408
-16.30000 -16.25726 -16.11263 -15.50166 -15.46399 -15.32186 -14.97853 -14.85722
-14.72110 -14.69736 -14.14759 -13.95850 -13.66490 -13.62533 -13.48361 -13.28269
-13.19806 -13.16219 -13.09187 -12.67416 -12.51738 -12.11327 -11.97780 -11.82595
-11.69140 -11.61067 -11.38540 -11.21636 -10.76242 -10.33980 -8.28523 -6.34688
-0.71793 1.38659 1.41274 1.52780 1.72113 1.93262 2.37963 2.76734
2.84094 2.88868 3.06975 3.07204 3.28496 3.48635 3.64694 3.74291
3.78801 3.88417 3.97657 4.22886 4.37219 4.62108 4.66235 4.68677
4.70630 4.89861 4.94013 4.98919 5.01813 5.36175 5.39268 5.49068
5.64557 6.09662 6.26760 6.74279 7.30191 8.88608
Molecular weight = 315.09amu
Principal moments of inertia in cm(-1)
A = 0.020138 B = 0.002907 C = 0.002654
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1390.085966 B = 9628.670132 C =10547.246618
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.955 5.955
2 C -0.001 4.001
3 Si 0.957 3.043
4 H -0.266 1.266
5 H -0.287 1.287
6 H -0.234 1.234
7 C -0.545 4.545
8 H 0.028 0.972
9 C -0.005 4.005
10 C -0.106 4.106
11 C -0.608 4.608
12 S 2.621 3.379
13 O -0.998 6.998
14 O -0.990 6.990
15 N -1.095 6.095
16 C 0.122 3.878
17 C -0.128 4.128
18 C -0.160 4.160
19 C 0.458 3.542
20 F -0.188 7.188
21 F -0.189 7.189
22 F -0.192 7.192
23 C -0.148 4.148
24 H 0.266 0.734
25 H 0.036 0.964
26 H 0.031 0.969
27 H 0.059 0.941
28 H 0.063 0.937
29 H 0.160 0.840
30 H 0.157 0.843
31 H 0.427 0.573
32 H 0.139 0.861
33 H 0.115 0.885
34 H 0.103 0.897
35 H 0.162 0.838
36 H 0.098 0.902
37 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 28.877 -4.111 3.864 29.423
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.595 5.595
2 C -0.198 4.198
3 Si 0.779 3.221
4 H -0.191 1.191
5 H -0.213 1.213
6 H -0.157 1.157
7 C -0.583 4.583
8 H 0.046 0.954
9 C -0.043 4.043
10 C -0.145 4.145
11 C -0.740 4.740
12 S 2.717 3.283
13 O -0.988 6.988
14 O -0.979 6.979
15 N -0.854 5.854
16 C 0.014 3.986
17 C -0.168 4.168
18 C -0.180 4.180
19 C 0.404 3.596
20 F -0.170 7.170
21 F -0.171 7.171
22 F -0.173 7.173
23 C -0.187 4.187
24 H 0.075 0.925
25 H 0.054 0.946
26 H 0.049 0.951
27 H 0.078 0.922
28 H 0.082 0.918
29 H 0.178 0.822
30 H 0.175 0.825
31 H 0.264 0.736
32 H 0.157 0.843
33 H 0.133 0.867
34 H 0.121 0.879
35 H 0.179 0.821
36 H 0.116 0.884
37 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges 28.186 -4.825 3.999 28.874
hybrid contribution 0.192 0.818 -0.429 0.944
sum 28.378 -4.006 3.570 28.881
Atomic orbital electron populations
1.70090 1.08647 1.28317 1.52454 1.26149 0.95691 1.04033 0.93902
0.85572 0.79822 0.77397 0.79322 1.19119 1.21342 1.15655 1.21597
0.92589 0.93190 1.50917 0.95374 1.19510 0.93455 0.93547 0.97838
1.21184 0.90854 1.00374 1.02084 1.30516 1.05142 1.24019 1.14300
1.04454 0.73470 0.77589 0.72788 1.93542 1.83860 1.74771 1.46666
1.93553 1.83978 1.73647 1.46755 1.55331 1.24828 1.77197 1.28040
1.22481 0.94061 0.94713 0.87317 1.23496 0.93949 1.02719 0.96589
1.23952 0.86175 1.02692 1.05144 1.20693 0.91444 0.74151 0.73345
1.93183 1.80853 1.50222 1.92709 1.93152 1.96945 1.67876 1.59114
1.93176 1.89049 1.85698 1.49425 1.23666 0.95125 0.96641 1.03313
0.92480 0.94616 0.95086 0.92218 0.91819 0.82213 0.82474 0.73641
0.84332 0.86659 0.87903 0.82073 0.88397 0.88552
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -59.73 13.96 21.45 0.30 -59.43 16
2 C 0.00 -0.07 5.47 84.65 0.46 0.39 16
3 Si 0.96 42.02 27.47 68.60 1.88 43.91 16
4 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16
5 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16
6 H -0.23 -8.98 6.54 99.48 0.65 -8.33 16
7 C -0.54 -30.94 9.66 25.60 0.25 -30.69 16
8 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16
9 C 0.00 -0.21 4.04 29.85 0.12 -0.09 16
10 C -0.11 -3.78 5.16 30.60 0.16 -3.62 16
11 C -0.61 -13.59 6.07 71.98 0.44 -13.15 16
12 S 2.62 61.65 5.40 -56.49 -0.31 61.35 16
13 O -1.00 -31.33 18.08 -127.65 -2.31 -33.64 16
14 O -0.99 -29.87 17.81 -127.65 -2.27 -32.14 16
15 N -1.09 -15.26 5.68 -166.95 -0.95 -16.21 16
16 C 0.12 1.22 4.23 45.58 0.19 1.41 16
17 C -0.13 -0.83 7.24 31.12 0.23 -0.61 16
18 C -0.16 -1.23 3.79 -10.27 -0.04 -1.27 16
19 C 0.46 5.71 3.01 71.98 0.22 5.93 16
20 F -0.19 -2.65 17.20 44.97 0.77 -1.87 16
21 F -0.19 -2.78 15.74 44.97 0.71 -2.08 16
22 F -0.19 -2.90 17.32 44.97 0.78 -2.12 16
23 C -0.15 -1.54 7.34 31.18 0.23 -1.31 16
24 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16
25 H 0.04 1.43 7.20 -2.39 -0.02 1.41 16
26 H 0.03 1.25 7.57 -2.39 -0.02 1.23 16
27 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16
28 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16
29 H 0.16 2.51 7.83 -2.39 -0.02 2.49 16
30 H 0.16 2.73 8.14 -2.39 -0.02 2.71 16
31 H 0.43 4.63 8.91 -96.74 -0.86 3.77 16
32 H 0.14 0.97 7.74 -2.39 -0.02 0.95 16
33 H 0.11 0.36 8.14 -2.38 -0.02 0.34 16
34 H 0.10 0.68 7.83 -2.39 -0.02 0.66 16
35 H 0.16 0.53 8.14 -2.38 -0.02 0.51 16
36 H 0.10 1.13 7.18 -2.39 -0.02 1.11 16
37 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16
Total: -1.00 -79.86 334.83 1.04 -78.81
By element:
Atomic # 1 Polarization: 6.25 SS G_CDS: 0.18 Total: 6.44 kcal
Atomic # 6 Polarization: -45.27 SS G_CDS: 2.25 Total: -43.01 kcal
Atomic # 7 Polarization: -74.99 SS G_CDS: -0.65 Total: -75.64 kcal
Atomic # 8 Polarization: -61.20 SS G_CDS: -4.58 Total: -65.78 kcal
Atomic # 9 Polarization: -8.33 SS G_CDS: 2.26 Total: -6.07 kcal
Atomic # 14 Polarization: 42.02 SS G_CDS: 1.88 Total: 43.91 kcal
Atomic # 16 Polarization: 61.65 SS G_CDS: -0.31 Total: 61.35 kcal
Total: -79.86 1.04 -78.81 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000344943875.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -170.325 kcal
(2) G-P(sol) polarization free energy of solvation -79.857 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.183 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.044 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.814 kcal
(6) G-S(sol) free energy of system = (1) + (5) -249.139 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.45 seconds