Wall clock time and date at job start Tue Mar 31 2020 11:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 119.99891 * 2 1 4 4 H 1.48502 * 109.47230 * 270.00227 * 3 2 1 5 5 H 1.48505 * 109.47283 * 30.00162 * 3 2 1 6 6 H 1.48497 * 109.47163 * 150.00300 * 3 2 1 7 7 C 1.37874 * 120.00180 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99858 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00048 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46946 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46650 * 179.97438 * 10 9 7 12 12 S 1.81402 * 109.46775 * 179.97438 * 11 10 9 13 13 O 1.42094 * 110.54236 * 68.37781 * 12 11 10 14 14 O 1.42101 * 110.54114 * 291.62528 * 12 11 10 15 15 N 1.65599 * 104.44831 * 180.02562 * 12 11 10 16 16 C 1.46501 * 119.99961 * 64.99829 * 15 12 11 17 17 C 1.53777 * 113.61486 * 214.99631 * 16 15 12 18 18 C 1.53778 * 87.08479 * 220.02273 * 17 16 15 19 19 C 1.52997 * 113.61679 * 139.98340 * 18 17 16 20 20 F 1.39905 * 109.47157 * 61.52895 * 19 18 17 21 21 F 1.39900 * 109.47010 * 301.53286 * 19 18 17 22 22 F 1.39897 * 109.47422 * 181.52978 * 19 18 17 23 23 C 1.53783 * 87.17189 * 25.39160 * 18 17 16 24 24 H 0.97006 * 120.00593 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46703 * 59.99857 * 9 7 2 26 26 H 1.08997 * 109.46783 * 299.99675 * 9 7 2 27 27 H 1.08995 * 109.46892 * 59.99937 * 10 9 7 28 28 H 1.09001 * 109.46535 * 299.99766 * 10 9 7 29 29 H 1.09003 * 109.47022 * 60.00509 * 11 10 9 30 30 H 1.08997 * 109.47141 * 299.99841 * 11 10 9 31 31 H 0.97003 * 120.00237 * 245.00000 * 15 12 11 32 32 H 1.08999 * 112.85444 * 346.20123 * 16 15 12 33 33 H 1.09006 * 113.61080 * 105.47223 * 17 16 15 34 34 H 1.08997 * 113.61849 * 334.57714 * 17 16 15 35 35 H 1.09007 * 113.61285 * 270.80692 * 18 17 16 36 36 H 1.09000 * 113.61048 * 89.16040 * 23 18 17 37 37 H 1.09003 * 113.61260 * 220.06009 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 6 5.5516 -2.6364 -0.0001 12 16 6.1563 -4.3467 0.0005 13 8 5.8602 -4.9807 -1.2362 14 8 5.8602 -4.9798 1.2377 15 7 7.8059 -4.2017 0.0011 16 6 8.4882 -3.6031 1.1511 17 6 9.7284 -2.7775 0.7703 18 6 10.4117 -3.3778 2.0102 19 6 11.8789 -3.7475 1.7828 20 9 12.6047 -2.5967 1.4572 21 9 11.9704 -4.6689 0.7341 22 9 12.4030 -4.3149 2.9492 23 6 9.4478 -4.5680 1.8711 24 1 -0.4851 0.8400 0.0004 25 1 3.8745 -0.6807 0.8905 26 1 3.8751 -0.6796 -0.8895 27 1 3.6586 -3.1501 -0.8903 28 1 3.6579 -3.1504 0.8897 29 1 5.9149 -2.1227 0.8900 30 1 5.9148 -2.1225 -0.8901 31 1 8.3205 -4.5130 -0.7600 32 1 7.8066 -3.0824 1.8237 33 1 9.5729 -1.7006 0.8358 34 1 10.1847 -3.0837 -0.1710 35 1 10.2579 -2.7952 2.9186 36 1 9.8274 -5.3647 1.2314 37 1 9.0663 -4.9345 2.8242 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344943875.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:14 Heat of formation + Delta-G solvation = -249.138665 kcal Electronic energy + Delta-G solvation = -24315.664194 eV Core-core repulsion = 19997.173511 eV Total energy + Delta-G solvation = -4318.490683 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.090 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.04058 -48.56296 -48.52741 -40.19132 -38.12898 -37.01412 -36.47692 -34.28496 -34.22983 -30.13261 -28.55361 -26.79629 -25.37625 -23.89211 -22.25577 -21.18187 -20.43115 -19.41729 -19.30377 -18.98526 -18.79066 -18.32507 -17.23488 -17.07408 -16.30000 -16.25726 -16.11263 -15.50166 -15.46399 -15.32186 -14.97853 -14.85722 -14.72110 -14.69736 -14.14759 -13.95850 -13.66490 -13.62533 -13.48361 -13.28269 -13.19806 -13.16219 -13.09187 -12.67416 -12.51738 -12.11327 -11.97780 -11.82595 -11.69140 -11.61067 -11.38540 -11.21636 -10.76242 -10.33980 -8.28523 -6.34688 -0.71793 1.38659 1.41274 1.52780 1.72113 1.93262 2.37963 2.76734 2.84094 2.88868 3.06975 3.07204 3.28496 3.48635 3.64694 3.74291 3.78801 3.88417 3.97657 4.22886 4.37219 4.62108 4.66235 4.68677 4.70630 4.89861 4.94013 4.98919 5.01813 5.36175 5.39268 5.49068 5.64557 6.09662 6.26760 6.74279 7.30191 8.88608 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.020138 B = 0.002907 C = 0.002654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.085966 B = 9628.670132 C =10547.246618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.001 4.001 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.287 1.287 6 H -0.234 1.234 7 C -0.545 4.545 8 H 0.028 0.972 9 C -0.005 4.005 10 C -0.106 4.106 11 C -0.608 4.608 12 S 2.621 3.379 13 O -0.998 6.998 14 O -0.990 6.990 15 N -1.095 6.095 16 C 0.122 3.878 17 C -0.128 4.128 18 C -0.160 4.160 19 C 0.458 3.542 20 F -0.188 7.188 21 F -0.189 7.189 22 F -0.192 7.192 23 C -0.148 4.148 24 H 0.266 0.734 25 H 0.036 0.964 26 H 0.031 0.969 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.160 0.840 30 H 0.157 0.843 31 H 0.427 0.573 32 H 0.139 0.861 33 H 0.115 0.885 34 H 0.103 0.897 35 H 0.162 0.838 36 H 0.098 0.902 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.877 -4.111 3.864 29.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.198 4.198 3 Si 0.779 3.221 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.157 1.157 7 C -0.583 4.583 8 H 0.046 0.954 9 C -0.043 4.043 10 C -0.145 4.145 11 C -0.740 4.740 12 S 2.717 3.283 13 O -0.988 6.988 14 O -0.979 6.979 15 N -0.854 5.854 16 C 0.014 3.986 17 C -0.168 4.168 18 C -0.180 4.180 19 C 0.404 3.596 20 F -0.170 7.170 21 F -0.171 7.171 22 F -0.173 7.173 23 C -0.187 4.187 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.178 0.822 30 H 0.175 0.825 31 H 0.264 0.736 32 H 0.157 0.843 33 H 0.133 0.867 34 H 0.121 0.879 35 H 0.179 0.821 36 H 0.116 0.884 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 28.186 -4.825 3.999 28.874 hybrid contribution 0.192 0.818 -0.429 0.944 sum 28.378 -4.006 3.570 28.881 Atomic orbital electron populations 1.70090 1.08647 1.28317 1.52454 1.26149 0.95691 1.04033 0.93902 0.85572 0.79822 0.77397 0.79322 1.19119 1.21342 1.15655 1.21597 0.92589 0.93190 1.50917 0.95374 1.19510 0.93455 0.93547 0.97838 1.21184 0.90854 1.00374 1.02084 1.30516 1.05142 1.24019 1.14300 1.04454 0.73470 0.77589 0.72788 1.93542 1.83860 1.74771 1.46666 1.93553 1.83978 1.73647 1.46755 1.55331 1.24828 1.77197 1.28040 1.22481 0.94061 0.94713 0.87317 1.23496 0.93949 1.02719 0.96589 1.23952 0.86175 1.02692 1.05144 1.20693 0.91444 0.74151 0.73345 1.93183 1.80853 1.50222 1.92709 1.93152 1.96945 1.67876 1.59114 1.93176 1.89049 1.85698 1.49425 1.23666 0.95125 0.96641 1.03313 0.92480 0.94616 0.95086 0.92218 0.91819 0.82213 0.82474 0.73641 0.84332 0.86659 0.87903 0.82073 0.88397 0.88552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.73 13.96 21.45 0.30 -59.43 16 2 C 0.00 -0.07 5.47 84.65 0.46 0.39 16 3 Si 0.96 42.02 27.47 68.60 1.88 43.91 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 5 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 6 H -0.23 -8.98 6.54 99.48 0.65 -8.33 16 7 C -0.54 -30.94 9.66 25.60 0.25 -30.69 16 8 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 9 C 0.00 -0.21 4.04 29.85 0.12 -0.09 16 10 C -0.11 -3.78 5.16 30.60 0.16 -3.62 16 11 C -0.61 -13.59 6.07 71.98 0.44 -13.15 16 12 S 2.62 61.65 5.40 -56.49 -0.31 61.35 16 13 O -1.00 -31.33 18.08 -127.65 -2.31 -33.64 16 14 O -0.99 -29.87 17.81 -127.65 -2.27 -32.14 16 15 N -1.09 -15.26 5.68 -166.95 -0.95 -16.21 16 16 C 0.12 1.22 4.23 45.58 0.19 1.41 16 17 C -0.13 -0.83 7.24 31.12 0.23 -0.61 16 18 C -0.16 -1.23 3.79 -10.27 -0.04 -1.27 16 19 C 0.46 5.71 3.01 71.98 0.22 5.93 16 20 F -0.19 -2.65 17.20 44.97 0.77 -1.87 16 21 F -0.19 -2.78 15.74 44.97 0.71 -2.08 16 22 F -0.19 -2.90 17.32 44.97 0.78 -2.12 16 23 C -0.15 -1.54 7.34 31.18 0.23 -1.31 16 24 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 25 H 0.04 1.43 7.20 -2.39 -0.02 1.41 16 26 H 0.03 1.25 7.57 -2.39 -0.02 1.23 16 27 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.16 2.51 7.83 -2.39 -0.02 2.49 16 30 H 0.16 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.43 4.63 8.91 -96.74 -0.86 3.77 16 32 H 0.14 0.97 7.74 -2.39 -0.02 0.95 16 33 H 0.11 0.36 8.14 -2.38 -0.02 0.34 16 34 H 0.10 0.68 7.83 -2.39 -0.02 0.66 16 35 H 0.16 0.53 8.14 -2.38 -0.02 0.51 16 36 H 0.10 1.13 7.18 -2.39 -0.02 1.11 16 37 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -79.86 334.83 1.04 -78.81 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: 0.18 Total: 6.44 kcal Atomic # 6 Polarization: -45.27 SS G_CDS: 2.25 Total: -43.01 kcal Atomic # 7 Polarization: -74.99 SS G_CDS: -0.65 Total: -75.64 kcal Atomic # 8 Polarization: -61.20 SS G_CDS: -4.58 Total: -65.78 kcal Atomic # 9 Polarization: -8.33 SS G_CDS: 2.26 Total: -6.07 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 1.88 Total: 43.91 kcal Atomic # 16 Polarization: 61.65 SS G_CDS: -0.31 Total: 61.35 kcal Total: -79.86 1.04 -78.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344943875.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.325 kcal (2) G-P(sol) polarization free energy of solvation -79.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -250.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -249.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds