Wall clock time and date at job start Tue Mar 31 2020 11:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 119.99601 * 2 1 4 4 H 1.48505 * 109.47235 * 269.99785 * 3 2 1 5 5 H 1.48498 * 109.47357 * 29.99621 * 3 2 1 6 6 H 1.48499 * 109.46818 * 150.00029 * 3 2 1 7 7 C 1.37876 * 120.00291 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00133 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99884 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46922 * 179.97438 * 9 7 2 11 11 C 1.53005 * 109.46829 * 180.02562 * 10 9 7 12 12 S 1.81394 * 109.46818 * 180.02562 * 11 10 9 13 13 O 1.42100 * 110.54602 * 68.37451 * 12 11 10 14 14 O 1.42095 * 110.54423 * 291.61958 * 12 11 10 15 15 N 1.65601 * 104.44792 * 179.97438 * 12 11 10 16 16 C 1.46500 * 120.00250 * 89.99758 * 15 12 11 17 17 C 1.53006 * 109.47249 * 94.99822 * 16 15 12 18 18 F 1.39900 * 109.46764 * 60.00158 * 17 16 15 19 19 F 1.39897 * 109.47129 * 180.02562 * 17 16 15 20 20 F 1.39903 * 109.46814 * 300.00629 * 17 16 15 21 21 C 1.46502 * 119.99938 * 269.99626 * 15 12 11 22 22 C 1.53000 * 117.50000 * 188.61964 * 21 15 12 23 23 C 1.52999 * 60.00303 * 252.51655 * 22 21 15 24 24 H 0.97001 * 120.00268 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.46939 * 60.00195 * 9 7 2 26 26 H 1.09001 * 109.46929 * 300.00445 * 9 7 2 27 27 H 1.09006 * 109.46996 * 60.00425 * 10 9 7 28 28 H 1.08996 * 109.47395 * 300.00151 * 10 9 7 29 29 H 1.08992 * 109.47212 * 60.00190 * 11 10 9 30 30 H 1.09009 * 109.46983 * 300.00280 * 11 10 9 31 31 H 1.09001 * 109.46596 * 335.00219 * 16 15 12 32 32 H 1.09000 * 109.47381 * 214.99970 * 16 15 12 33 33 H 1.08996 * 115.55102 * 334.33148 * 21 15 12 34 34 H 1.09005 * 117.49512 * 0.02562 * 22 21 15 35 35 H 1.08996 * 117.49920 * 145.01839 * 22 21 15 36 36 H 1.09002 * 117.49146 * 252.51466 * 23 22 21 37 37 H 1.08993 * 117.51940 * 107.48535 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 16 2.6592 -6.3657 0.0025 13 8 3.3561 -6.4256 1.2394 14 8 3.3559 -6.4266 -1.2345 15 7 1.7089 -7.7219 0.0037 16 6 1.2880 -8.3227 -1.2644 17 6 2.2559 -9.4456 -1.6429 18 9 2.2526 -10.4217 -0.6407 19 9 1.8543 -10.0189 -2.8542 20 9 3.5462 -8.9225 -1.7801 21 6 1.2891 -8.3210 1.2731 22 6 0.5862 -9.6787 1.2152 23 6 -0.2133 -8.4169 1.5462 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8881 26 1 0.6247 -2.5562 0.8919 27 1 2.8727 -3.6038 0.8910 28 1 2.8714 -3.6046 -0.8890 29 1 0.8534 -5.0450 -0.8877 30 1 0.8540 -5.0446 0.8923 31 1 1.2907 -7.5621 -2.0452 32 1 0.2827 -8.7302 -1.1575 33 1 1.9440 -8.1288 2.1229 34 1 0.4364 -10.1264 0.2326 35 1 0.7786 -10.3801 2.0270 36 1 -0.5467 -8.2882 2.5760 37 1 -0.8893 -8.0340 0.7818 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344984254.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:12 Heat of formation + Delta-G solvation = -202.425132 kcal Electronic energy + Delta-G solvation = -25416.957771 eV Core-core repulsion = 21100.492739 eV Total energy + Delta-G solvation = -4316.465032 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.090 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.21505 -47.78135 -47.61671 -38.65470 -37.13088 -35.90279 -34.74912 -34.06161 -32.24113 -29.18161 -27.87518 -24.02865 -23.82059 -22.70871 -21.79017 -20.58578 -19.42084 -18.74130 -18.56164 -17.96985 -17.69509 -16.66527 -16.33631 -15.73872 -15.54486 -15.02468 -14.70545 -14.52873 -14.47077 -14.26898 -14.11558 -13.82871 -13.79588 -13.23243 -13.14211 -12.80639 -12.66019 -12.34833 -12.11730 -12.06135 -11.87938 -11.83843 -11.75423 -11.48102 -11.30389 -10.95521 -10.90521 -10.66818 -10.45999 -10.01556 -9.58320 -9.30349 -9.07211 -8.44424 -6.09417 -4.12703 0.17398 2.28271 2.56849 3.28366 3.34713 3.38680 3.41471 3.59982 3.71693 3.81319 3.94299 4.12259 4.34962 4.40134 4.52133 4.62347 4.68253 4.77805 4.89601 5.07697 5.13766 5.27253 5.36516 5.58483 5.77045 5.78819 5.80799 6.05333 6.20669 6.36363 6.79845 7.51621 7.60888 7.88199 8.28223 8.93406 9.52409 11.01746 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.024246 B = 0.003339 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.565483 B = 8383.842568 C = 8780.950454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.031 3.969 10 C -0.106 4.106 11 C -0.603 4.603 12 S 2.589 3.411 13 O -0.948 6.948 14 O -0.943 6.943 15 N -0.971 5.971 16 C 0.080 3.920 17 C 0.430 3.570 18 F -0.178 7.178 19 F -0.184 7.184 20 F -0.166 7.166 21 C 0.070 3.930 22 C -0.177 4.177 23 C -0.193 4.193 24 H 0.262 0.738 25 H 0.021 0.979 26 H 0.021 0.979 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.150 0.850 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.890 -21.584 -0.323 21.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.007 4.007 10 C -0.146 4.146 11 C -0.735 4.735 12 S 2.687 3.313 13 O -0.938 6.938 14 O -0.933 6.933 15 N -0.802 5.802 16 C -0.049 4.049 17 C 0.373 3.627 18 F -0.160 7.160 19 F -0.165 7.165 20 F -0.147 7.147 21 C -0.036 4.036 22 C -0.216 4.216 23 C -0.233 4.233 24 H 0.071 0.929 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.146 0.854 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.142 0.858 33 H 0.168 0.832 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.038 -21.517 -0.325 21.544 hybrid contribution -0.218 0.875 -0.132 0.912 sum -1.256 -20.641 -0.457 20.685 Atomic orbital electron populations 1.69951 1.06101 1.26837 1.50521 1.25011 0.94883 0.99380 0.95022 0.86553 0.79898 0.83131 0.78226 1.20542 1.21149 1.19710 1.21244 0.93274 0.90846 1.51202 0.92340 1.19065 0.93483 0.90377 0.97779 1.21537 0.99463 0.91491 1.02103 1.30559 1.16146 1.15333 1.11475 1.06003 0.75786 0.74817 0.74670 1.93567 1.69718 1.85446 1.45094 1.93628 1.69465 1.85352 1.44834 1.57543 1.70141 1.43941 1.08586 1.22380 0.98036 0.96045 0.88418 1.21237 0.82770 0.84085 0.74565 1.93169 1.96414 1.65539 1.60833 1.93185 1.90554 1.86323 1.46452 1.93303 1.39968 1.85975 1.95448 1.21747 0.95194 0.99864 0.86842 1.23484 1.03018 0.90875 1.04187 1.23518 0.94283 1.01715 1.03739 0.92863 0.96095 0.96048 0.91481 0.91459 0.85355 0.85049 0.85121 0.85800 0.83224 0.87860 0.87633 0.87517 0.88109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.13 13.29 55.43 0.74 -25.40 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.53 -14.58 9.11 -34.44 -0.31 -14.90 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 10 C -0.11 -2.07 5.16 -26.73 -0.14 -2.21 16 11 C -0.60 -8.65 6.18 37.16 0.23 -8.42 16 12 S 2.59 36.72 5.36 -107.50 -0.58 36.15 16 13 O -0.95 -16.04 16.75 -57.54 -0.96 -17.00 16 14 O -0.94 -15.60 15.13 -57.54 -0.87 -16.47 16 15 N -0.97 -10.34 2.95 -107.29 -0.32 -10.65 16 16 C 0.08 0.69 4.85 -4.04 -0.02 0.68 16 17 C 0.43 4.65 3.28 37.16 0.12 4.77 16 18 F -0.18 -1.88 13.73 2.25 0.03 -1.85 16 19 F -0.18 -1.89 17.32 2.25 0.04 -1.85 16 20 F -0.17 -2.35 15.32 2.25 0.03 -2.31 16 21 C 0.07 0.65 6.15 -67.93 -0.42 0.23 16 22 C -0.18 -1.29 8.29 -26.73 -0.22 -1.51 16 23 C -0.19 -1.37 10.12 -26.73 -0.27 -1.64 16 24 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.13 1.57 8.14 -51.93 -0.42 1.15 16 30 H 0.13 1.68 8.14 -51.92 -0.42 1.26 16 31 H 0.13 0.97 7.61 -51.93 -0.40 0.57 16 32 H 0.12 0.66 6.56 -51.93 -0.34 0.32 16 33 H 0.15 1.48 7.28 -51.93 -0.38 1.10 16 34 H 0.10 0.72 5.03 -51.93 -0.26 0.46 16 35 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.10 0.64 8.06 -51.93 -0.42 0.23 16 LS Contribution 330.01 15.07 4.97 4.97 Total: -1.00 -33.95 330.01 -7.92 -41.87 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -4.72 Total: -2.89 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -1.27 Total: -20.82 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.42 Total: -36.05 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -1.83 Total: -33.47 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 0.10 Total: -6.02 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 36.72 SS G_CDS: -0.58 Total: 36.15 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.95 -7.92 -41.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344984254.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.559 kcal (2) G-P(sol) polarization free energy of solvation -33.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds