Wall clock time and date at job start Tue Mar 31 2020 11:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86806 * 119.99973 * 2 1 4 4 H 1.48496 * 109.47240 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46672 * 299.99042 * 3 2 1 6 6 H 1.48491 * 109.47340 * 59.99302 * 3 2 1 7 7 C 1.39942 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00156 * 162.60158 * 7 2 1 9 9 C 1.41435 * 119.99292 * 342.60018 * 7 2 1 10 10 C 1.40794 * 120.17291 * 154.91678 * 9 7 2 11 11 C 1.37707 * 120.03776 * 180.02562 * 10 9 7 12 12 C 1.38369 * 120.41506 * 359.73716 * 11 10 9 13 13 C 1.39882 * 120.35682 * 0.52014 * 12 11 10 14 14 C 1.47878 * 120.02391 * 179.76704 * 13 12 11 15 15 O 1.21546 * 119.99983 * 179.72385 * 14 13 12 16 16 N 1.34784 * 120.00300 * 359.71585 * 14 13 12 17 17 C 1.46494 * 120.00073 * 180.02562 * 16 14 13 18 18 C 1.50704 * 109.47246 * 180.02562 * 17 16 14 19 19 C 1.35162 * 125.60518 * 90.00022 * 18 17 16 20 20 C 1.40312 * 107.12498 * 180.02562 * 19 18 17 21 21 C 1.36644 * 106.70208 * 0.02562 * 20 19 18 22 22 C 1.46467 * 125.99596 * 180.02562 * 21 20 19 23 23 O 1.21619 * 119.99982 * 359.97438 * 22 21 20 24 24 O 1.34907 * 119.99857 * 180.02562 * 22 21 20 25 25 O 1.33907 * 125.60416 * 269.69709 * 18 17 16 26 26 C 1.39027 * 119.94762 * 359.48234 * 13 12 11 27 27 H 0.96999 * 119.99796 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.97624 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.79100 * 180.02562 * 11 10 9 30 30 H 1.08004 * 119.82310 * 180.27736 * 12 11 10 31 31 H 0.96996 * 119.99585 * 0.02562 * 16 14 13 32 32 H 1.09001 * 109.47480 * 300.00499 * 17 16 14 33 33 H 1.09005 * 109.47078 * 59.99829 * 17 16 14 34 34 H 1.07996 * 126.44234 * 359.97438 * 19 18 17 35 35 H 1.07999 * 126.65079 * 180.02562 * 20 19 18 36 36 H 0.96696 * 116.99878 * 180.02562 * 24 22 21 37 37 H 1.08006 * 120.20184 * 180.23633 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8836 2.3963 -1.2127 6 1 1.8834 2.3966 1.2123 7 6 2.0080 -1.2119 0.0005 8 1 3.0509 -1.2334 -0.2791 9 6 1.3493 -2.4085 0.3674 10 6 1.8189 -3.6486 -0.1060 11 6 1.1751 -4.8119 0.2525 12 6 0.0685 -4.7730 1.0823 13 6 -0.4157 -3.5499 1.5581 14 6 -1.6020 -3.5165 2.4403 15 8 -2.0194 -2.4539 2.8575 16 7 -2.2205 -4.6643 2.7818 17 6 -3.3961 -4.6311 3.6553 18 6 -3.8935 -6.0356 3.8818 19 6 -3.5015 -6.8578 4.8804 20 6 -4.2041 -8.0622 4.7238 21 6 -4.9993 -7.9126 3.6227 22 6 -5.9133 -8.9190 3.0778 23 8 -6.0121 -10.0054 3.6155 24 8 -6.6447 -8.6414 1.9787 25 8 -4.8007 -6.6720 3.1301 26 6 0.2227 -2.3663 1.2056 27 1 -0.4850 0.8401 -0.0004 28 1 2.6841 -3.6873 -0.7513 29 1 1.5390 -5.7609 -0.1125 30 1 -0.4264 -5.6916 1.3610 31 1 -1.8873 -5.5123 2.4490 32 1 -3.1257 -4.1832 4.6115 33 1 -4.1812 -4.0385 3.1856 34 1 -2.7821 -6.6308 5.6532 35 1 -4.1305 -8.9378 5.3517 36 1 -7.2340 -9.3369 1.6563 37 1 -0.1454 -1.4199 1.5737 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347395695.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:47 Heat of formation + Delta-G solvation = -90.914672 kcal Electronic energy + Delta-G solvation = -24237.068913 eV Core-core repulsion = 20331.852127 eV Total energy + Delta-G solvation = -3905.216787 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.15486 -40.30347 -39.29550 -37.11218 -36.59273 -34.87665 -33.77604 -33.45964 -31.27914 -30.00393 -29.48473 -27.16346 -25.31480 -23.86965 -22.45491 -21.91443 -21.03850 -20.83012 -19.72863 -18.88364 -18.11471 -17.77808 -17.00629 -16.54342 -15.81009 -15.47614 -15.31761 -15.00262 -14.84113 -14.50572 -14.07115 -13.75155 -13.56024 -13.38306 -13.28135 -13.04637 -12.71370 -12.54751 -12.27713 -12.05853 -11.68466 -11.39804 -11.20718 -11.11958 -10.78103 -10.52871 -10.47566 -10.10910 -9.73656 -9.39482 -9.26033 -8.94492 -8.91577 -7.69402 -7.56646 -6.83856 -4.45438 0.38172 1.76856 1.98670 2.12002 2.49035 2.76647 2.79244 3.06049 3.10305 3.12098 3.62268 3.76343 3.89342 4.18545 4.45592 4.58515 4.74637 5.08878 5.14807 5.22320 5.45143 5.51696 5.55947 5.71527 5.89241 5.92792 6.03179 6.22005 6.50451 6.56651 6.66592 6.93172 6.95872 7.16486 7.32689 7.38576 7.62367 7.68156 7.85020 7.96865 8.12848 8.45770 8.74040 8.77581 8.80538 10.11017 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.025460 B = 0.002490 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.501191 B =11242.895790 C =11628.035450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.459 4.459 8 H 0.082 0.918 9 C 0.098 3.902 10 C -0.210 4.210 11 C -0.097 4.097 12 C -0.218 4.218 13 C -0.128 4.128 14 C 0.569 3.431 15 O -0.541 6.541 16 N -0.736 5.736 17 C 0.196 3.804 18 C 0.026 3.974 19 C -0.203 4.203 20 C -0.099 4.099 21 C -0.069 4.069 22 C 0.574 3.426 23 O -0.497 6.497 24 O -0.502 6.502 25 O -0.142 6.142 26 C -0.091 4.091 27 H 0.284 0.716 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.403 0.597 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.167 0.833 35 H 0.167 0.833 36 H 0.420 0.580 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.954 -12.509 6.748 16.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.183 1.183 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.488 4.488 8 H 0.100 0.900 9 C 0.096 3.904 10 C -0.230 4.230 11 C -0.115 4.115 12 C -0.238 4.238 13 C -0.131 4.131 14 C 0.360 3.640 15 O -0.419 6.419 16 N -0.393 5.393 17 C 0.073 3.927 18 C -0.027 4.027 19 C -0.222 4.222 20 C -0.119 4.119 21 C -0.120 4.120 22 C 0.419 3.581 23 O -0.386 6.386 24 O -0.314 6.314 25 O -0.036 6.036 26 C -0.111 4.111 27 H 0.096 0.904 28 H 0.115 0.885 29 H 0.112 0.888 30 H 0.107 0.893 31 H 0.240 0.760 32 H 0.123 0.877 33 H 0.107 0.893 34 H 0.184 0.816 35 H 0.185 0.815 36 H 0.279 0.721 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.411 -11.429 7.053 16.399 hybrid contribution 0.042 -0.348 -0.336 0.485 sum -9.368 -11.776 6.717 16.480 Atomic orbital electron populations 1.69789 1.07581 1.29732 1.33650 1.25973 0.94786 1.01590 0.92285 0.86228 0.80878 0.80776 0.78708 1.18330 1.19901 1.19535 1.19625 0.98098 0.90962 1.40078 0.89988 1.17610 0.91182 0.92505 0.89137 1.21122 1.03447 0.92802 1.05584 1.20437 0.96040 0.96788 0.98265 1.20336 1.01467 0.94567 1.07404 1.19384 0.96401 0.95424 1.01917 1.18872 0.83197 0.82342 0.79563 1.90717 1.66264 1.29877 1.55012 1.45996 1.30381 1.10615 1.52272 1.19693 0.89168 0.86453 0.97426 1.23021 0.91642 0.96085 0.91952 1.21759 1.04934 0.93277 1.02260 1.22033 0.94574 0.99730 0.95556 1.20641 1.05917 0.85430 1.00002 1.18830 0.77325 0.84147 0.77831 1.91010 1.64919 1.22699 1.60010 1.84696 1.54409 1.49565 1.42714 1.84154 1.48588 1.23046 1.47837 1.21635 0.96392 0.96349 0.96690 0.90444 0.88540 0.88846 0.89285 0.76049 0.87741 0.89312 0.81584 0.81499 0.72103 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.35 10.97 55.55 0.61 -19.74 16 2 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 3 Si 0.91 18.42 29.59 -169.99 -5.03 13.39 16 4 H -0.26 -5.16 7.11 56.52 0.40 -4.75 16 5 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 7 C -0.46 -11.81 9.05 -37.73 -0.34 -12.15 16 8 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 9 C 0.10 2.54 5.57 -106.87 -0.59 1.95 16 10 C -0.21 -4.87 9.78 -38.81 -0.38 -5.25 16 11 C -0.10 -2.02 10.01 -39.73 -0.40 -2.42 16 12 C -0.22 -4.44 9.55 -38.92 -0.37 -4.81 16 13 C -0.13 -2.92 5.87 -105.04 -0.62 -3.53 16 14 C 0.57 11.74 7.77 -12.31 -0.10 11.65 16 15 O -0.54 -12.76 16.33 5.33 0.09 -12.68 16 16 N -0.74 -11.35 5.50 -62.42 -0.34 -11.70 16 17 C 0.20 2.45 6.20 -5.20 -0.03 2.42 16 18 C 0.03 0.29 6.68 -35.40 -0.24 0.06 16 19 C -0.20 -1.89 10.77 -39.90 -0.43 -2.32 16 20 C -0.10 -0.94 10.62 -39.38 -0.42 -1.36 16 21 C -0.07 -0.77 7.18 -36.85 -0.26 -1.03 16 22 C 0.57 6.01 8.30 34.04 0.28 6.29 16 23 O -0.50 -5.98 17.65 -19.36 -0.34 -6.32 16 24 O -0.50 -4.15 13.44 -42.50 -0.57 -4.72 16 25 O -0.14 -1.73 10.67 4.73 0.05 -1.68 16 26 C -0.09 -2.35 8.23 -38.44 -0.32 -2.66 16 27 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 28 H 0.10 2.08 8.06 -52.48 -0.42 1.66 16 29 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 30 H 0.09 1.50 6.38 -52.48 -0.33 1.17 16 31 H 0.40 5.59 6.48 -40.82 -0.26 5.33 16 32 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.17 1.26 8.06 -52.49 -0.42 0.83 16 36 H 0.42 1.21 9.11 45.56 0.42 1.63 16 37 H 0.13 3.76 5.77 -52.48 -0.30 3.45 16 LS Contribution 338.66 15.07 5.10 5.10 Total: -1.00 -31.74 338.66 -7.31 -39.06 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -2.57 Total: 10.75 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -4.30 Total: -11.47 kcal Atomic # 7 Polarization: -31.70 SS G_CDS: 0.27 Total: -31.44 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.78 Total: -25.40 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -5.03 Total: 13.39 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.74 -7.31 -39.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347395695.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.859 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds