Wall clock time and date at job start Tue Mar 31 2020 11:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86806 * 119.99973 * 2 1 4 4 H 1.48496 * 109.47240 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46672 * 299.99042 * 3 2 1 6 6 H 1.48491 * 109.47340 * 59.99302 * 3 2 1 7 7 C 1.39942 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00156 * 162.60158 * 7 2 1 9 9 C 1.41435 * 119.99292 * 342.60018 * 7 2 1 10 10 C 1.40794 * 120.17291 * 154.91678 * 9 7 2 11 11 C 1.37707 * 120.03776 * 180.02562 * 10 9 7 12 12 C 1.38369 * 120.41506 * 359.73716 * 11 10 9 13 13 C 1.39882 * 120.35682 * 0.52014 * 12 11 10 14 14 C 1.47878 * 120.02391 * 179.76704 * 13 12 11 15 15 O 1.21546 * 119.99983 * 179.72385 * 14 13 12 16 16 N 1.34784 * 120.00300 * 359.71585 * 14 13 12 17 17 C 1.46494 * 120.00073 * 180.02562 * 16 14 13 18 18 C 1.50704 * 109.47246 * 180.02562 * 17 16 14 19 19 C 1.35162 * 125.60518 * 90.00022 * 18 17 16 20 20 C 1.40312 * 107.12498 * 180.02562 * 19 18 17 21 21 C 1.36644 * 106.70208 * 0.02562 * 20 19 18 22 22 C 1.46467 * 125.99596 * 180.02562 * 21 20 19 23 23 O 1.21619 * 119.99982 * 359.97438 * 22 21 20 24 24 O 1.34907 * 119.99857 * 180.02562 * 22 21 20 25 25 O 1.33907 * 125.60416 * 269.69709 * 18 17 16 26 26 C 1.39027 * 119.94762 * 359.48234 * 13 12 11 27 27 H 0.96999 * 119.99796 * 0.02562 * 1 2 3 28 28 H 1.08004 * 119.97624 * 359.97438 * 10 9 7 29 29 H 1.08000 * 119.79100 * 180.02562 * 11 10 9 30 30 H 1.08004 * 119.82310 * 180.27736 * 12 11 10 31 31 H 0.96996 * 119.99585 * 0.02562 * 16 14 13 32 32 H 1.09001 * 109.47480 * 300.00499 * 17 16 14 33 33 H 1.09005 * 109.47078 * 59.99829 * 17 16 14 34 34 H 1.07996 * 126.44234 * 359.97438 * 19 18 17 35 35 H 1.07999 * 126.65079 * 180.02562 * 20 19 18 36 36 H 0.96696 * 116.99878 * 180.02562 * 24 22 21 37 37 H 1.08006 * 120.20184 * 180.23633 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.7022 1.3465 0.0006 5 1 1.8836 2.3963 -1.2127 6 1 1.8834 2.3966 1.2123 7 6 2.0080 -1.2119 0.0005 8 1 3.0509 -1.2334 -0.2791 9 6 1.3493 -2.4085 0.3674 10 6 1.8189 -3.6486 -0.1060 11 6 1.1751 -4.8119 0.2525 12 6 0.0685 -4.7730 1.0823 13 6 -0.4157 -3.5499 1.5581 14 6 -1.6020 -3.5165 2.4403 15 8 -2.0194 -2.4539 2.8575 16 7 -2.2205 -4.6643 2.7818 17 6 -3.3961 -4.6311 3.6553 18 6 -3.8935 -6.0356 3.8818 19 6 -3.5015 -6.8578 4.8804 20 6 -4.2041 -8.0622 4.7238 21 6 -4.9993 -7.9126 3.6227 22 6 -5.9133 -8.9190 3.0778 23 8 -6.0121 -10.0054 3.6155 24 8 -6.6447 -8.6414 1.9787 25 8 -4.8007 -6.6720 3.1301 26 6 0.2227 -2.3663 1.2056 27 1 -0.4850 0.8401 -0.0004 28 1 2.6841 -3.6873 -0.7513 29 1 1.5390 -5.7609 -0.1125 30 1 -0.4264 -5.6916 1.3610 31 1 -1.8873 -5.5123 2.4490 32 1 -3.1257 -4.1832 4.6115 33 1 -4.1812 -4.0385 3.1856 34 1 -2.7821 -6.6308 5.6532 35 1 -4.1305 -8.9378 5.3517 36 1 -7.2340 -9.3369 1.6563 37 1 -0.1454 -1.4199 1.5737 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347395695.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:46 Heat of formation + Delta-G solvation = -112.274018 kcal Electronic energy + Delta-G solvation = -24237.995124 eV Core-core repulsion = 20331.852127 eV Total energy + Delta-G solvation = -3906.142997 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.96835 -41.09229 -40.87668 -38.84915 -37.32269 -36.23511 -35.56038 -34.29120 -32.60764 -31.45151 -31.23143 -28.26908 -27.10823 -24.85379 -23.83929 -22.88849 -22.70562 -21.70068 -21.29119 -19.73259 -19.52368 -18.76950 -18.11841 -17.85414 -17.14146 -16.90494 -16.52656 -16.36103 -16.23308 -15.89645 -15.24159 -15.02938 -14.86161 -14.43613 -14.36491 -14.26942 -14.15213 -14.10376 -13.46534 -13.26619 -12.94952 -12.78780 -12.78391 -12.53566 -12.20678 -12.17617 -11.91362 -11.49682 -11.23882 -11.07672 -10.93345 -10.29898 -9.91499 -9.47845 -9.38118 -8.65814 -6.37347 -0.43189 0.36235 0.96802 1.00964 1.21927 1.38182 1.47415 1.54047 1.72134 2.05159 2.07087 2.20370 2.35488 2.78796 3.32519 3.69941 3.73889 3.96034 4.01723 4.24204 4.35634 4.41930 4.46835 4.58770 4.61386 4.81074 4.90641 5.09717 5.17583 5.18789 5.24681 5.30009 5.33006 5.52218 5.73194 5.85581 5.92398 6.05790 6.28551 6.44327 6.63628 6.77728 6.89028 6.94704 7.21193 8.31285 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.025460 B = 0.002490 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.501191 B =11242.895790 C =11628.035450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.030 3.970 3 Si 0.982 3.018 4 H -0.252 1.252 5 H -0.265 1.265 6 H -0.270 1.270 7 C -0.496 4.496 8 H 0.083 0.917 9 C 0.067 3.933 10 C -0.216 4.216 11 C -0.096 4.096 12 C -0.197 4.197 13 C -0.138 4.138 14 C 0.568 3.432 15 O -0.580 6.580 16 N -0.714 5.714 17 C 0.197 3.803 18 C 0.011 3.989 19 C -0.183 4.183 20 C -0.093 4.093 21 C -0.086 4.086 22 C 0.579 3.421 23 O -0.517 6.517 24 O -0.503 6.503 25 O -0.160 6.160 26 C -0.128 4.128 27 H 0.287 0.713 28 H 0.108 0.892 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.414 0.586 32 H 0.120 0.880 33 H 0.081 0.919 34 H 0.192 0.808 35 H 0.188 0.812 36 H 0.441 0.559 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.822 -14.903 7.395 18.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.185 4.185 3 Si 0.803 3.197 4 H -0.175 1.175 5 H -0.190 1.190 6 H -0.194 1.194 7 C -0.526 4.526 8 H 0.101 0.899 9 C 0.064 3.936 10 C -0.236 4.236 11 C -0.114 4.114 12 C -0.217 4.217 13 C -0.141 4.141 14 C 0.359 3.641 15 O -0.460 6.460 16 N -0.369 5.369 17 C 0.075 3.925 18 C -0.041 4.041 19 C -0.203 4.203 20 C -0.112 4.112 21 C -0.136 4.136 22 C 0.424 3.576 23 O -0.409 6.409 24 O -0.318 6.318 25 O -0.056 6.056 26 C -0.149 4.149 27 H 0.097 0.903 28 H 0.126 0.874 29 H 0.155 0.845 30 H 0.152 0.848 31 H 0.252 0.748 32 H 0.138 0.862 33 H 0.099 0.901 34 H 0.209 0.791 35 H 0.205 0.795 36 H 0.304 0.696 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.300 -13.892 7.685 18.399 hybrid contribution -0.110 0.126 -0.519 0.545 sum -9.409 -13.766 7.167 18.149 Atomic orbital electron populations 1.69882 1.09178 1.30573 1.35422 1.26836 0.95425 1.04895 0.91363 0.85158 0.79640 0.76175 0.78769 1.17530 1.18992 1.19448 1.19878 0.98402 0.92145 1.42128 0.89866 1.17956 0.91860 0.93875 0.89883 1.21419 1.03864 0.92872 1.05411 1.20913 0.95453 0.97677 0.97387 1.20837 1.00583 0.95137 1.05102 1.19708 0.96953 0.95460 1.02003 1.18619 0.83005 0.83117 0.79386 1.90697 1.67238 1.31626 1.56469 1.45750 1.30353 1.09311 1.51449 1.19758 0.87678 0.87817 0.97272 1.22756 0.92670 0.95658 0.93035 1.22065 1.04197 0.92394 1.01603 1.22359 0.93534 1.00348 0.94963 1.20977 1.06647 0.85220 1.00797 1.18778 0.77182 0.83671 0.77949 1.91001 1.65716 1.23396 1.60758 1.84661 1.54527 1.50741 1.41859 1.84120 1.49217 1.23658 1.48588 1.21447 0.98125 0.96439 0.98872 0.90267 0.87418 0.84519 0.84817 0.74836 0.86248 0.90069 0.79113 0.79490 0.69609 0.88079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.31 10.97 21.83 0.24 -45.07 16 2 C 0.03 1.53 5.14 85.26 0.44 1.97 16 3 Si 0.98 39.08 29.59 68.60 2.03 41.11 16 4 H -0.25 -9.57 7.11 99.48 0.71 -8.87 16 5 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 6 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.50 -26.65 9.05 23.47 0.21 -26.44 16 8 H 0.08 4.23 7.90 -2.91 -0.02 4.21 16 9 C 0.07 3.55 5.57 -21.32 -0.12 3.43 16 10 C -0.22 -9.91 9.78 22.77 0.22 -9.68 16 11 C -0.10 -3.73 10.01 22.18 0.22 -3.51 16 12 C -0.20 -7.47 9.55 22.70 0.22 -7.25 16 13 C -0.14 -6.28 5.87 -20.14 -0.12 -6.39 16 14 C 0.57 23.37 7.77 86.80 0.67 24.04 16 15 O -0.58 -28.13 16.33 -3.86 -0.06 -28.19 16 16 N -0.71 -20.65 5.50 -469.67 -2.58 -23.24 16 17 C 0.20 4.61 6.20 85.64 0.53 5.14 16 18 C 0.01 0.23 6.68 24.98 0.17 0.39 16 19 C -0.18 -2.79 10.77 22.07 0.24 -2.55 16 20 C -0.09 -1.47 10.62 22.40 0.24 -1.24 16 21 C -0.09 -1.73 7.18 24.04 0.17 -1.56 16 22 C 0.58 11.11 8.30 69.97 0.58 11.69 16 23 O -0.52 -11.58 17.65 19.45 0.34 -11.24 16 24 O -0.50 -7.44 13.44 -56.84 -0.76 -8.21 16 25 O -0.16 -3.63 10.67 -4.94 -0.05 -3.68 16 26 C -0.13 -6.94 8.23 23.01 0.19 -6.75 16 27 H 0.29 14.46 8.30 -92.71 -0.77 13.69 16 28 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 29 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 30 H 0.13 3.84 6.38 -2.91 -0.02 3.82 16 31 H 0.41 10.10 6.48 -92.71 -0.60 9.50 16 32 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 34 H 0.19 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.19 2.16 8.06 -2.91 -0.02 2.13 16 36 H 0.44 1.73 9.11 -74.06 -0.67 1.05 16 37 H 0.10 6.08 5.77 -2.91 -0.02 6.07 16 Total: -1.00 -72.67 338.66 2.90 -69.77 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: -0.12 Total: 27.44 kcal Atomic # 6 Polarization: -22.57 SS G_CDS: 3.87 Total: -18.70 kcal Atomic # 7 Polarization: -65.97 SS G_CDS: -2.34 Total: -68.31 kcal Atomic # 8 Polarization: -50.78 SS G_CDS: -0.54 Total: -51.31 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -72.67 2.90 -69.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347395695.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.501 kcal (2) G-P(sol) polarization free energy of solvation -72.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds