Wall clock time and date at job start Tue Mar 31 2020 11:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86798 * 120.00198 * 2 1 4 4 H 1.48496 * 109.47382 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47261 * 300.00313 * 3 2 1 6 6 H 1.48504 * 109.46835 * 60.00321 * 3 2 1 7 7 C 1.38800 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00368 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00058 * 359.97438 * 7 2 1 10 10 C 1.80998 * 100.00299 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47222 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47086 * 180.02562 * 11 10 9 13 13 S 1.80997 * 109.47226 * 180.02562 * 12 11 10 14 14 C 1.76200 * 100.00198 * 179.97438 * 13 12 11 15 15 N 1.31283 * 126.48511 * 0.02836 * 14 13 12 16 16 N 1.28514 * 109.86116 * 179.97438 * 15 14 13 17 17 C 1.30300 * 110.07772 * 359.97438 * 16 15 14 18 18 C 1.50702 * 126.34300 * 180.02562 * 17 16 15 19 19 O 1.42904 * 109.47123 * 90.02344 * 18 17 16 20 20 N 1.36539 * 126.48494 * 179.71318 * 14 13 12 21 21 C 1.46500 * 127.14134 * 0.02562 * 20 14 13 22 22 C 1.52994 * 117.49971 * 16.81875 * 21 20 14 23 23 C 1.52998 * 117.49998 * 308.15854 * 21 20 14 24 24 H 0.96996 * 119.99947 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46498 * 60.00193 * 10 9 7 26 26 H 1.09001 * 109.47250 * 300.00512 * 10 9 7 27 27 H 1.09002 * 109.47149 * 60.00686 * 11 10 9 28 28 H 1.09001 * 109.47503 * 300.00452 * 11 10 9 29 29 H 1.08995 * 109.47012 * 59.99954 * 12 11 10 30 30 H 1.09001 * 109.47135 * 300.00452 * 12 11 10 31 31 H 1.08998 * 109.47558 * 210.02199 * 18 17 16 32 32 H 1.09004 * 109.46925 * 330.02462 * 18 17 16 33 33 H 0.96698 * 113.99993 * 180.02562 * 19 18 17 34 34 H 1.09003 * 115.54416 * 162.49341 * 21 20 14 35 35 H 1.08997 * 117.50221 * 0.02562 * 22 21 20 36 36 H 1.09006 * 117.49593 * 145.02001 * 22 21 20 37 37 H 1.09005 * 117.49782 * 214.98498 * 23 21 20 38 38 H 1.08997 * 117.49985 * 359.97316 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8916 2.3963 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0021 11 6 1.9792 -5.3243 -0.0017 12 6 3.1513 -6.3078 -0.0024 13 16 2.5166 -8.0028 -0.0027 14 6 4.0343 -8.8979 -0.0043 15 7 5.2429 -8.3853 -0.0044 16 7 6.1168 -9.3275 -0.0052 17 6 5.5237 -10.4877 -0.0050 18 6 6.1980 -11.8354 -0.0051 19 8 6.4111 -12.2616 1.3422 20 7 4.1759 -10.2559 0.0005 21 6 3.1062 -11.2568 0.0074 22 6 1.7017 -10.7924 -0.3830 23 6 2.0205 -11.1231 1.0771 24 1 -0.4850 0.8400 0.0004 25 1 3.1250 -3.7318 0.8875 26 1 3.1238 -3.7310 -0.8925 27 1 1.3698 -5.4843 -0.8911 28 1 1.3715 -5.4845 0.8888 29 1 3.7604 -6.1476 0.8871 30 1 3.7594 -6.1477 -0.8928 31 1 5.5648 -12.5586 -0.5190 32 1 7.1566 -11.7620 -0.5188 33 1 6.8427 -13.1235 1.4185 34 1 3.4029 -12.2639 -0.2854 35 1 1.5736 -9.7423 -0.6454 36 1 1.0741 -11.4942 -0.9325 37 1 1.6027 -12.0424 1.4878 38 1 2.1024 -10.2908 1.7761 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347747437.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:10 Heat of formation + Delta-G solvation = 47.246006 kcal Electronic energy + Delta-G solvation = -20554.703417 eV Core-core repulsion = 17265.967301 eV Total energy + Delta-G solvation = -3288.736117 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.20561 -38.17458 -37.39801 -34.37176 -33.14070 -32.42251 -31.63679 -27.56501 -26.75929 -25.45881 -24.67233 -23.13744 -22.29646 -21.68993 -20.69083 -18.31766 -18.10110 -17.47731 -17.02960 -16.24866 -15.51511 -15.36258 -15.23066 -15.15255 -14.79596 -14.57366 -14.06705 -13.93659 -13.09235 -12.77315 -12.65442 -12.34786 -12.30719 -11.97015 -11.77587 -11.66545 -11.33029 -11.07981 -11.02778 -10.84650 -10.68788 -10.65474 -10.62813 -10.29910 -10.22266 -9.94600 -9.55423 -9.05995 -8.32483 -7.84029 -6.53763 -6.22640 -3.93132 0.83598 1.18374 1.96890 2.08714 2.46122 3.11223 3.22662 3.24217 3.31831 3.53294 3.56716 3.88199 4.11796 4.20907 4.22439 4.26150 4.31315 4.65276 4.94028 5.04520 5.07597 5.11186 5.14203 5.16167 5.35803 5.38800 5.51580 5.53001 5.62149 5.65193 5.77001 5.99085 6.21811 6.35672 6.45336 6.67334 6.98642 7.62306 8.35210 8.38057 9.24206 10.85640 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.028128 B = 0.002330 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.203083 B =12014.630084 C =12833.732524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.070 3.930 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.515 4.515 8 H 0.074 0.926 9 S -0.130 6.130 10 C -0.108 4.108 11 C -0.084 4.084 12 C -0.110 4.110 13 S 0.009 5.991 14 C 0.166 3.834 15 N -0.286 5.286 16 N -0.263 5.263 17 C 0.175 3.825 18 C 0.171 3.829 19 O -0.563 6.563 20 N -0.428 5.428 21 C 0.047 3.953 22 C -0.175 4.175 23 C -0.168 4.168 24 H 0.267 0.733 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.389 0.611 34 H 0.149 0.851 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.916 -29.985 -0.784 30.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.138 4.138 3 Si 0.745 3.255 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.663 4.663 8 H 0.092 0.908 9 S 0.098 5.902 10 C -0.259 4.259 11 C -0.124 4.124 12 C -0.260 4.260 13 S 0.239 5.761 14 C -0.208 4.208 15 N -0.130 5.130 16 N -0.104 5.104 17 C -0.094 4.094 18 C 0.091 3.909 19 O -0.369 6.369 20 N -0.121 5.121 21 C -0.058 4.058 22 C -0.214 4.214 23 C -0.206 4.206 24 H 0.076 0.924 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.238 0.762 34 H 0.166 0.834 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.134 0.866 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.373 -28.866 -0.647 29.203 hybrid contribution 2.479 0.215 -0.135 2.492 sum 6.853 -28.651 -0.782 29.470 Atomic orbital electron populations 1.70028 1.05916 1.27243 1.47382 1.25020 0.95098 0.99128 0.94582 0.86100 0.79716 0.81785 0.77869 1.19547 1.20570 1.20562 1.22732 0.94616 0.90595 1.58350 0.90773 1.84601 1.09219 0.99508 1.96890 1.23243 1.03130 0.96028 1.03480 1.21076 0.95355 0.92215 1.03770 1.23947 1.02713 0.91931 1.07394 1.85506 0.97112 1.01114 1.92330 1.26951 1.02265 0.84154 1.07473 1.74782 0.94938 1.23165 1.20129 1.73966 1.24955 0.95278 1.16244 1.24507 0.79930 0.98019 1.06921 1.20075 0.98991 0.86953 0.84890 1.86570 1.83592 1.41538 1.25163 1.45856 1.06772 1.05093 1.54369 1.22108 0.82823 0.92233 1.08619 1.23805 0.94347 1.04656 0.98588 1.23535 0.99168 1.05196 0.92741 0.92355 0.91676 0.91665 0.90519 0.90524 0.88552 0.88520 0.91570 0.89504 0.76205 0.83389 0.86044 0.86187 0.86601 0.87156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.03 13.22 55.49 0.73 -25.29 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 21.75 29.55 -169.99 -5.02 16.72 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -14.83 9.50 30.94 0.29 -14.53 16 8 H 0.07 2.08 7.80 -52.49 -0.41 1.68 16 9 S -0.13 -3.39 21.44 -107.50 -2.30 -5.70 16 10 C -0.11 -2.18 5.67 37.16 0.21 -1.97 16 11 C -0.08 -1.34 5.22 -26.73 -0.14 -1.48 16 12 C -0.11 -1.57 5.23 37.16 0.19 -1.37 16 13 S 0.01 0.11 17.81 -107.50 -1.91 -1.80 16 14 C 0.17 2.32 7.89 -88.34 -0.70 1.62 16 15 N -0.29 -4.77 11.60 30.68 0.36 -4.42 16 16 N -0.26 -4.17 12.17 33.00 0.40 -3.77 16 17 C 0.18 2.14 7.70 -153.99 -1.19 0.95 16 18 C 0.17 1.19 7.41 36.01 0.27 1.46 16 19 O -0.56 -4.14 13.64 -35.23 -0.48 -4.62 16 20 N -0.43 -4.93 3.16 -106.47 -0.34 -5.26 16 21 C 0.05 0.34 6.72 -67.93 -0.46 -0.11 16 22 C -0.18 -1.15 9.71 -26.70 -0.26 -1.41 16 23 C -0.17 -1.11 10.02 -26.70 -0.27 -1.38 16 24 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.06 1.31 8.14 -51.91 -0.42 0.89 16 26 H 0.06 1.31 8.14 -51.92 -0.42 0.88 16 27 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.10 1.42 8.14 -51.92 -0.42 1.00 16 30 H 0.10 1.41 8.14 -51.91 -0.42 0.99 16 31 H 0.07 0.24 7.39 -51.93 -0.38 -0.14 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.39 0.59 9.12 45.56 0.42 1.01 16 34 H 0.15 0.64 7.40 -51.93 -0.38 0.26 16 35 H 0.12 1.04 4.39 -28.47 -0.12 0.91 16 36 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.11 0.94 7.89 -51.93 -0.41 0.53 16 LS Contribution 350.06 15.07 5.28 5.28 Total: -1.00 -36.77 350.06 -9.66 -46.44 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -4.24 Total: -1.27 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -2.13 Total: -16.30 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 1.16 Total: -38.75 kcal Atomic # 8 Polarization: -4.14 SS G_CDS: -0.48 Total: -4.62 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -3.28 SS G_CDS: -4.22 Total: -7.50 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.77 -9.66 -46.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347747437.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.684 kcal (2) G-P(sol) polarization free energy of solvation -36.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds