Wall clock time and date at job start Tue Mar 31 2020 11:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86798 * 120.00198 * 2 1 4 4 H 1.48496 * 109.47382 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47261 * 300.00313 * 3 2 1 6 6 H 1.48504 * 109.46835 * 60.00321 * 3 2 1 7 7 C 1.38800 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00368 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00058 * 359.97438 * 7 2 1 10 10 C 1.80998 * 100.00299 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47222 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47086 * 180.02562 * 11 10 9 13 13 S 1.80997 * 109.47226 * 180.02562 * 12 11 10 14 14 C 1.76200 * 100.00198 * 179.97438 * 13 12 11 15 15 N 1.31283 * 126.48511 * 0.02836 * 14 13 12 16 16 N 1.28514 * 109.86116 * 179.97438 * 15 14 13 17 17 C 1.30300 * 110.07772 * 359.97438 * 16 15 14 18 18 C 1.50702 * 126.34300 * 180.02562 * 17 16 15 19 19 O 1.42904 * 109.47123 * 90.02344 * 18 17 16 20 20 N 1.36539 * 126.48494 * 179.71318 * 14 13 12 21 21 C 1.46500 * 127.14134 * 0.02562 * 20 14 13 22 22 C 1.52994 * 117.49971 * 16.81875 * 21 20 14 23 23 C 1.52998 * 117.49998 * 308.15854 * 21 20 14 24 24 H 0.96996 * 119.99947 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46498 * 60.00193 * 10 9 7 26 26 H 1.09001 * 109.47250 * 300.00512 * 10 9 7 27 27 H 1.09002 * 109.47149 * 60.00686 * 11 10 9 28 28 H 1.09001 * 109.47503 * 300.00452 * 11 10 9 29 29 H 1.08995 * 109.47012 * 59.99954 * 12 11 10 30 30 H 1.09001 * 109.47135 * 300.00452 * 12 11 10 31 31 H 1.08998 * 109.47558 * 210.02199 * 18 17 16 32 32 H 1.09004 * 109.46925 * 330.02462 * 18 17 16 33 33 H 0.96698 * 113.99993 * 180.02562 * 19 18 17 34 34 H 1.09003 * 115.54416 * 162.49341 * 21 20 14 35 35 H 1.08997 * 117.50221 * 0.02562 * 22 21 20 36 36 H 1.09006 * 117.49593 * 145.02001 * 22 21 20 37 37 H 1.09005 * 117.49782 * 214.98498 * 23 21 20 38 38 H 1.08997 * 117.49985 * 359.97316 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8916 2.3963 1.2126 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8915 -0.0021 11 6 1.9792 -5.3243 -0.0017 12 6 3.1513 -6.3078 -0.0024 13 16 2.5166 -8.0028 -0.0027 14 6 4.0343 -8.8979 -0.0043 15 7 5.2429 -8.3853 -0.0044 16 7 6.1168 -9.3275 -0.0052 17 6 5.5237 -10.4877 -0.0050 18 6 6.1980 -11.8354 -0.0051 19 8 6.4111 -12.2616 1.3422 20 7 4.1759 -10.2559 0.0005 21 6 3.1062 -11.2568 0.0074 22 6 1.7017 -10.7924 -0.3830 23 6 2.0205 -11.1231 1.0771 24 1 -0.4850 0.8400 0.0004 25 1 3.1250 -3.7318 0.8875 26 1 3.1238 -3.7310 -0.8925 27 1 1.3698 -5.4843 -0.8911 28 1 1.3715 -5.4845 0.8888 29 1 3.7604 -6.1476 0.8871 30 1 3.7594 -6.1477 -0.8928 31 1 5.5648 -12.5586 -0.5190 32 1 7.1566 -11.7620 -0.5188 33 1 6.8427 -13.1235 1.4185 34 1 3.4029 -12.2639 -0.2854 35 1 1.5736 -9.7423 -0.6454 36 1 1.0741 -11.4942 -0.9325 37 1 1.6027 -12.0424 1.4878 38 1 2.1024 -10.2908 1.7761 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347747437.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:09 Heat of formation + Delta-G solvation = 21.988786 kcal Electronic energy + Delta-G solvation = -20555.798652 eV Core-core repulsion = 17265.967301 eV Total energy + Delta-G solvation = -3289.831352 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.14051 -38.79297 -37.89565 -35.76718 -34.60904 -33.96425 -32.52251 -28.77042 -27.89353 -27.46757 -25.46395 -23.66690 -23.31183 -22.78195 -21.61780 -19.59084 -19.01814 -18.69550 -17.85716 -17.16024 -16.90673 -16.56802 -16.51931 -16.11583 -15.84267 -15.63812 -15.18351 -14.97406 -14.59203 -14.13127 -13.61851 -13.43419 -13.24625 -13.08308 -12.98016 -12.95582 -12.77141 -12.65624 -12.44843 -12.08446 -12.02501 -11.68544 -11.51546 -11.28582 -11.18825 -11.16451 -11.13038 -10.70915 -10.36261 -8.82361 -8.67537 -8.38907 -6.14735 -0.15995 0.30040 0.87245 1.30706 1.33018 1.37579 1.46887 1.48763 1.73909 2.26242 2.58911 2.93634 2.95498 3.28750 3.30274 3.64727 3.67476 3.72782 3.80229 3.83353 3.90760 4.10346 4.15169 4.24924 4.29985 4.53669 4.61824 4.65838 4.71154 4.76239 4.78830 4.96902 4.97452 5.03895 5.14428 5.39752 5.60813 6.17597 6.81747 7.03898 7.35937 8.70704 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.028128 B = 0.002330 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.203083 B =12014.630084 C =12833.732524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.016 3.984 3 Si 0.993 3.007 4 H -0.265 1.265 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.539 4.539 8 H 0.071 0.929 9 S -0.185 6.185 10 C -0.087 4.087 11 C -0.070 4.070 12 C -0.114 4.114 13 S 0.058 5.942 14 C 0.147 3.853 15 N -0.329 5.329 16 N -0.313 5.313 17 C 0.182 3.818 18 C 0.172 3.828 19 O -0.586 6.586 20 N -0.425 5.425 21 C 0.030 3.970 22 C -0.172 4.172 23 C -0.166 4.166 24 H 0.272 0.728 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.109 0.891 32 H 0.098 0.902 33 H 0.414 0.586 34 H 0.187 0.813 35 H 0.099 0.901 36 H 0.153 0.847 37 H 0.146 0.854 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.042 -32.518 -1.044 33.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.189 4.189 3 Si 0.816 3.184 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.687 4.687 8 H 0.089 0.911 9 S 0.044 5.956 10 C -0.238 4.238 11 C -0.111 4.111 12 C -0.264 4.264 13 S 0.288 5.712 14 C -0.228 4.228 15 N -0.174 5.174 16 N -0.155 5.155 17 C -0.089 4.089 18 C 0.092 3.908 19 O -0.396 6.396 20 N -0.117 5.117 21 C -0.072 4.072 22 C -0.210 4.210 23 C -0.204 4.204 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.126 0.874 32 H 0.116 0.884 33 H 0.267 0.733 34 H 0.204 0.796 35 H 0.117 0.883 36 H 0.170 0.830 37 H 0.164 0.836 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.501 -31.434 -0.902 31.767 hybrid contribution 2.439 0.796 -0.032 2.565 sum 6.940 -30.638 -0.934 31.428 Atomic orbital electron populations 1.70144 1.07552 1.28533 1.47958 1.26043 0.96068 1.03020 0.93753 0.84978 0.78333 0.76749 0.78388 1.18962 1.19523 1.19556 1.23066 0.94726 0.92054 1.58863 0.91104 1.84514 1.13218 1.00830 1.97040 1.23166 1.00557 0.96765 1.03289 1.20903 0.95896 0.90003 1.04261 1.23732 1.01749 0.94178 1.06730 1.85328 0.95375 0.98198 1.92325 1.27163 1.02098 0.85709 1.07868 1.74645 0.96171 1.24741 1.21826 1.73847 1.26058 0.96694 1.18860 1.25514 0.80273 0.99058 1.04006 1.20363 1.00012 0.85157 0.85270 1.86491 1.84196 1.43616 1.25335 1.46160 1.07626 1.04734 1.53217 1.22751 0.82183 0.92748 1.09537 1.23868 0.94268 1.03921 0.98964 1.23613 0.98760 1.05716 0.92342 0.91885 0.91882 0.91730 0.89908 0.90107 0.89447 0.89106 0.87362 0.88403 0.73310 0.79632 0.88295 0.82967 0.83575 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.88 13.22 21.65 0.29 -54.59 16 2 C 0.02 0.94 5.49 84.86 0.47 1.40 16 3 Si 0.99 44.76 29.55 68.60 2.03 46.78 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.54 -31.67 9.50 67.95 0.65 -31.02 16 8 H 0.07 4.06 7.80 -2.91 -0.02 4.04 16 9 S -0.18 -9.86 21.44 -56.49 -1.21 -11.08 16 10 C -0.09 -3.58 5.67 71.98 0.41 -3.17 16 11 C -0.07 -2.26 5.22 30.59 0.16 -2.10 16 12 C -0.11 -3.29 5.23 71.98 0.38 -2.91 16 13 S 0.06 1.40 17.81 -56.49 -1.01 0.39 16 14 C 0.15 4.10 7.89 179.55 1.42 5.52 16 15 N -0.33 -11.34 11.60 -56.85 -0.66 -12.00 16 16 N -0.31 -10.14 12.17 -49.52 -0.60 -10.74 16 17 C 0.18 4.23 7.70 137.63 1.06 5.29 16 18 C 0.17 1.91 7.41 71.24 0.53 2.44 16 19 O -0.59 -7.12 13.64 -148.98 -2.03 -9.15 16 20 N -0.42 -9.18 3.16 -490.76 -1.55 -10.73 16 21 C 0.03 0.35 6.72 44.99 0.30 0.65 16 22 C -0.17 -1.74 9.71 30.62 0.30 -1.45 16 23 C -0.17 -1.73 10.02 30.62 0.31 -1.42 16 24 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 25 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 26 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 27 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 29 H 0.09 2.67 8.14 -2.40 -0.02 2.66 16 30 H 0.09 2.73 8.14 -2.40 -0.02 2.71 16 31 H 0.11 0.29 7.39 -2.39 -0.02 0.27 16 32 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.41 0.02 9.12 -74.06 -0.68 -0.65 16 34 H 0.19 0.67 7.40 -2.39 -0.02 0.66 16 35 H 0.10 1.50 4.39 -17.31 -0.08 1.43 16 36 H 0.15 0.57 8.14 -2.38 -0.02 0.55 16 37 H 0.15 0.62 8.14 -2.38 -0.02 0.60 16 38 H 0.09 1.36 7.89 -2.39 -0.02 1.34 16 Total: -1.00 -83.13 350.06 1.56 -81.57 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: 0.35 Total: 6.33 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: 5.97 Total: -26.78 kcal Atomic # 7 Polarization: -85.54 SS G_CDS: -2.53 Total: -88.06 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -2.03 Total: -9.15 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Atomic # 16 Polarization: -8.47 SS G_CDS: -2.22 Total: -10.69 kcal Total: -83.13 1.56 -81.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347747437.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.558 kcal (2) G-P(sol) polarization free energy of solvation -83.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds