Wall clock time and date at job start Tue Mar 31 2020 10:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47277 * 2 1 4 4 C 1.46506 * 119.99936 * 84.99719 * 3 2 1 5 5 C 1.50701 * 109.46970 * 85.00357 * 4 3 2 6 6 H 1.08005 * 119.99694 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00052 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00074 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00171 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47010 * 90.00165 * 9 7 5 11 11 H 1.48496 * 109.47338 * 210.00715 * 9 7 5 12 12 H 1.48504 * 109.46968 * 330.00328 * 9 7 5 13 13 S 1.65597 * 119.99926 * 265.27680 * 3 2 1 14 14 O 1.42095 * 106.40469 * 23.26116 * 13 3 2 15 15 O 1.42098 * 106.40441 * 156.18457 * 13 3 2 16 16 C 1.76207 * 107.21624 * 269.72430 * 13 3 2 17 17 C 1.38302 * 119.91346 * 269.72377 * 16 13 3 18 18 C 1.38086 * 120.07452 * 179.76614 * 17 16 13 19 19 C 1.38980 * 119.92033 * 0.50951 * 18 17 16 20 20 S 1.76201 * 120.08106 * 179.72288 * 19 18 17 21 21 C 1.81402 * 103.00024 * 0.02562 * 20 19 18 22 22 C 1.38979 * 119.83756 * 359.74482 * 19 18 17 23 23 C 1.38086 * 119.91744 * 0.02562 * 22 19 18 24 24 H 1.08995 * 109.46954 * 59.99844 * 1 2 3 25 25 H 1.08996 * 109.47521 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47307 * 300.00055 * 1 2 3 27 27 H 1.08991 * 109.46933 * 239.99603 * 2 1 3 28 28 H 1.09000 * 109.46920 * 119.99673 * 2 1 3 29 29 H 1.08999 * 109.46864 * 204.99706 * 4 3 2 30 30 H 1.08999 * 109.46950 * 325.00088 * 4 3 2 31 31 H 0.97000 * 120.00214 * 179.97438 * 8 7 5 32 32 H 1.07995 * 119.96613 * 359.97438 * 17 16 13 33 33 H 1.07996 * 120.04121 * 180.25428 * 18 17 16 34 34 H 1.09002 * 109.47158 * 300.00088 * 21 20 19 35 35 H 1.08995 * 109.46749 * 59.99600 * 21 20 19 36 36 H 1.08992 * 109.46997 * 179.97438 * 21 20 19 37 37 H 1.08003 * 120.03801 * 179.97438 * 22 19 18 38 38 H 1.07997 * 119.95287 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 1.2640 5 6 3.4948 1.7888 1.8824 6 1 4.1721 1.1111 1.3839 7 6 3.8525 2.3605 3.0849 8 7 5.0191 2.0818 3.6243 9 14 2.6808 3.5322 3.9473 10 1 1.7954 2.7646 4.8595 11 1 3.4601 4.5233 4.7318 12 1 1.8553 4.2402 2.9360 13 16 2.4057 2.1224 -1.4293 14 8 1.6809 1.4412 -2.4440 15 8 2.2940 3.5203 -1.1995 16 6 4.1112 1.8034 -1.7368 17 6 5.0725 2.6787 -1.2652 18 6 6.4102 2.4295 -1.5001 19 6 6.7894 1.3030 -2.2204 20 16 8.4948 0.9847 -2.5289 21 6 9.3233 2.3812 -1.7202 22 6 5.8202 0.4285 -2.6972 23 6 4.4846 0.6818 -2.4544 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0923 3.1802 1.0756 30 1 1.3617 1.8097 1.9453 31 1 5.2709 2.4843 4.4702 32 1 4.7769 3.5564 -0.7097 33 1 7.1607 3.1112 -1.1281 34 1 8.9835 3.3146 -2.1689 35 1 9.0825 2.3803 -0.6572 36 1 10.4016 2.2874 -1.8483 37 1 6.1112 -0.4476 -3.2577 38 1 3.7310 0.0028 -2.8250 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348307778.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:49 Heat of formation + Delta-G solvation = -46.616359 kcal Electronic energy + Delta-G solvation = -22608.831753 eV Core-core repulsion = 19283.732708 eV Total energy + Delta-G solvation = -3325.099045 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.81225 -36.79003 -36.21635 -35.33253 -32.67737 -31.41406 -30.98026 -30.25926 -28.92689 -27.18456 -23.29712 -22.94897 -22.55352 -21.54913 -18.60570 -17.86326 -17.17857 -16.97564 -16.62766 -15.84271 -15.06863 -14.85427 -14.57407 -14.25491 -13.99673 -13.94149 -13.54833 -13.46362 -12.95399 -12.86831 -12.74808 -12.48724 -12.20717 -12.12587 -11.90652 -11.59211 -11.48965 -11.24239 -11.16769 -11.01695 -10.71552 -10.59663 -10.40685 -10.17761 -10.13288 -9.95421 -9.62109 -8.86195 -8.68528 -8.15974 -7.55448 -6.18741 -4.19627 0.79504 1.09106 1.42260 1.51752 2.26920 3.22025 3.29762 3.35351 3.40182 3.75389 4.27762 4.32114 4.69570 4.92592 4.97089 4.97099 5.02569 5.14050 5.32739 5.40418 5.53484 5.60760 5.69657 5.73196 5.76115 5.99729 6.08448 6.16349 6.22781 6.26985 6.35120 6.48926 6.59351 6.81370 6.95401 7.07784 7.34112 7.50251 8.37742 8.85838 9.41577 10.93486 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.011651 B = 0.006013 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.634854 B = 4655.563746 C = 6222.063048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.126 3.874 3 N -0.976 5.976 4 C 0.212 3.788 5 C -0.542 4.542 6 H 0.081 0.919 7 C 0.077 3.923 8 N -0.893 5.893 9 Si 0.865 3.135 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.259 1.259 13 S 2.693 3.307 14 O -0.974 6.974 15 O -0.961 6.961 16 C -0.670 4.670 17 C 0.027 3.973 18 C -0.153 4.153 19 C -0.036 4.036 20 S -0.117 6.117 21 C -0.147 4.147 22 C -0.129 4.129 23 C -0.006 4.006 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.049 0.951 30 H 0.036 0.964 31 H 0.265 0.735 32 H 0.146 0.854 33 H 0.130 0.870 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.132 0.868 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.463 -2.195 -10.311 10.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.000 4.000 3 N -0.814 5.814 4 C 0.089 3.911 5 C -0.581 4.581 6 H 0.099 0.901 7 C -0.126 4.126 8 N -0.531 5.531 9 Si 0.691 3.309 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.183 1.183 13 S 2.783 3.217 14 O -0.964 6.964 15 O -0.952 6.952 16 C -0.758 4.758 17 C 0.006 3.994 18 C -0.177 4.177 19 C -0.150 4.150 20 S 0.126 5.874 21 C -0.315 4.315 22 C -0.154 4.154 23 C -0.028 4.028 24 H 0.076 0.924 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.163 0.837 33 H 0.148 0.852 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.126 0.874 37 H 0.150 0.850 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.722 -2.557 -11.248 11.852 hybrid contribution -0.184 1.267 1.671 2.105 sum 2.538 -1.290 -9.577 9.991 Atomic orbital electron populations 1.22226 0.96682 1.01717 1.02392 1.21083 0.93675 0.82325 1.02884 1.57182 1.78361 1.23237 1.22661 1.19654 0.98100 0.92515 0.80857 1.21462 1.01026 1.29164 1.06445 0.90133 1.24840 0.94987 0.95979 0.96816 1.69897 1.20588 1.43779 1.18793 0.87010 0.81690 0.81680 0.80520 1.19941 1.20946 1.18322 1.01821 0.73739 0.73553 0.72630 1.93516 1.70083 1.75754 1.57076 1.93534 1.86194 1.30120 1.85324 1.31112 1.26510 1.05322 1.12902 1.20822 0.91612 0.96513 0.90460 1.21229 0.97235 0.97708 1.01545 1.21961 0.96733 0.97452 0.98830 1.85331 0.97372 1.35112 1.69536 1.23725 1.03812 0.99412 1.04555 1.20732 0.91985 0.99692 1.02959 1.20757 0.96106 0.93761 0.92148 0.92406 0.91999 0.92212 0.91359 0.89697 0.93274 0.94609 0.92532 0.83666 0.85196 0.89520 0.89028 0.87364 0.85038 0.84245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 10.24 37.16 0.38 -2.09 16 2 C 0.13 2.08 6.06 -4.04 -0.02 2.06 16 3 N -0.98 -19.15 2.77 -115.66 -0.32 -19.47 16 4 C 0.21 4.78 4.51 -5.19 -0.02 4.76 16 5 C -0.54 -14.06 9.94 -34.44 -0.34 -14.40 16 6 H 0.08 2.26 8.06 -52.48 -0.42 1.84 16 7 C 0.08 2.08 5.47 -17.82 -0.10 1.99 16 8 N -0.89 -25.65 13.96 55.43 0.77 -24.87 16 9 Si 0.86 20.24 27.47 -169.99 -4.67 15.57 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.26 -5.89 6.54 56.52 0.37 -5.52 16 13 S 2.69 52.08 5.65 -107.50 -0.61 51.47 16 14 O -0.97 -18.72 16.24 -57.17 -0.93 -19.65 16 15 O -0.96 -20.91 15.82 -57.17 -0.90 -21.81 16 16 C -0.67 -12.22 5.98 -39.54 -0.24 -12.46 16 17 C 0.03 0.50 9.51 -39.61 -0.38 0.12 16 18 C -0.15 -2.51 9.36 -39.36 -0.37 -2.87 16 19 C -0.04 -0.56 6.11 -39.03 -0.24 -0.80 16 20 S -0.12 -1.47 22.56 -107.50 -2.43 -3.90 16 21 C -0.15 -1.44 9.15 101.05 0.92 -0.52 16 22 C -0.13 -1.94 9.79 -39.36 -0.39 -2.33 16 23 C -0.01 -0.10 9.51 -39.62 -0.38 -0.48 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.07 1.00 7.61 -51.93 -0.40 0.60 16 28 H 0.08 1.41 8.11 -51.93 -0.42 0.99 16 29 H 0.05 1.15 5.97 -51.93 -0.31 0.84 16 30 H 0.04 0.78 7.54 -51.93 -0.39 0.38 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.15 2.71 7.60 -52.49 -0.40 2.31 16 33 H 0.13 1.84 5.88 -52.49 -0.31 1.53 16 34 H 0.09 0.78 7.75 -51.92 -0.40 0.37 16 35 H 0.09 0.97 7.75 -51.93 -0.40 0.56 16 36 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.13 1.62 8.06 -52.48 -0.42 1.20 16 38 H 0.14 1.92 7.61 -52.49 -0.40 1.52 16 LS Contribution 343.66 15.07 5.18 5.18 Total: -1.00 -31.35 343.66 -10.20 -41.55 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -5.13 Total: 2.95 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: -1.17 Total: -27.02 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: 0.45 Total: -44.34 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -1.83 Total: -41.46 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.67 Total: 15.57 kcal Atomic # 16 Polarization: 50.60 SS G_CDS: -3.03 Total: 47.57 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.35 -10.20 -41.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348307778.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.066 kcal (2) G-P(sol) polarization free energy of solvation -31.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds