Wall clock time and date at job start Tue Mar 31 2020 10:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47277 * 2 1 4 4 C 1.46506 * 119.99936 * 84.99719 * 3 2 1 5 5 C 1.50701 * 109.46970 * 85.00357 * 4 3 2 6 6 H 1.08005 * 119.99694 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00052 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00074 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 120.00171 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47010 * 90.00165 * 9 7 5 11 11 H 1.48496 * 109.47338 * 210.00715 * 9 7 5 12 12 H 1.48504 * 109.46968 * 330.00328 * 9 7 5 13 13 S 1.65597 * 119.99926 * 265.27680 * 3 2 1 14 14 O 1.42095 * 106.40469 * 23.26116 * 13 3 2 15 15 O 1.42098 * 106.40441 * 156.18457 * 13 3 2 16 16 C 1.76207 * 107.21624 * 269.72430 * 13 3 2 17 17 C 1.38302 * 119.91346 * 269.72377 * 16 13 3 18 18 C 1.38086 * 120.07452 * 179.76614 * 17 16 13 19 19 C 1.38980 * 119.92033 * 0.50951 * 18 17 16 20 20 S 1.76201 * 120.08106 * 179.72288 * 19 18 17 21 21 C 1.81402 * 103.00024 * 0.02562 * 20 19 18 22 22 C 1.38979 * 119.83756 * 359.74482 * 19 18 17 23 23 C 1.38086 * 119.91744 * 0.02562 * 22 19 18 24 24 H 1.08995 * 109.46954 * 59.99844 * 1 2 3 25 25 H 1.08996 * 109.47521 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47307 * 300.00055 * 1 2 3 27 27 H 1.08991 * 109.46933 * 239.99603 * 2 1 3 28 28 H 1.09000 * 109.46920 * 119.99673 * 2 1 3 29 29 H 1.08999 * 109.46864 * 204.99706 * 4 3 2 30 30 H 1.08999 * 109.46950 * 325.00088 * 4 3 2 31 31 H 0.97000 * 120.00214 * 179.97438 * 8 7 5 32 32 H 1.07995 * 119.96613 * 359.97438 * 17 16 13 33 33 H 1.07996 * 120.04121 * 180.25428 * 18 17 16 34 34 H 1.09002 * 109.47158 * 300.00088 * 21 20 19 35 35 H 1.08995 * 109.46749 * 59.99600 * 21 20 19 36 36 H 1.08992 * 109.46997 * 179.97438 * 21 20 19 37 37 H 1.08003 * 120.03801 * 179.97438 * 22 19 18 38 38 H 1.07997 * 119.95287 * 179.97438 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 1.2640 5 6 3.4948 1.7888 1.8824 6 1 4.1721 1.1111 1.3839 7 6 3.8525 2.3605 3.0849 8 7 5.0191 2.0818 3.6243 9 14 2.6808 3.5322 3.9473 10 1 1.7954 2.7646 4.8595 11 1 3.4601 4.5233 4.7318 12 1 1.8553 4.2402 2.9360 13 16 2.4057 2.1224 -1.4293 14 8 1.6809 1.4412 -2.4440 15 8 2.2940 3.5203 -1.1995 16 6 4.1112 1.8034 -1.7368 17 6 5.0725 2.6787 -1.2652 18 6 6.4102 2.4295 -1.5001 19 6 6.7894 1.3030 -2.2204 20 16 8.4948 0.9847 -2.5289 21 6 9.3233 2.3812 -1.7202 22 6 5.8202 0.4285 -2.6972 23 6 4.4846 0.6818 -2.4544 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0923 3.1802 1.0756 30 1 1.3617 1.8097 1.9453 31 1 5.2709 2.4843 4.4702 32 1 4.7769 3.5564 -0.7097 33 1 7.1607 3.1112 -1.1281 34 1 8.9835 3.3146 -2.1689 35 1 9.0825 2.3803 -0.6572 36 1 10.4016 2.2874 -1.8483 37 1 6.1112 -0.4476 -3.2577 38 1 3.7310 0.0028 -2.8250 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348307778.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:48 Heat of formation + Delta-G solvation = -66.254915 kcal Electronic energy + Delta-G solvation = -22609.683345 eV Core-core repulsion = 19283.732708 eV Total energy + Delta-G solvation = -3325.950637 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.075 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.06786 -38.35914 -37.77236 -36.91877 -34.65293 -32.64141 -32.24704 -31.78345 -29.78965 -28.93034 -24.70770 -24.45418 -23.82954 -23.12927 -20.05621 -19.21629 -18.93792 -18.56892 -18.10009 -17.35543 -16.51902 -16.08639 -15.97453 -15.77236 -15.47959 -14.91525 -14.75829 -14.70453 -14.56761 -14.22011 -14.01460 -13.93232 -13.76818 -13.45499 -13.27523 -13.15845 -13.08317 -12.71791 -12.64646 -12.48087 -12.28341 -12.10791 -11.88405 -11.70136 -11.59593 -11.34541 -11.19372 -10.74738 -10.14144 -9.77336 -8.60699 -8.26711 -6.30772 -0.61110 -0.30797 0.24064 0.39760 1.28624 1.36805 1.41034 1.50565 1.95293 2.36047 2.38449 2.78365 3.08074 3.28401 3.69482 3.79289 3.95195 4.16119 4.18147 4.21031 4.32702 4.45467 4.48690 4.51075 4.72772 4.79084 4.82968 4.90165 4.93819 5.00527 5.01713 5.03154 5.08869 5.42792 5.44168 5.49218 5.69113 5.80361 6.32604 6.74381 7.33191 8.88399 Molecular weight = 315.07amu Principal moments of inertia in cm(-1) A = 0.011651 B = 0.006013 C = 0.004499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.634854 B = 4655.563746 C = 6222.063048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.115 3.885 3 N -0.981 5.981 4 C 0.218 3.782 5 C -0.533 4.533 6 H 0.049 0.951 7 C 0.024 3.976 8 N -0.937 5.937 9 Si 0.921 3.079 10 H -0.260 1.260 11 H -0.284 1.284 12 H -0.249 1.249 13 S 2.701 3.299 14 O -0.974 6.974 15 O -0.992 6.992 16 C -0.687 4.687 17 C 0.000 4.000 18 C -0.164 4.164 19 C -0.045 4.045 20 S -0.104 6.104 21 C -0.147 4.147 22 C -0.131 4.131 23 C -0.011 4.011 24 H 0.052 0.948 25 H 0.091 0.909 26 H 0.056 0.944 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.041 0.959 30 H 0.051 0.949 31 H 0.266 0.734 32 H 0.129 0.871 33 H 0.146 0.854 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.136 0.864 37 H 0.162 0.838 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.395 -2.967 -11.060 11.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.010 4.010 3 N -0.819 5.819 4 C 0.094 3.906 5 C -0.572 4.572 6 H 0.067 0.933 7 C -0.175 4.175 8 N -0.577 5.577 9 Si 0.744 3.256 10 H -0.185 1.185 11 H -0.210 1.210 12 H -0.173 1.173 13 S 2.794 3.206 14 O -0.964 6.964 15 O -0.982 6.982 16 C -0.777 4.777 17 C -0.021 4.021 18 C -0.189 4.189 19 C -0.158 4.158 20 S 0.140 5.860 21 C -0.315 4.315 22 C -0.155 4.155 23 C -0.032 4.032 24 H 0.071 0.929 25 H 0.110 0.890 26 H 0.075 0.925 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.147 0.853 33 H 0.163 0.837 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.154 0.846 37 H 0.180 0.820 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 2.621 -3.343 -12.012 12.741 hybrid contribution 0.011 1.425 1.806 2.301 sum 2.631 -1.918 -10.206 10.713 Atomic orbital electron populations 1.22214 0.94879 1.03616 1.01997 1.21387 0.95253 0.80737 1.03642 1.57158 1.78860 1.24404 1.21481 1.19414 0.96559 0.92437 0.82204 1.21602 1.01858 1.27737 1.06016 0.93289 1.25600 0.96438 0.97716 0.97767 1.70024 1.22576 1.45560 1.19510 0.86104 0.79939 0.79798 0.79724 1.18482 1.20995 1.17269 1.01369 0.74044 0.72799 0.72428 1.93501 1.70569 1.75514 1.56815 1.93486 1.86923 1.32111 1.85726 1.30893 1.25382 1.06746 1.14722 1.20845 0.92959 0.96663 0.91663 1.21436 0.96754 0.98718 1.01945 1.22337 0.99020 0.96785 0.97707 1.85284 0.95062 1.36370 1.69275 1.23883 1.05160 0.98709 1.03782 1.21147 0.91478 1.00376 1.02482 1.21092 0.97428 0.93217 0.91462 0.92874 0.88982 0.92512 0.89445 0.90169 0.94149 0.93127 0.92516 0.85319 0.83658 0.88466 0.89795 0.84587 0.82043 0.82044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.52 10.24 71.98 0.74 -3.79 16 2 C 0.11 3.64 6.06 86.38 0.52 4.17 16 3 N -0.98 -38.31 2.77 -519.85 -1.44 -39.75 16 4 C 0.22 9.85 4.51 85.63 0.39 10.24 16 5 C -0.53 -28.15 9.94 25.60 0.25 -27.90 16 6 H 0.05 2.85 8.06 -2.91 -0.02 2.82 16 7 C 0.02 1.31 5.47 84.65 0.46 1.77 16 8 N -0.94 -54.96 13.96 21.44 0.30 -54.66 16 9 Si 0.92 41.56 27.47 68.60 1.88 43.45 16 10 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 13 S 2.70 105.05 5.65 -56.49 -0.32 104.73 16 14 O -0.97 -36.64 16.24 -128.00 -2.08 -38.72 16 15 O -0.99 -44.18 15.82 -128.00 -2.02 -46.21 16 16 C -0.69 -25.33 5.98 22.30 0.13 -25.20 16 17 C 0.00 0.01 9.51 22.25 0.21 0.22 16 18 C -0.16 -5.42 9.36 22.41 0.21 -5.21 16 19 C -0.05 -1.34 6.11 22.63 0.14 -1.20 16 20 S -0.10 -2.41 22.56 -56.49 -1.27 -3.69 16 21 C -0.15 -2.59 9.15 113.37 1.04 -1.55 16 22 C -0.13 -3.71 9.79 22.41 0.22 -3.49 16 23 C -0.01 -0.34 9.51 22.25 0.21 -0.12 16 24 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 27 H 0.09 2.41 7.61 -2.39 -0.02 2.39 16 28 H 0.08 2.61 8.11 -2.39 -0.02 2.59 16 29 H 0.04 1.91 5.97 -2.39 -0.01 1.89 16 30 H 0.05 2.13 7.54 -2.39 -0.02 2.12 16 31 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 32 H 0.13 5.16 7.60 -2.91 -0.02 5.14 16 33 H 0.15 4.13 5.88 -2.91 -0.02 4.11 16 34 H 0.10 1.54 7.75 -2.39 -0.02 1.52 16 35 H 0.08 1.66 7.75 -2.39 -0.02 1.64 16 36 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 38 H 0.16 4.15 7.61 -2.91 -0.02 4.13 16 Total: -1.00 -67.81 343.66 0.57 -67.24 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: 1.00 Total: 19.68 kcal Atomic # 6 Polarization: -56.59 SS G_CDS: 4.52 Total: -52.06 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -1.14 Total: -94.41 kcal Atomic # 8 Polarization: -80.83 SS G_CDS: -4.10 Total: -84.93 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 1.88 Total: 43.45 kcal Atomic # 16 Polarization: 102.64 SS G_CDS: -1.59 Total: 101.04 kcal Total: -67.81 0.57 -67.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348307778.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.981 kcal (2) G-P(sol) polarization free energy of solvation -67.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds