Wall clock time and date at job start Tue Mar 31 2020 10:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47227 * 2 1 4 4 C 1.37092 * 119.99677 * 275.12324 * 3 2 1 5 5 H 1.08004 * 119.99701 * 144.38929 * 4 3 2 6 6 C 1.38946 * 120.00225 * 324.38757 * 4 3 2 7 7 N 1.31409 * 119.99902 * 1.58838 * 6 4 3 8 8 Si 1.86801 * 120.00075 * 181.59274 * 6 4 3 9 9 H 1.48499 * 109.47520 * 59.99780 * 8 6 4 10 10 H 1.48503 * 109.47204 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46821 * 299.99762 * 8 6 4 12 12 C 1.34775 * 120.00207 * 95.12213 * 3 2 1 13 13 O 1.21285 * 120.00455 * 187.78647 * 12 3 2 14 14 C 1.50703 * 119.99907 * 7.77743 * 12 3 2 15 15 H 1.08998 * 109.47558 * 308.32621 * 14 12 3 16 16 O 1.42902 * 109.47399 * 188.32646 * 14 12 3 17 17 C 1.53003 * 109.46820 * 68.32689 * 14 12 3 18 18 C 1.50706 * 109.47042 * 189.80580 * 17 14 12 19 19 C 1.38459 * 120.02083 * 89.99584 * 18 17 14 20 20 F 1.35103 * 120.01928 * 359.97438 * 19 18 17 21 21 C 1.38438 * 119.96437 * 180.02562 * 19 18 17 22 22 C 1.38233 * 120.00230 * 0.02562 * 21 19 18 23 23 C 1.38202 * 120.03230 * 359.97438 * 22 21 19 24 24 C 1.38293 * 120.01879 * 269.72734 * 18 17 14 25 25 Cl 1.73599 * 119.99922 * 359.97438 * 24 18 17 26 26 H 1.09005 * 109.47330 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.47224 * 299.99818 * 1 2 3 28 28 H 1.08994 * 109.47287 * 60.00021 * 1 2 3 29 29 H 1.08998 * 109.47338 * 239.99693 * 2 1 3 30 30 H 1.09006 * 109.46979 * 119.99692 * 2 1 3 31 31 H 0.97001 * 119.99851 * 180.02562 * 7 6 4 32 32 H 0.96705 * 113.99820 * 300.00079 * 16 14 12 33 33 H 1.09000 * 109.47457 * 69.80950 * 17 14 12 34 34 H 1.08997 * 109.47146 * 309.80254 * 17 14 12 35 35 H 1.08005 * 120.00467 * 180.02562 * 21 19 18 36 36 H 1.07990 * 119.98277 * 179.97438 * 22 21 19 37 37 H 1.08002 * 119.97649 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1469 2.0628 -1.1825 5 1 1.9376 3.1217 -1.2210 6 6 2.5463 1.3914 -2.3315 7 7 2.7708 0.0972 -2.2918 8 14 2.7645 2.3284 -3.9327 9 1 3.7977 3.3799 -3.7542 10 1 3.1933 1.3901 -5.0009 11 1 1.4763 2.9601 -4.3159 12 6 2.3412 1.9819 1.1625 13 8 2.6095 3.1646 1.1801 14 6 2.3687 1.1840 2.4407 15 1 1.4288 0.6434 2.5519 16 8 2.5441 2.0675 3.5501 17 6 3.5283 0.1868 2.3945 18 6 3.4150 -0.7694 3.5539 19 6 2.7010 -1.9473 3.4131 20 9 2.1050 -2.2399 2.2365 21 6 2.5972 -2.8245 4.4790 22 6 3.2058 -2.5241 5.6833 23 6 3.9185 -1.3483 5.8237 24 6 4.0288 -0.4734 4.7573 25 17 4.9306 0.9995 4.9325 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.0501 -0.3715 -3.0938 32 1 3.3621 2.5823 3.5174 33 1 4.4736 0.7256 2.4590 34 1 3.4909 -0.3708 1.4587 35 1 2.0408 -3.7437 4.3698 36 1 3.1244 -3.2084 6.5147 37 1 4.3940 -1.1147 6.7649 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355618259.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:59 Heat of formation + Delta-G solvation = -121.271683 kcal Electronic energy + Delta-G solvation = -25090.150892 eV Core-core repulsion = 21193.557667 eV Total energy + Delta-G solvation = -3896.593226 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.97104 -41.14839 -40.06638 -37.82184 -37.41683 -36.84112 -34.34592 -33.60693 -31.39695 -31.23805 -30.14671 -27.22817 -25.50748 -23.84429 -23.75273 -22.48527 -21.25171 -19.05665 -18.69550 -18.50371 -17.80821 -17.49220 -16.94587 -16.77761 -16.43236 -16.12796 -15.77416 -15.59183 -15.36813 -14.88850 -14.64213 -14.48918 -14.20814 -14.00964 -13.64726 -13.51323 -13.35447 -13.00524 -12.88208 -12.72206 -12.42793 -12.39128 -12.37123 -12.29942 -12.03432 -11.93441 -11.65793 -11.56617 -11.00070 -10.37559 -9.73152 -9.68505 -9.55952 -8.11771 -6.14003 0.00847 0.04315 1.08299 1.37688 1.40198 1.50350 1.85874 2.25405 2.44708 2.90983 3.04113 3.22498 3.24422 3.53786 3.68429 3.87712 3.94613 3.99455 4.10175 4.26190 4.37827 4.49699 4.59492 4.67507 4.75418 4.85107 4.92519 5.02949 5.11358 5.14907 5.24425 5.33633 5.37069 5.75771 5.80274 6.21702 6.45677 6.61304 7.11773 7.42271 7.94424 8.66470 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.018210 B = 0.004831 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.273638 B = 5794.464635 C = 6587.820842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.043 3.957 3 N -0.442 5.442 4 C -0.335 4.335 5 H 0.063 0.937 6 C 0.005 3.995 7 N -0.889 5.889 8 Si 0.990 3.010 9 H -0.279 1.279 10 H -0.266 1.266 11 H -0.269 1.269 12 C 0.415 3.585 13 O -0.623 6.623 14 C 0.123 3.877 15 H 0.111 0.889 16 O -0.539 6.539 17 C -0.105 4.105 18 C -0.121 4.121 19 C 0.091 3.909 20 F -0.138 7.138 21 C -0.143 4.143 22 C -0.068 4.068 23 C -0.117 4.117 24 C -0.010 4.010 25 Cl -0.060 7.060 26 H 0.079 0.921 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.143 0.857 30 H 0.073 0.927 31 H 0.276 0.724 32 H 0.379 0.621 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.168 0.832 36 H 0.185 0.815 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.867 -11.505 15.065 19.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 N -0.161 5.161 4 C -0.463 4.463 5 H 0.081 0.919 6 C -0.195 4.195 7 N -0.529 5.529 8 Si 0.813 3.187 9 H -0.205 1.205 10 H -0.190 1.190 11 H -0.194 1.194 12 C 0.204 3.796 13 O -0.511 6.511 14 C 0.060 3.940 15 H 0.129 0.871 16 O -0.344 6.344 17 C -0.142 4.142 18 C -0.123 4.123 19 C 0.072 3.928 20 F -0.117 7.117 21 C -0.162 4.162 22 C -0.086 4.086 23 C -0.136 4.136 24 C -0.037 4.037 25 Cl -0.031 7.031 26 H 0.098 0.902 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.159 0.841 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.228 0.772 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.185 0.815 36 H 0.202 0.798 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 1.531 -11.232 15.050 18.842 hybrid contribution 0.469 1.162 -1.548 1.992 sum 2.000 -10.070 13.502 16.962 Atomic orbital electron populations 1.21962 0.96804 1.01641 1.00044 1.22917 0.93961 0.83828 1.07249 1.43792 1.54586 1.13278 1.04458 1.19457 1.45696 0.94123 0.87061 0.91869 1.26106 0.94524 0.96545 1.02342 1.69171 1.45394 1.07893 1.30419 0.85056 0.78804 0.77944 0.76878 1.20480 1.18974 1.19420 1.21865 0.81604 0.88751 0.87381 1.90467 1.55727 1.17745 1.87155 1.21464 0.99375 0.88996 0.84182 0.87129 1.86459 1.47412 1.57912 1.42626 1.21147 0.99278 0.96397 0.97422 1.19529 1.01252 0.95760 0.95714 1.17727 0.97051 0.94965 0.83088 1.91506 1.81452 1.93071 1.45656 1.21603 1.02155 1.00474 0.91919 1.21438 0.93684 0.95996 0.97455 1.21482 1.00222 0.93652 0.98204 1.20720 0.98224 0.90095 0.94633 1.98367 1.72662 1.34745 1.97297 0.90229 0.94579 0.94480 0.84086 0.90903 0.91265 0.77208 0.89764 0.89565 0.81468 0.79772 0.81715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.93 10.21 71.98 0.73 -5.19 16 2 C 0.04 1.95 5.11 86.38 0.44 2.39 16 3 N -0.44 -23.44 2.59 -635.54 -1.65 -25.09 16 4 C -0.34 -19.29 9.07 84.04 0.76 -18.53 16 5 H 0.06 3.90 7.58 -2.91 -0.02 3.87 16 6 C 0.01 0.28 5.40 84.93 0.46 0.73 16 7 N -0.89 -46.21 10.23 21.66 0.22 -45.99 16 8 Si 0.99 42.78 29.55 68.60 2.03 44.80 16 9 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.27 -10.65 7.11 99.48 0.71 -9.95 16 11 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 12 C 0.42 21.58 6.94 87.66 0.61 22.19 16 13 O -0.62 -36.96 16.13 15.86 0.26 -36.71 16 14 C 0.12 5.02 2.50 29.85 0.07 5.10 16 15 H 0.11 4.40 7.44 -2.39 -0.02 4.38 16 16 O -0.54 -21.16 11.64 -130.08 -1.51 -22.68 16 17 C -0.10 -3.78 4.02 29.85 0.12 -3.66 16 18 C -0.12 -3.53 5.01 -19.80 -0.10 -3.63 16 19 C 0.09 2.40 7.24 22.37 0.16 2.56 16 20 F -0.14 -4.19 14.74 44.97 0.66 -3.53 16 21 C -0.14 -2.51 10.03 22.32 0.22 -2.29 16 22 C -0.07 -0.89 10.04 22.26 0.22 -0.67 16 23 C -0.12 -1.98 9.83 22.30 0.22 -1.76 16 24 C -0.01 -0.24 6.20 22.32 0.14 -0.11 16 25 Cl -0.06 -1.53 25.14 -2.72 -0.07 -1.60 16 26 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 27 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 28 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.14 7.10 4.47 -10.95 -0.05 7.05 16 30 H 0.07 3.00 2.57 -2.38 -0.01 3.00 16 31 H 0.28 13.39 8.31 -92.71 -0.77 12.62 16 32 H 0.38 14.28 7.75 -74.05 -0.57 13.70 16 33 H 0.08 3.06 6.89 -2.39 -0.02 3.05 16 34 H 0.09 3.44 5.53 -2.39 -0.01 3.43 16 35 H 0.17 2.00 8.06 -2.91 -0.02 1.98 16 36 H 0.19 0.83 8.06 -2.92 -0.02 0.80 16 37 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 Total: -1.00 -69.05 322.08 4.53 -64.52 By element: Atomic # 1 Polarization: 28.60 SS G_CDS: 0.52 Total: 29.12 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: 4.07 Total: -2.85 kcal Atomic # 7 Polarization: -69.65 SS G_CDS: -1.43 Total: -71.08 kcal Atomic # 8 Polarization: -58.13 SS G_CDS: -1.26 Total: -59.38 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.66 Total: -3.53 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.07 Total: -1.60 kcal Total: -69.05 4.53 -64.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355618259.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.752 kcal (2) G-P(sol) polarization free energy of solvation -69.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds