Wall clock time and date at job start Tue Mar 31 2020 10:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46492 * 109.47192 * 2 1 4 4 C 1.37099 * 120.00143 * 272.32863 * 3 2 1 5 5 H 1.08002 * 119.99924 * 181.54368 * 4 3 2 6 6 C 1.38949 * 119.99838 * 1.54453 * 4 3 2 7 7 N 1.31412 * 120.00033 * 26.85891 * 6 4 3 8 8 Si 1.86799 * 119.99607 * 206.85445 * 6 4 3 9 9 H 1.48506 * 109.47271 * 60.00473 * 8 6 4 10 10 H 1.48502 * 109.46894 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47547 * 299.99997 * 8 6 4 12 12 C 1.34783 * 120.00068 * 92.32959 * 3 2 1 13 13 O 1.21293 * 119.99459 * 353.48648 * 12 3 2 14 14 C 1.50697 * 120.00174 * 173.76725 * 12 3 2 15 15 H 1.09001 * 109.47350 * 52.16842 * 14 12 3 16 16 O 1.42898 * 109.47137 * 172.17226 * 14 12 3 17 17 C 1.53006 * 109.46767 * 292.17281 * 14 12 3 18 18 C 1.50698 * 109.46826 * 179.72949 * 17 14 12 19 19 C 1.38460 * 120.02362 * 89.99853 * 18 17 14 20 20 F 1.35097 * 120.01774 * 359.97438 * 19 18 17 21 21 C 1.38444 * 119.96224 * 179.97438 * 19 18 17 22 22 C 1.38224 * 120.00358 * 0.02562 * 21 19 18 23 23 C 1.38194 * 120.03596 * 359.97438 * 22 21 19 24 24 C 1.38300 * 120.01910 * 269.71891 * 18 17 14 25 25 Cl 1.73600 * 119.99876 * 0.02562 * 24 18 17 26 26 H 1.08998 * 109.46836 * 293.82257 * 1 2 3 27 27 H 1.08997 * 109.47063 * 53.82215 * 1 2 3 28 28 H 1.09002 * 109.47323 * 173.82580 * 1 2 3 29 29 H 1.08998 * 109.46983 * 240.00047 * 2 1 3 30 30 H 1.09005 * 109.47121 * 120.00261 * 2 1 3 31 31 H 0.97000 * 119.99927 * 180.02562 * 7 6 4 32 32 H 0.96698 * 113.99984 * 59.99562 * 16 14 12 33 33 H 1.09001 * 109.46952 * 299.72489 * 17 14 12 34 34 H 1.08993 * 109.47117 * 59.72835 * 17 14 12 35 35 H 1.08005 * 119.99810 * 180.02562 * 21 19 18 36 36 H 1.07996 * 119.97948 * 180.02562 * 22 21 19 37 37 H 1.08001 * 119.97836 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2014 2.0435 -1.1863 5 1 2.5850 3.0531 -1.1875 6 6 1.8933 1.4160 -2.3871 7 7 0.9812 0.4705 -2.4193 8 14 2.7756 1.9165 -3.9557 9 1 4.2347 1.6902 -3.7967 10 1 2.2696 1.1019 -5.0896 11 1 2.5244 3.3546 -4.2277 12 6 2.2877 2.0007 1.1663 13 8 2.0154 1.4599 2.2172 14 6 2.9215 3.3679 1.1644 15 1 2.3455 4.0345 0.5225 16 8 2.9393 3.8865 2.4958 17 6 4.3544 3.2651 0.6379 18 6 4.9859 4.6333 0.6297 19 6 5.6740 5.0854 1.7430 20 9 5.7791 4.3003 2.8374 21 6 6.2541 6.3424 1.7339 22 6 6.1459 7.1456 0.6142 23 6 5.4591 6.6944 -0.4969 24 6 4.8835 5.4360 -0.4919 25 17 4.0268 4.8676 -1.8906 26 1 -0.3633 0.4151 0.9401 27 1 -0.3633 0.6066 -0.8295 28 1 -0.3634 -1.0217 -0.1105 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 0.7664 0.0321 -3.2575 32 1 3.4354 3.3429 3.1231 33 1 4.9317 2.6023 1.2826 34 1 4.3411 2.8650 -0.3759 35 1 6.7913 6.6955 2.6019 36 1 6.5989 8.1259 0.6074 37 1 5.3755 7.3226 -1.3715 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355618301.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:02 Heat of formation + Delta-G solvation = -100.386688 kcal Electronic energy + Delta-G solvation = -25153.595856 eV Core-core repulsion = 21257.908272 eV Total energy + Delta-G solvation = -3895.687584 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.83922 -39.55516 -38.70336 -36.31774 -36.20727 -34.86253 -32.77373 -31.59473 -30.41825 -30.18231 -28.11141 -25.09533 -24.27731 -22.79628 -21.88560 -21.11839 -19.30154 -17.86672 -17.51279 -16.97375 -16.15532 -15.97719 -15.73461 -15.14360 -14.68582 -14.62504 -14.32169 -14.17092 -13.53903 -13.49488 -13.34394 -13.00473 -12.84237 -12.30784 -12.23320 -11.84681 -11.62255 -11.39857 -11.35338 -11.30357 -11.12778 -10.83521 -10.77699 -10.66980 -10.38612 -10.18372 -10.05920 -9.67893 -8.89688 -8.79269 -8.68364 -8.17987 -7.91767 -6.48115 -3.90609 0.98558 1.07339 2.17116 3.00212 3.14104 3.14805 3.39424 3.75465 3.97956 4.25850 4.54724 4.69520 4.80293 4.82486 4.92574 5.07565 5.17619 5.42387 5.56209 5.61646 5.85096 5.97230 6.03096 6.12385 6.14051 6.37028 6.48329 6.55214 6.72827 6.76556 6.86344 7.03128 7.29275 7.37903 7.65283 7.82889 8.13251 8.36922 8.98221 9.44913 9.85036 10.48030 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.014508 B = 0.006539 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.499328 B = 4280.729966 C = 5899.798511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.133 3.867 3 N -0.430 5.430 4 C -0.349 4.349 5 H 0.113 0.887 6 C 0.047 3.953 7 N -0.843 5.843 8 Si 0.888 3.112 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.268 1.268 12 C 0.419 3.581 13 O -0.605 6.605 14 C 0.118 3.882 15 H 0.113 0.887 16 O -0.546 6.546 17 C -0.120 4.120 18 C -0.090 4.090 19 C 0.123 3.877 20 F -0.130 7.130 21 C -0.153 4.153 22 C -0.090 4.090 23 C -0.123 4.123 24 C -0.015 4.015 25 Cl -0.037 7.037 26 H 0.021 0.979 27 H 0.090 0.910 28 H 0.033 0.967 29 H 0.090 0.910 30 H 0.038 0.962 31 H 0.269 0.731 32 H 0.374 0.626 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.966 10.037 0.494 14.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.011 3.989 3 N -0.148 5.148 4 C -0.476 4.476 5 H 0.131 0.869 6 C -0.160 4.160 7 N -0.480 5.480 8 Si 0.713 3.287 9 H -0.191 1.191 10 H -0.205 1.205 11 H -0.194 1.194 12 C 0.207 3.793 13 O -0.493 6.493 14 C 0.056 3.944 15 H 0.131 0.869 16 O -0.351 6.351 17 C -0.158 4.158 18 C -0.092 4.092 19 C 0.104 3.896 20 F -0.108 7.108 21 C -0.172 4.172 22 C -0.108 4.108 23 C -0.141 4.141 24 C -0.042 4.042 25 Cl -0.007 7.007 26 H 0.040 0.960 27 H 0.109 0.891 28 H 0.052 0.948 29 H 0.108 0.892 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.222 0.778 33 H 0.098 0.902 34 H 0.136 0.864 35 H 0.155 0.845 36 H 0.156 0.844 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.280 9.990 0.473 13.643 hybrid contribution 0.571 -0.433 -0.732 1.024 sum 9.852 9.557 -0.259 13.728 Atomic orbital electron populations 1.21987 0.96528 1.00202 1.00820 1.21281 0.94812 0.82876 0.99969 1.43939 1.54242 1.11769 1.04842 1.19940 1.44163 1.00866 0.82588 0.86932 1.25095 0.95190 0.96616 0.99060 1.70260 1.24928 1.25354 1.27477 0.86562 0.81093 0.79286 0.81743 1.19141 1.20529 1.19356 1.20581 0.86075 0.88400 0.84229 1.90536 1.59831 1.67516 1.31393 1.21459 0.93740 0.94992 0.84232 0.86921 1.86484 1.77989 1.51805 1.18818 1.21415 0.96114 0.91866 1.06403 1.19730 0.99181 0.98256 0.91993 1.17272 0.99312 0.89655 0.83376 1.91491 1.94208 1.73738 1.51366 1.21171 1.02436 0.93145 1.00431 1.20855 0.98332 0.99689 0.91953 1.21074 0.98838 0.94402 0.99835 1.20753 0.98784 0.94773 0.89856 1.98443 1.74786 1.88425 1.39094 0.95986 0.89101 0.94807 0.89180 0.94310 0.91984 0.77781 0.90169 0.86405 0.84457 0.84438 0.84480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.50 37.16 0.35 -2.88 16 2 C 0.13 3.25 5.35 -4.04 -0.02 3.23 16 3 N -0.43 -10.64 2.63 -114.81 -0.30 -10.94 16 4 C -0.35 -8.37 8.11 -14.93 -0.12 -8.49 16 5 H 0.11 2.50 3.03 -52.49 -0.16 2.34 16 6 C 0.05 1.11 4.97 -17.47 -0.09 1.03 16 7 N -0.84 -20.63 8.18 55.50 0.45 -20.18 16 8 Si 0.89 18.56 29.41 -169.99 -5.00 13.56 16 9 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 10 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 11 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 12 C 0.42 10.25 6.98 -10.98 -0.08 10.18 16 13 O -0.61 -16.34 15.93 -14.25 -0.23 -16.57 16 14 C 0.12 2.45 2.58 -27.88 -0.07 2.37 16 15 H 0.11 2.41 7.24 -51.93 -0.38 2.03 16 16 O -0.55 -11.00 11.97 -55.03 -0.66 -11.66 16 17 C -0.12 -2.18 4.18 -27.88 -0.12 -2.29 16 18 C -0.09 -1.42 4.91 -104.52 -0.51 -1.93 16 19 C 0.12 1.77 6.85 -39.42 -0.27 1.50 16 20 F -0.13 -1.94 15.67 2.25 0.04 -1.90 16 21 C -0.15 -1.72 10.03 -39.51 -0.40 -2.12 16 22 C -0.09 -0.89 10.04 -39.60 -0.40 -1.29 16 23 C -0.12 -1.41 9.83 -39.54 -0.39 -1.80 16 24 C -0.01 -0.22 6.31 -39.50 -0.25 -0.46 16 25 Cl -0.04 -0.60 24.95 -51.86 -1.29 -1.89 16 26 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 2.30 6.21 -51.93 -0.32 1.98 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 2.23 6.03 -51.93 -0.31 1.92 16 30 H 0.04 0.94 7.45 -51.93 -0.39 0.56 16 31 H 0.27 6.30 8.31 -40.82 -0.34 5.96 16 32 H 0.37 6.93 8.31 45.56 0.38 7.30 16 33 H 0.08 1.42 7.64 -51.93 -0.40 1.02 16 34 H 0.12 2.26 4.94 -51.93 -0.26 2.01 16 35 H 0.14 1.21 8.06 -52.48 -0.42 0.78 16 36 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 319.29 15.07 4.81 4.81 Total: -1.00 -28.16 319.29 -7.62 -35.78 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -3.08 Total: 11.95 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -2.36 Total: -2.97 kcal Atomic # 7 Polarization: -31.27 SS G_CDS: 0.15 Total: -31.12 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.89 Total: -28.23 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.00 Total: 13.56 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.29 Total: -1.89 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.16 -7.62 -35.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355618301.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.606 kcal (2) G-P(sol) polarization free energy of solvation -28.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds