Wall clock time and date at job start Tue Mar 31 2020 10:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46492 * 109.47192 * 2 1 4 4 C 1.37099 * 120.00143 * 272.32863 * 3 2 1 5 5 H 1.08002 * 119.99924 * 181.54368 * 4 3 2 6 6 C 1.38949 * 119.99838 * 1.54453 * 4 3 2 7 7 N 1.31412 * 120.00033 * 26.85891 * 6 4 3 8 8 Si 1.86799 * 119.99607 * 206.85445 * 6 4 3 9 9 H 1.48506 * 109.47271 * 60.00473 * 8 6 4 10 10 H 1.48502 * 109.46894 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47547 * 299.99997 * 8 6 4 12 12 C 1.34783 * 120.00068 * 92.32959 * 3 2 1 13 13 O 1.21293 * 119.99459 * 353.48648 * 12 3 2 14 14 C 1.50697 * 120.00174 * 173.76725 * 12 3 2 15 15 H 1.09001 * 109.47350 * 52.16842 * 14 12 3 16 16 O 1.42898 * 109.47137 * 172.17226 * 14 12 3 17 17 C 1.53006 * 109.46767 * 292.17281 * 14 12 3 18 18 C 1.50698 * 109.46826 * 179.72949 * 17 14 12 19 19 C 1.38460 * 120.02362 * 89.99853 * 18 17 14 20 20 F 1.35097 * 120.01774 * 359.97438 * 19 18 17 21 21 C 1.38444 * 119.96224 * 179.97438 * 19 18 17 22 22 C 1.38224 * 120.00358 * 0.02562 * 21 19 18 23 23 C 1.38194 * 120.03596 * 359.97438 * 22 21 19 24 24 C 1.38300 * 120.01910 * 269.71891 * 18 17 14 25 25 Cl 1.73600 * 119.99876 * 0.02562 * 24 18 17 26 26 H 1.08998 * 109.46836 * 293.82257 * 1 2 3 27 27 H 1.08997 * 109.47063 * 53.82215 * 1 2 3 28 28 H 1.09002 * 109.47323 * 173.82580 * 1 2 3 29 29 H 1.08998 * 109.46983 * 240.00047 * 2 1 3 30 30 H 1.09005 * 109.47121 * 120.00261 * 2 1 3 31 31 H 0.97000 * 119.99927 * 180.02562 * 7 6 4 32 32 H 0.96698 * 113.99984 * 59.99562 * 16 14 12 33 33 H 1.09001 * 109.46952 * 299.72489 * 17 14 12 34 34 H 1.08993 * 109.47117 * 59.72835 * 17 14 12 35 35 H 1.08005 * 119.99810 * 180.02562 * 21 19 18 36 36 H 1.07996 * 119.97948 * 180.02562 * 22 21 19 37 37 H 1.08001 * 119.97836 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.2014 2.0435 -1.1863 5 1 2.5850 3.0531 -1.1875 6 6 1.8933 1.4160 -2.3871 7 7 0.9812 0.4705 -2.4193 8 14 2.7756 1.9165 -3.9557 9 1 4.2347 1.6902 -3.7967 10 1 2.2696 1.1019 -5.0896 11 1 2.5244 3.3546 -4.2277 12 6 2.2877 2.0007 1.1663 13 8 2.0154 1.4599 2.2172 14 6 2.9215 3.3679 1.1644 15 1 2.3455 4.0345 0.5225 16 8 2.9393 3.8865 2.4958 17 6 4.3544 3.2651 0.6379 18 6 4.9859 4.6333 0.6297 19 6 5.6740 5.0854 1.7430 20 9 5.7791 4.3003 2.8374 21 6 6.2541 6.3424 1.7339 22 6 6.1459 7.1456 0.6142 23 6 5.4591 6.6944 -0.4969 24 6 4.8835 5.4360 -0.4919 25 17 4.0268 4.8676 -1.8906 26 1 -0.3633 0.4151 0.9401 27 1 -0.3633 0.6066 -0.8295 28 1 -0.3634 -1.0217 -0.1105 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 0.7664 0.0321 -3.2575 32 1 3.4354 3.3429 3.1231 33 1 4.9317 2.6023 1.2826 34 1 4.3411 2.8650 -0.3759 35 1 6.7913 6.6955 2.6019 36 1 6.5989 8.1259 0.6074 37 1 5.3755 7.3226 -1.3715 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355618301.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:01 Heat of formation + Delta-G solvation = -115.970825 kcal Electronic energy + Delta-G solvation = -25154.271635 eV Core-core repulsion = 21257.908272 eV Total energy + Delta-G solvation = -3896.363363 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.92130 -41.08480 -40.05707 -37.90297 -37.44011 -36.75255 -34.11083 -33.46025 -31.97038 -31.36290 -29.56767 -26.92402 -25.81465 -23.79501 -23.59485 -22.40298 -21.18260 -19.49790 -18.70251 -18.46406 -17.57259 -17.40245 -16.79625 -16.57962 -16.31044 -16.03717 -15.92517 -15.68402 -15.16553 -15.00648 -14.52648 -14.38860 -14.20476 -14.06297 -13.72814 -13.37264 -13.26877 -12.97074 -12.80238 -12.63444 -12.51964 -12.44822 -12.29244 -12.23480 -12.05323 -11.72276 -11.69232 -11.51741 -10.81858 -10.25096 -9.85342 -9.71512 -9.65338 -8.34074 -5.81526 0.01550 0.09129 1.04146 1.31462 1.42954 1.52788 1.86407 2.21973 2.46577 2.85076 3.05561 3.27116 3.32832 3.62819 3.75172 3.93721 4.04099 4.19416 4.24050 4.28870 4.49920 4.59539 4.75463 4.80096 4.85969 4.92447 4.98423 5.08606 5.14559 5.18404 5.25355 5.38402 5.46251 5.74499 5.78565 5.86477 6.44160 6.57783 7.08790 7.53576 7.93841 8.63092 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.014508 B = 0.006539 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.499328 B = 4280.729966 C = 5899.798511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.132 3.868 3 N -0.435 5.435 4 C -0.366 4.366 5 H 0.128 0.872 6 C 0.014 3.986 7 N -0.862 5.862 8 Si 0.937 3.063 9 H -0.262 1.262 10 H -0.279 1.279 11 H -0.258 1.258 12 C 0.403 3.597 13 O -0.640 6.640 14 C 0.132 3.868 15 H 0.105 0.895 16 O -0.548 6.548 17 C -0.106 4.106 18 C -0.116 4.116 19 C 0.103 3.897 20 F -0.140 7.140 21 C -0.144 4.144 22 C -0.070 4.070 23 C -0.117 4.117 24 C -0.028 4.028 25 Cl -0.061 7.061 26 H 0.008 0.992 27 H 0.074 0.926 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.032 0.968 31 H 0.272 0.728 32 H 0.381 0.619 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.167 0.833 36 H 0.184 0.816 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.725 12.592 -0.198 17.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.009 3.991 3 N -0.152 5.152 4 C -0.492 4.492 5 H 0.145 0.855 6 C -0.190 4.190 7 N -0.499 5.499 8 Si 0.760 3.240 9 H -0.187 1.187 10 H -0.204 1.204 11 H -0.183 1.183 12 C 0.192 3.808 13 O -0.530 6.530 14 C 0.069 3.931 15 H 0.123 0.877 16 O -0.353 6.353 17 C -0.144 4.144 18 C -0.117 4.117 19 C 0.084 3.916 20 F -0.119 7.119 21 C -0.163 4.163 22 C -0.088 4.088 23 C -0.136 4.136 24 C -0.055 4.055 25 Cl -0.032 7.032 26 H 0.027 0.973 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.229 0.771 33 H 0.093 0.907 34 H 0.122 0.878 35 H 0.185 0.815 36 H 0.202 0.798 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 11.044 12.552 -0.228 16.721 hybrid contribution 0.042 -1.180 -0.486 1.277 sum 11.086 11.372 -0.714 15.898 Atomic orbital electron populations 1.21821 0.95874 1.01098 0.99256 1.21268 0.95303 0.83183 0.99300 1.44157 1.53762 1.11842 1.05457 1.20364 1.44615 1.01791 0.82449 0.85454 1.25761 0.95256 0.96707 1.01318 1.70321 1.25351 1.25995 1.28270 0.85786 0.80151 0.79523 0.78496 1.18668 1.20442 1.18271 1.21296 0.86136 0.89740 0.83637 1.90492 1.61346 1.68829 1.32373 1.21257 0.95118 0.92189 0.84498 0.87692 1.86447 1.78270 1.51780 1.18849 1.21125 0.94369 0.93893 1.05033 1.19570 1.01197 0.97367 0.93610 1.17579 1.00309 0.90934 0.82790 1.91463 1.94378 1.74296 1.51732 1.21590 1.01163 0.91575 1.01958 1.21405 0.96254 1.00916 0.90214 1.21466 0.97617 0.93113 1.01399 1.20900 0.99780 0.96014 0.88774 1.98424 1.75574 1.88924 1.40274 0.97269 0.90679 0.92664 0.89576 0.94996 0.91743 0.77075 0.90729 0.87761 0.81521 0.79837 0.81912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.87 9.50 71.98 0.68 -5.19 16 2 C 0.13 6.63 5.35 86.38 0.46 7.09 16 3 N -0.43 -22.10 2.63 -635.54 -1.67 -23.77 16 4 C -0.37 -17.77 8.11 84.04 0.68 -17.09 16 5 H 0.13 5.72 3.03 -2.91 -0.01 5.71 16 6 C 0.01 0.68 4.97 84.93 0.42 1.10 16 7 N -0.86 -42.37 8.18 21.66 0.18 -42.19 16 8 Si 0.94 37.58 29.41 68.60 2.02 39.59 16 9 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 10 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 11 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 12 C 0.40 20.31 6.98 87.66 0.61 20.92 16 13 O -0.64 -35.74 15.93 15.86 0.25 -35.48 16 14 C 0.13 5.57 2.58 29.85 0.08 5.65 16 15 H 0.11 4.58 7.24 -2.39 -0.02 4.57 16 16 O -0.55 -22.37 11.97 -130.05 -1.56 -23.93 16 17 C -0.11 -3.91 4.18 29.85 0.12 -3.79 16 18 C -0.12 -3.56 4.91 -19.80 -0.10 -3.66 16 19 C 0.10 2.80 6.85 22.37 0.15 2.95 16 20 F -0.14 -4.10 15.67 44.97 0.70 -3.40 16 21 C -0.14 -2.69 10.03 22.32 0.22 -2.47 16 22 C -0.07 -1.04 10.04 22.26 0.22 -0.81 16 23 C -0.12 -2.26 9.83 22.29 0.22 -2.04 16 24 C -0.03 -0.77 6.31 22.32 0.14 -0.63 16 25 Cl -0.06 -1.92 24.95 -2.72 -0.07 -1.99 16 26 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.07 3.86 6.21 -2.39 -0.01 3.84 16 28 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.09 4.36 6.03 -2.39 -0.01 4.34 16 30 H 0.03 1.61 7.45 -2.38 -0.02 1.59 16 31 H 0.27 12.70 8.31 -92.71 -0.77 11.93 16 32 H 0.38 14.41 8.31 -74.06 -0.62 13.80 16 33 H 0.07 2.74 7.64 -2.39 -0.02 2.72 16 34 H 0.10 4.09 4.94 -2.39 -0.01 4.08 16 35 H 0.17 2.12 8.06 -2.91 -0.02 2.10 16 36 H 0.18 1.10 8.06 -2.91 -0.02 1.08 16 37 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -61.90 319.29 4.31 -57.59 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: 0.52 Total: 31.55 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 3.93 Total: 2.03 kcal Atomic # 7 Polarization: -64.47 SS G_CDS: -1.49 Total: -65.96 kcal Atomic # 8 Polarization: -58.11 SS G_CDS: -1.30 Total: -59.41 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.70 Total: -3.40 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.02 Total: 39.59 kcal Atomic # 17 Polarization: -1.92 SS G_CDS: -0.07 Total: -1.99 kcal Total: -61.90 4.31 -57.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355618301.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.378 kcal (2) G-P(sol) polarization free energy of solvation -61.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds